KGD4
gene geneOn this page
Also known as DC47MRP-S36
Summary
KGD4 (alpha-ketoglutarate dehydrogenase subunit 4, HGNC:16631) is a protein-coding gene on chromosome 5q13.2, encoding Alpha-ketoglutarate dehydrogenase component 4 (P82909). Molecular adapter that is necessary to form a stable 2-oxoglutarate dehydrogenase enzyme complex (OGDHC). It is a selective cancer dependency (DepMap: 12.9% of cell lines).
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. The mitochondrial ribosome (mitoribosome) consists of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein. Pseudogenes corresponding to this gene are found on chromosomes 3p, 4q, 8p, 11q, 12q, and 20p.
Source: NCBI Gene 92259 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Leigh syndrome (Limited, GenCC)
- Clinical variants (ClinVar): 19 total — 1 pathogenic, 1 likely-pathogenic
- Cancer dependency (DepMap): dependent in 12.9% of screened cell lines
- MANE Select transcript:
NM_033281
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:16631 |
| Approved symbol | KGD4 |
| Name | alpha-ketoglutarate dehydrogenase subunit 4 |
| Location | 5q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DC47, MRP-S36 |
| Ensembl gene | ENSG00000134056 |
| Ensembl biotype | protein_coding |
| OMIM | 611996 |
| Entrez | 92259 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 4 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000256441, ENST00000503793, ENST00000507022, ENST00000512880, ENST00000602380, ENST00000932836
RefSeq mRNA: 1 — MANE Select: NM_033281
NM_033281
CCDS: CCDS34174
Canonical transcript exons
ENST00000256441 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001008509 | 69229208 | 69230158 |
| ENSE00002035058 | 69217760 | 69217871 |
| ENSE00003508554 | 69228200 | 69228387 |
| ENSE00003578888 | 69226338 | 69226401 |
Expression profiles
Bgee: expression breadth ubiquitous, 139 present calls, max score 96.83.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 27.0454 / max 221.5980, expressed in 1817 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 56838 | 19.1936 | 1813 |
| 56839 | 7.8518 | 1748 |
Top tissues by expression
139 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| apex of heart | UBERON:0002098 | 96.83 | gold quality |
| heart left ventricle | UBERON:0002084 | 96.79 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 96.39 | gold quality |
| heart | UBERON:0000948 | 95.55 | gold quality |
| right atrium auricular region | UBERON:0006631 | 95.25 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 94.69 | gold quality |
| gastrocnemius | UBERON:0001388 | 94.32 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 94.19 | gold quality |
| muscle of leg | UBERON:0001383 | 94.11 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 94.07 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 93.08 | gold quality |
| kidney | UBERON:0002113 | 92.92 | gold quality |
| primary visual cortex | UBERON:0002436 | 92.54 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 92.42 | gold quality |
| prefrontal cortex | UBERON:0000451 | 92.28 | gold quality |
| cortex of kidney | UBERON:0001225 | 92.19 | gold quality |
| transverse colon | UBERON:0001157 | 92.01 | gold quality |
| endometrium | UBERON:0001295 | 91.99 | gold quality |
| rectum | UBERON:0001052 | 91.70 | gold quality |
| islet of Langerhans | UBERON:0000006 | 91.67 | gold quality |
| muscle tissue | UBERON:0002385 | 91.55 | gold quality |
| right lobe of liver | UBERON:0001114 | 91.49 | gold quality |
| nucleus accumbens | UBERON:0001882 | 91.36 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 91.28 | gold quality |
| metanephros cortex | UBERON:0010533 | 91.28 | gold quality |
| colon | UBERON:0001155 | 91.21 | gold quality |
| adrenal tissue | UBERON:0018303 | 91.21 | gold quality |
| duodenum | UBERON:0002114 | 91.15 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 91.12 | gold quality |
| substantia nigra | UBERON:0002038 | 91.11 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 17.45 |
| E-CURD-10 | no | 317.50 |
| E-MTAB-6524 | no | 174.32 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
64 targeting KGD4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-548AS-5P | 99.94 | 71.22 | 3482 |
| HSA-MIR-548AU-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AY-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548B-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548BB-5P | 99.94 | 71.27 | 3509 |
| HSA-MIR-548C-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548D-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548H-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548I | 99.94 | 71.25 | 3481 |
| HSA-MIR-548J-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548O-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548W | 99.94 | 71.24 | 3488 |
| HSA-MIR-548Y | 99.94 | 71.28 | 3514 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 12.9% of screened cell lines.
