KIF18B
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Summary
KIF18B (kinesin family member 18B, HGNC:27102) is a protein-coding gene on chromosome 17q21.31, encoding Kinesin-like protein KIF18B (Q86Y91). In complex with KIF2C, constitutes the major microtubule plus-end depolymerizing activity in mitotic cells. It is a selective cancer dependency (DepMap: 36.3% of cell lines).
Enables cytoskeletal motor activity and kinesin binding activity. Involved in microtubule depolymerization; mitotic cell cycle; and regulation of cell division. Located in cytosol; microtubule; and nuclear lumen.
Source: NCBI Gene 146909 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 17 total
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 36.3% of screened cell lines
- MANE Select transcript:
NM_001265577
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:27102 |
| Approved symbol | KIF18B |
| Name | kinesin family member 18B |
| Location | 17q21.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000186185 |
| Ensembl biotype | protein_coding |
| OMIM | 614570 |
| Entrez | 146909 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 7 protein_coding, 1 retained_intron
ENST00000585687, ENST00000587309, ENST00000590129, ENST00000593135, ENST00000914031, ENST00000914032, ENST00000914033, ENST00000914034
RefSeq mRNA: 2 — MANE Select: NM_001265577
NM_001264573, NM_001265577
CCDS: CCDS45709, CCDS58555
Canonical transcript exons
ENST00000593135 — 16 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001333432 | 44926989 | 44927078 |
| ENSE00001333435 | 44928026 | 44928578 |
| ENSE00001333438 | 44928819 | 44929024 |
| ENSE00001333442 | 44931602 | 44931729 |
| ENSE00001346132 | 44926414 | 44926499 |
| ENSE00001373135 | 44934831 | 44934935 |
| ENSE00001373929 | 44934233 | 44934430 |
| ENSE00001375404 | 44936032 | 44936358 |
| ENSE00001379110 | 44935259 | 44935416 |
| ENSE00001380539 | 44934507 | 44934617 |
| ENSE00001387309 | 44933923 | 44934099 |
| ENSE00001558686 | 44932673 | 44932773 |
| ENSE00002828821 | 44924711 | 44926186 |
| ENSE00002905319 | 44932056 | 44932206 |
| ENSE00002936573 | 44947628 | 44947773 |
| ENSE00003499773 | 44932912 | 44932986 |
Expression profiles
Bgee: expression breadth ubiquitous, 186 present calls, max score 89.46.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 7.4970 / max 69.1848, expressed in 1218 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 166480 | 6.9538 | 1154 |
| 166479 | 0.3427 | 185 |
| 166478 | 0.2004 | 69 |
Top tissues by expression
272 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| trabecular bone tissue | UBERON:0002483 | 89.46 | gold quality |
| ventricular zone | UBERON:0003053 | 89.44 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 87.94 | silver quality |
| esophagus squamous epithelium | UBERON:0006920 | 85.01 | gold quality |
| secondary oocyte | CL:0000655 | 84.80 | gold quality |
| embryo | UBERON:0000922 | 84.76 | gold quality |
| squamous epithelium | UBERON:0006914 | 84.51 | gold quality |
| oocyte | CL:0000023 | 83.39 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 82.86 | gold quality |
| thymus | UBERON:0002370 | 82.76 | gold quality |
| ganglionic eminence | UBERON:0004023 | 82.48 | gold quality |
| gingival epithelium | UBERON:0001949 | 81.98 | silver quality |
| lower esophagus mucosa | UBERON:0035834 | 80.26 | gold quality |
| bone marrow | UBERON:0002371 | 80.07 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 80.00 | gold quality |
| gingiva | UBERON:0001828 | 78.47 | silver quality |
