KDM5D-DT

Summary

KDM5D-DT (KDM5D divergent transcript, HGNC:58352) is a long non-coding RNA gene on chromosome Yq11.223.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58352
Approved symbol	KDM5D-DT
Name	KDM5D divergent transcript
Location	Yq11.223
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000288049
Ensembl biotype	lncRNA
Entrez	105377224

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000652994, ENST00000653234, ENST00000766638, ENST00000766639

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000652994 — 3 exons

Exon	Start	End
ENSE00003862307	19754727	19754815
ENSE00003867497	19755205	19759978
ENSE00003885494	19744952	19745713

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 64.81.

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortical plate	UBERON:0005343	64.81	gold quality
ventricular zone	UBERON:0003053	62.84	gold quality
ganglionic eminence	UBERON:0004023	61.53	gold quality
right hemisphere of cerebellum	UBERON:0014890	60.46	gold quality
skeletal muscle tissue	UBERON:0001134	59.64	silver quality
cerebellum	UBERON:0002037	58.80	gold quality
cerebellar cortex	UBERON:0002129	58.79	gold quality
cerebellar hemisphere	UBERON:0002245	58.66	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.41	silver quality
descending thoracic aorta	UBERON:0002345	57.13	gold quality
calcaneal tendon	UBERON:0003701	56.74	gold quality
lymph node	UBERON:0000029	56.33	gold quality
popliteal artery	UBERON:0002250	54.69	gold quality
tibial artery	UBERON:0007610	54.68	gold quality
muscle of leg	UBERON:0001383	54.14	gold quality
tonsil	UBERON:0002372	53.96	gold quality
gastrocnemius	UBERON:0001388	53.95	gold quality
right adrenal gland	UBERON:0001233	53.85	gold quality
right adrenal gland cortex	UBERON:0035827	53.55	gold quality
left adrenal gland	UBERON:0001234	53.42	gold quality
thoracic aorta	UBERON:0001515	53.41	gold quality
left adrenal gland cortex	UBERON:0035825	53.27	gold quality
adrenal gland	UBERON:0002369	53.17	gold quality
vermiform appendix	UBERON:0001154	53.08	gold quality
urinary bladder	UBERON:0001255	53.05	gold quality
ascending aorta	UBERON:0001496	52.94	gold quality
left coronary artery	UBERON:0001626	52.66	gold quality
superior frontal gyrus	UBERON:0002661	52.37	gold quality
right lobe of thyroid gland	UBERON:0001119	52.22	gold quality
duodenum	UBERON:0002114	52.08	gold quality

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.