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | kgd4 | ENSDARG00000079823 |
| mus_musculus | Mrps36 | ENSMUSG00000061474 |
| rattus_norvegicus | AC132020.1 | ENSRNOG00000017757 |
| rattus_norvegicus | Kgd4 | ENSRNOG00000061213 |
Protein
Protein identifiers
Alpha-ketoglutarate dehydrogenase component 4 — P82909 (reviewed: P82909)
Alternative names: Alpha-ketoglutarate dehydrogenase subunit 4
All UniProt accessions (2): D6R941, P82909
UniProt curated annotations — full annotation on UniProt →
Function. Molecular adapter that is necessary to form a stable 2-oxoglutarate dehydrogenase enzyme complex (OGDHC). Enables the specific recruitment of E3 subunit to E2 subunit in the 2-oxoglutarate dehydrogenase complex (OGDHC).
Subunit / interactions. Component of the 2-oxoglutarate dehydrogenase complex (OGDHC), composed of OGDH (2-oxoglutarate dehydrogenase; also called E1 subunit), DLST (dihydrolipoamide succinyltransferase; also called E2 subunit) and DLD (dihydrolipoamide dehydrogenase; also called E3 subunit), and the assembly factor KGD4. Within OGDHC complex, interacts (via N-terminus) with E3 subunit and (via C-terminus) with E2 subunit.
Subcellular location. Mitochondrion.
Similarity. Belongs to the alpha-ketoglutarate dehydrogenase component 4 family.
RefSeq proteins (1): NP_150597* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR020373 | Kgd4/YMR-31 | Family |
UniProt features (8 total): modified residue 5, chain 1, region of interest 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P82909-F1 | 74.79 | 0.21 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (5): 1, 5, 49, 61, 90
Function
Pathways and Gene Ontology
Reactome pathways
14 pathways
| ID | Pathway |
|---|---|
| R-HSA-5368286 | Mitochondrial translation initiation |
| R-HSA-5389840 | Mitochondrial translation elongation |
| R-HSA-5419276 | Mitochondrial translation termination |
| R-HSA-6783984 | Glycine degradation |
| R-HSA-9853506 | OGDH complex synthesizes succinyl-CoA from 2-OG |
| R-HSA-9937383 | Mitochondrial ribosome-associated quality control |
| R-HSA-1428517 | Aerobic respiration and respiratory electron transport |
| R-HSA-1430728 | Metabolism |
| R-HSA-389661 | Glyoxylate metabolism and glycine degradation |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-5368287 | Mitochondrial translation |
| R-HSA-71291 | Metabolism of amino acids and derivatives |
| R-HSA-71403 | Citric acid cycle (TCA cycle) |
| R-HSA-72766 | Translation |
MSigDB gene sets: 125 (showing top):
IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, LINDGREN_BLADDER_CANCER_CLUSTER_3_DN, GOBP_DICARBOXYLIC_ACID_METABOLIC_PROCESS, GOBP_GENERATION_OF_PRECURSOR_METABOLITES_AND_ENERGY, WEI_MYCN_TARGETS_WITH_E_BOX, MODULE_331, GOCC_MITOCHONDRIAL_ENVELOPE, GOBP_ORGANIC_ACID_METABOLIC_PROCESS, WONG_MITOCHONDRIA_GENE_MODULE, GOBP_CELLULAR_RESPIRATION, GOBP_2_OXOGLUTARATE_METABOLIC_PROCESS, GOCC_OXIDOREDUCTASE_COMPLEX, GOCC_TRANSFERASE_COMPLEX, GOCC_ORGANELLE_INNER_MEMBRANE, GOCC_TRICARBOXYLIC_ACID_CYCLE_HETEROMERIC_ENZYME_COMPLEX
GO Biological Process (2): tricarboxylic acid cycle (GO:0006099), 2-oxoglutarate metabolic process (GO:0006103)
GO Molecular Function (1): protein-macromolecule adaptor activity (GO:0030674)
GO Cellular Component (3): mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), oxoglutarate dehydrogenase complex (GO:0045252)
Reactome top-level categories