| hair follicle | UBERON:0002073 | 77.57 | silver quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 77.29 | gold quality |
| stromal cell of endometrium | CL:0002255 | 77.07 | gold quality |
| bone marrow cell | CL:0002092 | 76.69 | silver quality |
| tibia | UBERON:0000979 | 75.96 | gold quality |
| esophagus mucosa | UBERON:0002469 | 75.51 | gold quality |
| oral cavity | UBERON:0000167 | 74.79 | gold quality |
| vermiform appendix | UBERON:0001154 | 74.57 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 74.55 | silver quality |
| tongue squamous epithelium | UBERON:0006919 | 74.52 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 74.40 | gold quality |
| amniotic fluid | UBERON:0000173 | 73.05 | silver quality |
| cartilage tissue | UBERON:0002418 | 72.81 | silver quality |
| caecum | UBERON:0001153 | 70.65 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6678 | yes | 9.90 |
| E-ANND-3 | yes | 3.99 |
Regulation
Is transcription factor: no
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 36.3% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 23)
- the expression of KIF18B is regulated in a cell cycle-dependent manner and therefore may play an important role(s) in cell division. (PMID:20600703)
- Kif18B is a new microtubule dynamics regulatory protein that interacts with EB1 to control astral microtubule length (PMID:21737685)
- Results uncover a novel role for Aurora A/B kinases in regulating spindle MT dynamics through Kif18b-MCAK and suggest that the Kif18b-MCAK complex constitutes the major MT plus-end depolymerizing activity in mitotic cells. (PMID:21820309)
- High KIF18B expression is associated with neoplasms. (PMID:25236463)
- Kif18B is only modestly processive and that the motor switches frequently between directed and diffusive modes of motility. (PMID:26150501)
- we demonstrate that Kif18b shortens microtubules by increasing the catastrophe rate of dynamic microtubules. Overall, our work reveals that Kif18b uses its motile properties to reach microtubule ends, where it regulates astral microtubule length to ensure spindle centering. (PMID:29661912)
- Bioinformatics Analysis Suggests the Combined Expression of AURKB and KIF18B Being an Important Event in the Development of Clear Cell Renal Cell Carcinoma. (PMID:31489573)
- KIF18B is highly expressed in cutaneous melanoma and this overexpression is correlated with a worse prognosis. (PMID:31617652)
- KIF18B might promote lung adenocarcinoma cell proliferation, migration, and invasion by activating Rac1 and mediating the AKT/mTOR signaling pathway. (PMID:31759406)
- KIF18B promotes the proliferation of pancreatic ductal adenocarcinoma via activating the expression of CDCA8. (PMID:31875977)
- KIF18B promotes hepatocellular carcinoma progression through activating Wnt/beta-catenin-signaling pathway. (PMID:32052444)
- Role of kif2c, A Gene Related to ALL Relapse, in Embryonic Hematopoiesis in Zebrafish. (PMID:32354205)
- KIF18B promotes tumor progression in osteosarcoma by activating beta-catenin. (PMID:32587775)
- Silencing KIF18B enhances radiosensitivity: identification of a promising therapeutic target in sarcoma. (PMID:33038765)
- Kinesin family member 18B regulates the proliferation and invasion of human prostate cancer cells. (PMID:33753726)
- Silencing of KIF18B restricts proliferation and invasion and enhances the chemosensitivity of breast cancer via modulating Akt/GSK-3beta/beta-catenin pathway. (PMID:34058791)
- The nuclear kinesin KIF18B promotes 53BP1-mediated DNA double-strand break repair. (PMID:34192545)
- KIF18B as a regulator in tumor microenvironment accelerates tumor progression and triggers poor outcome in hepatocellular carcinoma. (PMID:34217812)
- KIF18b-dependent hypomethylation of PARPBP gene promoter enhances oxaliplatin resistance in colorectal cancer. (PMID:34508743)
- miR-139-3p/Kinesin family member 18B axis suppresses malignant progression of gastric cancer. (PMID:35137670)
- Upregulation of KIF18B facilitates malignant phenotype of esophageal squamous cell carcinoma by activating CDCA8/mTORC1 pathway. (PMID:36085568)
- Kinesin Family Member B18 Is Related to Gastric Mucin Phenotype and Contributes to Gastric Cancer Progression by Regulating Epithelial-Mesenchymal Transition. (PMID:37812924)
- Differential Expression of KIF18B in Gastric Cancer and Its Role in Chemotherapy Sensitivity. (PMID:38305287)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Kif18b | ENSMUSG00000051378 |
| rattus_norvegicus | Kif18b | ENSRNOG00000021713 |
Paralogs (41): KIF1B (ENSG00000054523), KIF26A (ENSG00000066735), KIF2A (ENSG00000068796), KIF22 (ENSG00000079616), KIF3C (ENSG00000084731), KIF9 (ENSG00000088727), KIF16B (ENSG00000089177), KIF4A (ENSG00000090889), KIF3B (ENSG00000101350), KIF20A (ENSG00000112984), KIF21B (ENSG00000116852), KIF17 (ENSG00000117245), KIF14 (ENSG00000118193), KIF18A (ENSG00000121621), KIF25 (ENSG00000125337), KIF1C (ENSG00000129250), KIF1A (ENSG00000130294), KIF3A (ENSG00000131437), KIF12 (ENSG00000136883), KIF13A (ENSG00000137177), KIF23 (ENSG00000137807), KIF11 (ENSG00000138160), CENPE (ENSG00000138778), KIF21A (ENSG00000139116), KIFC3 (ENSG00000140859), KIF2B (ENSG00000141200), KIF2C (ENSG00000142945), KIF5A (ENSG00000155980), KIF26B (ENSG00000162849), KIF15 (ENSG00000163808), KIF6 (ENSG00000164627), KIF27 (ENSG00000165115), KIF7 (ENSG00000166813), KIFC2 (ENSG00000167702), KIF5C (ENSG00000168280), KIF5B (ENSG00000170759), KIF24 (ENSG00000186638), KIF19 (ENSG00000196169), KIF13B (ENSG00000197892), KIF4B (ENSG00000226650)
Protein
Protein identifiers
Kinesin-like protein KIF18B — Q86Y91 (reviewed: Q86Y91)
All UniProt accessions (2): A0A494BYR6, Q86Y91
UniProt curated annotations — full annotation on UniProt →
Function. In complex with KIF2C, constitutes the major microtubule plus-end depolymerizing activity in mitotic cells. Its major role may be to transport KIF2C and/or MAPRE1 along microtubules.
Subunit / interactions. Interacts with MAPRE1; this interaction is required for efficient accumulation at microtubule plus ends. Interacts with KIF2C at microtubule tips; this interaction increases the affinity of both partners for microtubule plus ends and is required for robust microtubule depolymerization. KIF2C phosphorylation by AURKA or AURKB strongly reduces KIF18B-binding.
Subcellular location. Nucleus. Cytoplasm. Cytoskeleton.
Tissue specificity. Shows a prominent expression in the amygdala.
Similarity. Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q86Y91-5 | 1 | yes |
| Q86Y91-6 | 2 |
RefSeq proteins (2): NP_001251503, NP_001252506* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001752 | Kinesin_motor_dom | Domain |
| IPR019821 | Kinesin_motor_CS | Conserved_site |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR027640 | Kinesin-like_fam | Family |
| IPR036961 | Kinesin_motor_dom_sf | Homologous_superfamily |
Pfam: PF00225
UniProt features (31 total): modified residue 10, region of interest 6, short sequence motif 4, compositionally biased region 3, splice variant 3, chain 1, domain 1, binding site 1, sequence variant 1, coiled-coil region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q86Y91-F1 | 62.96 | 0.31 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (1): 109–116