Rollup of top-8 pathways:
| Category | Pathways |
|---|---|
| Mitochondrial translation | 4 |
| Metabolism | 2 |
| Glyoxylate metabolism and glycine degradation | 1 |
| Citric acid cycle (TCA cycle) | 1 |
| Metabolism of amino acids and derivatives | 1 |
| Translation | 1 |
| Aerobic respiration and respiratory electron transport | 1 |
| Metabolism of proteins | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| aerobic respiration | 1 |
| primary metabolic process | 1 |
| dicarboxylic acid metabolic process | 1 |
| protein binding | 1 |
| molecular adaptor activity | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
| tricarboxylic acid cycle heteromeric enzyme complex | 1 |
| alpha-ketoacid dehydrogenase complex | 1 |
| transferase complex | 1 |
Protein interactions and networks
STRING
890 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| KGD4 | MRPL42 | Q9Y6G3 | 630 |
| KGD4 | MTIF3 | Q9H2K0 | 543 |
| KGD4 | PTCD3 | Q96EY7 | 534 |
| KGD4 | MRPL33 | O75394 | 521 |
| KGD4 | MRPL16 | Q9NX20 | 492 |
| KGD4 | DAP3 | P51398 | 466 |
| KGD4 | MRPL52 | Q86TS9 | 457 |
| KGD4 | MRPS27 | Q92552 | 444 |
| KGD4 | GADD45GIP1 | Q8TAE8 | 443 |
| KGD4 | MRPS15 | P82914 | 436 |
| KGD4 | MRPL41 | Q8IXM3 | 422 |
| KGD4 | MRPS35 | P82673 | 417 |
| KGD4 | SNX30 | Q5VWJ9 | 400 |
| KGD4 | MSANTD4 | Q8NCY6 | 398 |
| KGD4 | PDHX | O00330 | 396 |
IntAct
40 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DLD | PDHX | psi-mi:“MI:0914”(association) | 0.880 |
| KGD4 | DLD | psi-mi:“MI:0914”(association) | 0.640 |
| COLGALT2 | COL1A1 | psi-mi:“MI:0914”(association) | 0.530 |
| HMGCL | DBT | psi-mi:“MI:0914”(association) | 0.530 |
| ISX | MOCS3 | psi-mi:“MI:0914”(association) | 0.530 |
| Hdac6 | TDG | psi-mi:“MI:0914”(association) | 0.350 |
| HDAC6 | GLOD5 | psi-mi:“MI:0914”(association) | 0.350 |
| HSCB | RBP5 | psi-mi:“MI:0914”(association) | 0.350 |
| ORF70 | PDHX | psi-mi:“MI:0914”(association) | 0.350 |
| ABHD11 | NME4 | psi-mi:“MI:0914”(association) | 0.350 |
| CEP135 | MCRIP1 | psi-mi:“MI:0914”(association) | 0.350 |
| POC5 | PDHX | psi-mi:“MI:0914”(association) | 0.350 |
| CEP135 | WWP2 | psi-mi:“MI:0914”(association) | 0.350 |
| CEP135 | WDR91 | psi-mi:“MI:0914”(association) | 0.350 |
| CHD8 | IGLV4-60 | psi-mi:“MI:0914”(association) | 0.350 |
| CAPZB | ENAH | psi-mi:“MI:0914”(association) | 0.350 |
| POLR2B | PALM3 | psi-mi:“MI:0914”(association) | 0.350 |
| POLR2K | BDP1 | psi-mi:“MI:0914”(association) | 0.350 |
| TCAIM | KGD4 | psi-mi:“MI:0914”(association) | 0.350 |
| THEM5 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.350 |
| COLGALT2 | PLOD2 | psi-mi:“MI:0914”(association) | 0.350 |
| KGD4 | SPTBN2 | psi-mi:“MI:0914”(association) | 0.350 |
| SIAH1 | SIAH2 | psi-mi:“MI:0914”(association) | 0.350 |
| ESRRG | TTR | psi-mi:“MI:0914”(association) | 0.350 |
| OGDHL | TMSB4X | psi-mi:“MI:0914”(association) | 0.350 |
| RAD23A | PIK3C2A | psi-mi:“MI:0914”(association) | 0.350 |
| TRMT61B | PRORP | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (133): MRPS36 (Affinity Capture-MS), MRPS36 (Co-fractionation), MRPS36 (Affinity Capture-MS), MRPS36 (Affinity Capture-MS), MRPS36 (Affinity Capture-MS), MRPS36 (Affinity Capture-MS), MRPS36 (Affinity Capture-MS), MRPS36 (Affinity Capture-MS), MRPS36 (Affinity Capture-MS), MRPS36 (Proximity Label-MS), MRPS36 (Proximity Label-MS), MRPS36 (Proximity Label-MS), MRPS36 (Proximity Label-MS), MRPS36 (Proximity Label-MS), MRPS36 (Proximity Label-MS)