Post-translational modifications (10): 404, 417, 452, 480, 558, 633, 639, 662, 674, 822
Function
Pathways and Gene Ontology
Reactome pathways
8 pathways
| ID | Pathway |
|---|---|
| R-HSA-6811434 | COPI-dependent Golgi-to-ER retrograde traffic |
| R-HSA-983189 | Kinesins |
| R-HSA-109582 | Hemostasis |
| R-HSA-199991 | Membrane Trafficking |
| R-HSA-5653656 | Vesicle-mediated transport |
| R-HSA-6811442 | Intra-Golgi and retrograde Golgi-to-ER traffic |
| R-HSA-8856688 | Golgi-to-ER retrograde transport |
| R-HSA-983231 | Factors involved in megakaryocyte development and platelet production |
MSigDB gene sets: 240 (showing top):
GOBP_CHROMOSOME_ORGANIZATION, HORIUCHI_WTAP_TARGETS_DN, BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, GNF2_CENPF, GOCC_KINESIN_COMPLEX, GNF2_H2AFX, MITSIADES_RESPONSE_TO_APLIDIN_DN, REACTOME_MEMBRANE_TRAFFICKING, GNF2_RRM2, GNF2_RRM1, GNF2_HMMR, GOBP_ORGANELLE_FISSION, GOBP_MICROTUBULE_DEPOLYMERIZATION, GNF2_SMC4L1, FISCHER_G2_M_CELL_CYCLE
GO Biological Process (6): mitotic sister chromatid segregation (GO:0000070), mitotic cell cycle (GO:0000278), microtubule-based movement (GO:0007018), microtubule depolymerization (GO:0007019), cell division (GO:0051301), regulation of cell division (GO:0051302)
GO Molecular Function (9): cytoskeletal motor activity (GO:0003774), ATP binding (GO:0005524), microtubule binding (GO:0008017), plus-end-directed microtubule motor activity (GO:0008574), ATP hydrolysis activity (GO:0016887), kinesin binding (GO:0019894), nucleotide binding (GO:0000166), microtubule motor activity (GO:0003777), protein binding (GO:0005515)
GO Cellular Component (15): astral microtubule (GO:0000235), nucleus (GO:0005634), nucleoplasm (GO:0005654), nucleolus (GO:0005730), cytoplasm (GO:0005737), cytosol (GO:0005829), kinesin complex (GO:0005871), nuclear body (GO:0016604), microtubule plus-end (GO:0035371), mitotic spindle astral microtubule (GO:0061673), mitotic spindle midzone (GO:1990023), microtubule end (GO:1990752), cytoskeleton (GO:0005856), microtubule (GO:0005874), spindle microtubule (GO:0005876)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| Golgi-to-ER retrograde transport | 1 |
| Factors involved in megakaryocyte development and platelet production | 1 |
| Vesicle-mediated transport | 1 |
| Membrane Trafficking | 1 |
| Intra-Golgi and retrograde Golgi-to-ER traffic | 1 |
| Hemostasis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| intracellular membraneless organelle | 3 |
| mitotic nuclear division | 2 |
| ATP-dependent activity | 2 |
| nuclear lumen | 2 |
| mitotic spindle | 2 |
| microtubule | 2 |
| sister chromatid segregation | 1 |
| mitotic cell cycle process | 1 |
| cell cycle | 1 |
| microtubule-based process | 1 |
| microtubule polymerization or depolymerization | 1 |
| protein depolymerization | 1 |
| supramolecular fiber organization | 1 |
| cellular process | 1 |
| regulation of cellular process | 1 |
| cell division | 1 |
| molecular_function | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| tubulin binding | 1 |
| microtubule motor activity | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| cytoskeletal protein binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| cytoskeletal motor activity | 1 |
| polypeptide conformation or assembly isomerase activity | 1 |
| binding | 1 |
| aster | 1 |
| spindle microtubule | 1 |
| cytoplasmic microtubule | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| microtubule associated complex | 1 |
| nucleoplasm | 1 |
| microtubule end | 1 |
| astral microtubule | 1 |
| spindle midzone | 1 |
Protein interactions and networks
STRING
1153 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| KIF18B | KIF2C | Q99661 | 845 |
| KIF18B | CIB3 | Q96Q77 | 653 |
| KIF18B | HJURP | Q8NCD3 | 607 |
| KIF18B | UBE2C | O00762 | 589 |
| KIF18B | CEP55 | Q53EZ4 | 586 |
| KIF18B | NUF2 | Q9BZD4 | 568 |
| KIF18B | DLGAP5 | Q15398 | 556 |
| KIF18B | MAPRE1 | Q15691 | 533 |
| KIF18B | BIRC5 | O15392 | 523 |
| KIF18B | CDCA8 | Q53HL2 | 512 |
| KIF18B | KIF4A | O95239 | 506 |
| KIF18B | KIF23 | Q02241 | 504 |
| KIF18B | MELK | Q14680 | 503 |
| KIF18B | BUB1B | O60566 | 478 |
| KIF18B | TPX2 | Q9ULW0 | 477 |
IntAct
59 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAPRE1 | CLASP2 | psi-mi:“MI:0914”(association) | 0.850 |
| NUP50 | KPNA4 | psi-mi:“MI:0914”(association) | 0.830 |
| IMP3 | MPHOSPH10 | psi-mi:“MI:0914”(association) | 0.670 |
| KIFBP | KIF3C | psi-mi:“MI:0914”(association) | 0.530 |
| KIF2B | BACH1 | psi-mi:“MI:0914”(association) | 0.530 |
| TXLNB | LAMC1 | psi-mi:“MI:0914”(association) | 0.530 |
| KPNB1 | POM121C | psi-mi:“MI:0914”(association) | 0.530 |
| NUP62 | RGPD8 | psi-mi:“MI:0914”(association) | 0.530 |
| PNMA2 | CCDC85C | psi-mi:“MI:0914”(association) | 0.530 |
| S100A4 | OIP5 | psi-mi:“MI:0914”(association) | 0.530 |
| H3C1 | SMCHD1 | psi-mi:“MI:2364”(proximity) | 0.410 |
| KIF18B | FLOT2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Ppp1cb | MYO1C | psi-mi:“MI:0914”(association) | 0.350 |
| Cdc23 | ANAPC15 | psi-mi:“MI:0914”(association) | 0.350 |
| MAPRE1 | CTNNB1 | psi-mi:“MI:0914”(association) | 0.350 |
| Mapre1 | TPM1 | psi-mi:“MI:0914”(association) | 0.350 |
| LTN1 | KIF2A | psi-mi:“MI:0914”(association) | 0.350 |
| PPP1CB | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| MKI67 | ARHGAP10 | psi-mi:“MI:0914”(association) | 0.350 |
| Prdm16 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| P4HA2 | CCDC85C | psi-mi:“MI:0914”(association) | 0.350 |
| PLOD1 | COL25A1 | psi-mi:“MI:0914”(association) | 0.350 |
| MAPRE1 | CLASP2 | psi-mi:“MI:0914”(association) | 0.350 |
| NELL2 | MATN2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (96): KIF18B (Affinity Capture-RNA), KIF18B (Affinity Capture-RNA), KIF18B (Affinity Capture-MS), KIF18B (Affinity Capture-MS), KIF18B (Proximity Label-MS), KIF18B (Proximity Label-MS), KIF18B (Affinity Capture-MS), KIF18B (Affinity Capture-MS), KIF18B (Affinity Capture-MS), KIF18B (Affinity Capture-MS), KIF18B (Affinity Capture-MS), KIF18B (Affinity Capture-MS), KIF18B (Affinity Capture-MS), KIF18B (Affinity Capture-MS), KIF18B (Affinity Capture-MS)
ESM2 similar proteins: A0JNH6, A0JNT9, A1A5D9, B7ZNG0, O35071, O35231, O35787, O43896, O95996, P58660, Q2M1P5, Q2TAC6, Q3TMW1, Q3UMT1, Q3UP38, Q3V0F0, Q4KLL9, Q58G59, Q5XI63, Q5XIS1, Q5ZLK6, Q63312, Q6NSJ2, Q6PFD6, Q7M6Z4, Q7M6Z5, Q80TF6, Q80U38, Q80VM7, Q86Y91, Q8C2K5, Q8CHW5, Q8CI12, Q8K330, Q8N283, Q8TDY4, Q8TE77, Q8TF21, Q90640, Q96FN5
Diamond homologs: A0A068FIK2, A0JN40, A1ZAJ2, A8BB91, A8BKD1, B1AVY7, B7ZC32, B9FUF9, B9GE13, D3YXS5, F1M4A4, F1QN54, F4J1U4, F4K0J3, F8WLE0, L0N7N1, O14782, O15066, O35066, O35071, O35787, O43093, O43896, O55165, O60282, O60333, O88658, O95239, P17210, P23678, P28738, P28741, P33173, P33174, P33175, P33176, P34540, P46863, P46865, P46867
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| KIF18B | up-regulates | “Plus-end directed sliding movement” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 78 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| NS1 Mediated Effects on Host Pathways | 6 | 35.0× | 7e-06 |