ESM2 similar proteins: A0A7P0TBJ1, A4IG66, A8E4M4, A9JSQ8, B0BN72, C9JLW8, E1C760, O75182, P82909, P97578, Q02225, Q0P4B9, Q13541, Q1JPG0, Q28C41, Q32LE2, Q3MHI4, Q3UGS4, Q3ULM0, Q4QQM5, Q4V8E4, Q504E7, Q5BLE2, Q5DTY9, Q5U465, Q5VSY0, Q5XIG5, Q5XJS0, Q5ZIU1, Q62141, Q63068, Q68DU8, Q6GR21, Q6IEG0, Q6PCG6, Q6TYB5, Q7L4E1, Q8AVJ1, Q8BK03, Q8C6E0
Diamond homologs: P82908, P82909, Q9CQX8
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
19 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 1 |
| Uncertain significance | 10 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3909971 | NM_033281.6(KGD4):c.42+1G>A | Pathogenic |
| 3909972 | NM_033281.6(KGD4):c.296G>C (p.Arg99Pro) | Likely pathogenic |
SpliceAI
321 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:69226337:GGTA:G | acceptor_gain | 1.0000 |
| 5:69228192:A:AG | acceptor_gain | 1.0000 |
| 5:69228193:A:AG | acceptor_gain | 1.0000 |
| 5:69228198:A:AG | acceptor_gain | 1.0000 |
| 5:69228199:G:GA | acceptor_gain | 1.0000 |
| 5:69228199:GT:G | acceptor_gain | 1.0000 |
| 5:69228199:GTA:G | acceptor_gain | 1.0000 |
| 5:69228199:GTAT:G | acceptor_gain | 1.0000 |
| 5:69228199:GTATC:G | acceptor_gain | 1.0000 |
| 5:69228266:G:GT | donor_gain | 1.0000 |
| 5:69228387:AGTA:A | donor_loss | 1.0000 |
| 5:69228388:G:C | donor_loss | 1.0000 |
| 5:69228388:G:GG | donor_gain | 1.0000 |
| 5:69228389:T:G | donor_loss | 1.0000 |
| 5:69229205:CA:C | acceptor_loss | 1.0000 |
| 5:69229206:A:AG | acceptor_gain | 1.0000 |
| 5:69229206:A:T | acceptor_loss | 1.0000 |
| 5:69229206:AGCGT:A | acceptor_gain | 1.0000 |
| 5:69229207:G:GC | acceptor_gain | 1.0000 |
| 5:69229207:GC:G | acceptor_gain | 1.0000 |
| 5:69229207:GCGT:G | acceptor_gain | 1.0000 |
| 5:69229207:GCGTG:G | acceptor_gain | 1.0000 |
| 5:69218431:G:GG | donor_gain | 0.9900 |
| 5:69226333:TTTA:T | acceptor_loss | 0.9900 |
| 5:69226335:TAGGT:T | acceptor_loss | 0.9900 |
| 5:69226336:A:G | acceptor_loss | 0.9900 |
| 5:69226337:G:GA | acceptor_loss | 0.9900 |
| 5:69226337:GGT:G | acceptor_gain | 0.9900 |
| 5:69226397:CAATG:C | donor_gain | 0.9900 |
| 5:69226398:AATGG:A | donor_loss | 0.9900 |
AlphaMissense
666 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:69228351:G:C | R86S | 0.997 |
| 5:69228351:G:T | R86S | 0.997 |
| 5:69226368:T:C | F25L | 0.996 |
| 5:69226370:T:A | F25L | 0.996 |
| 5:69226370:T:G | F25L | 0.996 |
| 5:69228350:G:C | R86T | 0.996 |
| 5:69226369:T:C | F25S | 0.995 |
| 5:69226363:T:C | I23T | 0.994 |
| 5:69226369:T:G | F25C | 0.992 |
| 5:69228383:T:A | I97N | 0.992 |
| 5:69228350:G:T | R86M | 0.990 |
| 5:69229209:G:C | R99P | 0.990 |
| 5:69229214:G:C | G101R | 0.988 |
| 5:69228383:T:G | I97S | 0.987 |
| 5:69229211:G:A | G100R | 0.987 |
| 5:69229211:G:C | G100R | 0.987 |
| 5:69229215:G:A | G101D | 0.987 |
| 5:69226342:T:A | V16D | 0.986 |
| 5:69226379:A:C | R28S | 0.986 |
| 5:69226379:A:T | R28S | 0.986 |
| 5:69229212:G:A | G100E | 0.986 |
| 5:69226363:T:A | I23K | 0.985 |
| 5:69217862:G:C | R11S | 0.984 |
| 5:69217862:G:T | R11S | 0.984 |
| 5:69228383:T:C | I97T | 0.984 |
| 5:69226368:T:G | F25V | 0.981 |
| 5:69229212:G:T | G100V | 0.981 |
| 5:69217855:C:A | A9D | 0.980 |
| 5:69228349:A:G | R86G | 0.979 |
| 5:69217861:G:T | R11M | 0.978 |