| ISG15 antiviral mechanism | 6 | 18.4× | 2e-04 |
| Mitotic Spindle Checkpoint | 5 | 16.2× | 8e-04 |
| HCMV Late Events | 6 | 12.1× | 8e-04 |
| Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal | 5 | 11.9× | 2e-03 |
| Mitotic Metaphase and Anaphase | 6 | 11.8× | 8e-04 |
| Mitotic Anaphase | 6 | 11.8× | 8e-04 |
| HCMV Early Events | 6 | 9.9× | 1e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| protein import into nucleus | 6 | 12.7× | 2e-03 |
| cell division | 9 | 6.1× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
17 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 1 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2529 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:44928817:A:AC | donor_gain | 1.0000 |
| 17:44928818:C:CC | donor_gain | 1.0000 |
| 17:44928818:CTTGA:C | donor_gain | 1.0000 |
| 17:44928878:AAGG:A | donor_gain | 1.0000 |
| 17:44928905:T:TA | donor_gain | 1.0000 |
| 17:44929020:CCAAC:C | acceptor_gain | 1.0000 |
| 17:44929021:CAAC:C | acceptor_gain | 1.0000 |
| 17:44929021:CAACC:C | acceptor_gain | 1.0000 |
| 17:44931597:CCTA:C | donor_gain | 1.0000 |
| 17:44931600:A:AC | donor_gain | 1.0000 |
| 17:44931600:ACTG:A | donor_gain | 1.0000 |
| 17:44931601:C:CA | donor_gain | 1.0000 |
| 17:44931601:CTG:C | donor_gain | 1.0000 |
| 17:44931601:CTGC:C | donor_gain | 1.0000 |
| 17:44931725:GGAAC:G | acceptor_gain | 1.0000 |
| 17:44931729:CCTAA:C | acceptor_loss | 1.0000 |
| 17:44931730:C:CC | acceptor_gain | 1.0000 |
| 17:44931730:CT:C | acceptor_loss | 1.0000 |
| 17:44932665:GAACT:G | donor_loss | 1.0000 |
| 17:44932666:AACTC:A | donor_loss | 1.0000 |
| 17:44932667:ACTCA:A | donor_loss | 1.0000 |
| 17:44932668:CTC:C | donor_loss | 1.0000 |
| 17:44932669:TCA:T | donor_loss | 1.0000 |
| 17:44932670:CACT:C | donor_loss | 1.0000 |
| 17:44932671:A:AC | donor_gain | 1.0000 |
| 17:44932672:C:CC | donor_gain | 1.0000 |
| 17:44932672:CT:C | donor_gain | 1.0000 |
| 17:44932672:CTG:C | donor_gain | 1.0000 |
| 17:44932672:CTGTT:C | donor_gain | 1.0000 |
| 17:44932770:CTAC:C | acceptor_gain | 1.0000 |
AlphaMissense
5486 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:44934067:G:C | S306R | 0.997 |
| 17:44934067:G:T | S306R | 0.997 |
| 17:44934069:T:G | S306R | 0.997 |
| 17:44933951:G:T | A345D | 0.996 |
| 17:44934078:A:C | Y303D | 0.996 |
| 17:44934925:T:A | E161V | 0.996 |
| 17:44933960:A:T | L342H | 0.995 |
| 17:44934068:C:A | S306I | 0.995 |
| 17:44934267:A:G | L284P | 0.995 |
| 17:44934050:A:T | L312H | 0.994 |
| 17:44934074:C:G | R304P | 0.994 |
| 17:44934363:A:G | L252P | 0.994 |
| 17:44934050:A:G | L312P | 0.993 |
| 17:44934053:A:G | L311P | 0.993 |
| 17:44934282:C:G | R279P | 0.993 |
| 17:44933960:A:G | L342P | 0.992 |
| 17:44933942:G:T | A348D | 0.991 |
| 17:44933952:C:G | A345P | 0.991 |
| 17:44934046:T:A | K313N | 0.991 |
| 17:44934046:T:G | K313N | 0.991 |
| 17:44934276:A:G | L281P | 0.991 |
| 17:44934357:T:C | D254G | 0.991 |
| 17:44934047:T:A | K313I | 0.990 |
| 17:44934267:A:T | L284H | 0.990 |
| 17:44934518:C:G | A226P | 0.990 |
| 17:44934910:A:G | L166P | 0.990 |
| 17:44934056:C:G | R310P | 0.989 |
| 17:44934074:C:A | R304L | 0.989 |
| 17:44934250:C:G | A290P | 0.989 |
| 17:44934354:A:G | L255P | 0.989 |
dbSNP variants (sampled 300 via entrez): RS1000234259 (17:44927946 T>C), RS1000553774 (17:44940836 G>A,C), RS1000589145 (17:44947536 A>C,G), RS1000686049 (17:44941401 C>T), RS1000959686 (17:44947207 G>C,T), RS1000983612 (17:44928463 G>C), RS1001534302 (17:44938266 T>C), RS1001618189 (17:44931936 G>A,C), RS1001862423 (17:44938156 C>T), RS1001940360 (17:44945915 A>G), RS1002328846 (17:44942513 G>A), RS1002463619 (17:44935925 G>A), RS1002592994 (17:44943335 T>C), RS1002659108 (17:44949150 G>T), RS1002856114 (17:44937026 C>T)