dbSNP variants (sampled 300 via entrez): RS1000109357 (5:69223982 A>G), RS1000388209 (5:69217742 T>A,C), RS1000723205 (5:69216342 C>A), RS1000922904 (5:69222048 A>G), RS1001414494 (5:69219600 A>G), RS1001509982 (5:69218113 T>C), RS1001878102 (5:69217079 G>A,C,T), RS1002169367 (5:69226011 A>G), RS1002452662 (5:69227206 G>C), RS1002478839 (5:69219363 T>C), RS1003189804 (5:69216102 C>A), RS1003243908 (5:69216474 T>G), RS1003454794 (5:69220907 A>T), RS1003781970 (5:69222189 A>G), RS1003796759 (5:69224540 C>G)
Disease associations
OMIM: gene MIM:611996 | disease phenotypes: MIM:256000
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Leigh syndrome | Limited | Autosomal recessive |
Mondo (1): Leigh syndrome (MONDO:0009723)
Orphanet (1): Leigh syndrome (Orphanet:506)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D007888 | Leigh Disease | C10.228.140.163.100.412; C16.320.565.189.412; C16.320.565.202.810.444; C18.452.132.100.412; C18.452.648.189.412; C18.452.648.202.810.444; C18.452.660.520 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
18 total (human), top 18 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Acetaminophen | decreases expression | 2 |
| FR900359 | increases phosphorylation | 1 |
| dicrotophos | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| jinfukang | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Cisplatin | increases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Lipopolysaccharides | decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Zinc | decreases expression | 1 |
| Sodium Selenite | increases expression | 1 |
| Copper Sulfate | decreases expression, increases expression | 1 |
| Lactic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
14 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01721733 | PHASE2 | COMPLETED | Safety and Efficacy Study of EPI-743 in Children With Leigh Syndrome |
| NCT02352896 | PHASE2 | COMPLETED | Long-Term Safety and Efficacy Evaluation of EPI-743 in Children With Leigh Syndrome |
| NCT03747328 | PHASE2 | WITHDRAWN | ABI-009 (Nab-sirolimus) in Patients With Genetically-confirmed Leigh or Leigh-like Syndrome |
| NCT06843811 | PHASE2 | ENROLLING_BY_INVITATION | Sirolimus for Leigh Syndrome |
| NCT06990984 | PHASE2 | NOT_YET_RECRUITING | A Dose-ranging Study of TTI-0102 in Adults and Children With Leigh Syndrome Spectrum (LSS) |
| NCT02544217 | PHASE1 | COMPLETED | A Dose-escalating Clinical Trial With KH176 |
| NCT04378075 | PHASE2/PHASE3 | TERMINATED | A Study to Evaluate Efficacy and Safety of Vatiquinone for Treating Mitochondrial Disease in Participants With Refractory Epilepsy |
| NCT01780168 | Not specified | RECRUITING | The NIH MINI Study: Metabolism, Infection, and Immunity in Inborn Errors of Metabolism |
| NCT01793168 | Not specified | RECRUITING | Rare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford |
| NCT01803906 | Not specified | ENROLLING_BY_INVITATION | Tissue Sample Study for Mitochondrial Disorders |
| NCT03137355 | Not specified | RECRUITING | The International Registry for Leigh Syndrome |
| NCT05277363 | Not specified | WITHDRAWN | A Study of the Natural Course of SURF1 Deficiency |
| NCT05554835 | Not specified | RECRUITING | Global Registry and Natural History Study for Mitochondrial Disorders |
| NCT06967831 | Not specified | RECRUITING | Drug Repurposing for Mitochondrial Disorders Using iPSCs Derived Neural Cells |
Related Atlas pages
- Associated diseases: Leigh syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Leigh syndrome