Disease associations
OMIM: gene MIM:614570 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004412_12 | Craniofacial microsomia | 9.000000e-06 |
| GCST008916_39 | Asthma | 8.000000e-12 |
| GCST010703_91 | Brain morphology (MOSTest) | 2.000000e-65 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004346 | neuroimaging measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066179 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,538 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1232461 | MOLIBRESIB | 2 | 1,538 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
1 potent at pChembl≥5 of 1 total, top 1 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.17 | IC50 | 6770 | nM | MOLIBRESIB |
PubChem BioAssay actives
1 with measured affinity, of 6 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide | 2179049: Inhibition of KIF18B (unknown origin) incubated for 1 hr by colloidal coomassie staining based LC-MS/MS analysis | ic50 | 6.7700 | uM |
CTD chemical–gene interactions
62 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects cotreatment, increases abundance, increases expression, decreases expression | 4 |
| Air Pollutants | increases abundance, increases oxidation, decreases expression, affects cotreatment | 3 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 3 |
| methacrylaldehyde | increases oxidation, increases abundance, affects cotreatment | 2 |
| Acetaminophen | decreases expression, increases expression | 2 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 2 |
| Arsenic | increases abundance, increases expression, affects cotreatment, decreases expression | 2 |
| Benzo(a)pyrene | increases expression, affects methylation, decreases methylation | 2 |
| Ozone | affects cotreatment, increases oxidation, increases abundance | 2 |
| Valproic Acid | decreases expression | 2 |
| FR900359 | decreases phosphorylation | 1 |
| dicrotophos | increases expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| propionaldehyde | decreases expression | 1 |
| bisphenol A | decreases expression | 1 |
| sodium arsenate | increases abundance, increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| cobaltous chloride | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| potassium chromate(VI) | increases expression | 1 |
| cupric chloride | increases expression | 1 |
| coumarin | increases phosphorylation | 1 |
| cupric oxide | decreases expression | 1 |
| diallyl trisulfide | decreases expression | 1 |
| pentanal | decreases expression | 1 |
| phenethyl isothiocyanate | decreases expression | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
ChEMBL screening assays
6 unique, capped per target: 6 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5697779 | Binding | Inhibition of KIF18B (unknown origin) assessed as fold change at 10 uM incubated for 1 hr by colloidal coomassie staining based LC-MS/MS analysis | Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia. — Nature |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_F1M5 | HyCyte A-549 KO-hKIF18B | Cancer cell line | Male |
| CVCL_F1S8 | HyCyte NCI-H1975 KO-hKIF18B | Cancer cell line | Female |
| CVCL_SU72 | HAP1 KIF18B (-) 1 | Cancer cell line | Male |
| CVCL_XQ02 | HAP1 KIF18B (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): craniofacial microsomia