KIRREL1-IT1

Summary

KIRREL1-IT1 (KIRREL1 intronic transcript 1, HGNC:41412) is a long non-coding RNA gene on chromosome 1q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41412
Approved symbol	KIRREL1-IT1
Name	KIRREL1 intronic transcript 1
Location	1q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226520
Ensembl biotype	lncRNA
Entrez	100505785
RNAcentral	URS0000ABD7E1 — lncRNA, 1519 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000419415

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419415 — 2 exons

Exon	Start	End
ENSE00001666540	158030717	158031166
ENSE00001699915	158025550	158025686

Expression profiles

Bgee: expression breadth ubiquitous, 103 present calls, max score 95.98.

Top tissues by expression

108 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	95.98	gold quality
cerebellar vermis	UBERON:0004720	85.61	gold quality
quadriceps femoris	UBERON:0001377	83.61	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	76.61	gold quality
thymus	UBERON:0002370	70.74	silver quality
tonsil	UBERON:0002372	69.80	gold quality
colonic epithelium	UBERON:0000397	68.29	gold quality
bone marrow	UBERON:0002371	68.05	silver quality
hindlimb stylopod muscle	UBERON:0004252	64.17	gold quality
skeletal muscle tissue	UBERON:0001134	63.61	silver quality
calcaneal tendon	UBERON:0003701	61.09	gold quality
liver	UBERON:0002107	58.23	silver quality
mucosa of stomach	UBERON:0001199	57.85	gold quality
urinary bladder	UBERON:0001255	56.82	silver quality
adrenal tissue	UBERON:0018303	56.19	gold quality
corpus callosum	UBERON:0002336	56.14	gold quality
kidney	UBERON:0002113	53.66	gold quality
islet of Langerhans	UBERON:0000006	52.90	gold quality
vermiform appendix	UBERON:0001154	52.78	gold quality
prefrontal cortex	UBERON:0000451	52.01	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.35	gold quality
pancreas	UBERON:0001264	51.24	gold quality
muscle of leg	UBERON:0001383	51.22	gold quality
uterine cervix	UBERON:0000002	50.82	silver quality
lung	UBERON:0002048	50.70	gold quality
cortex of kidney	UBERON:0001225	50.68	gold quality
fundus of stomach	UBERON:0001160	50.03	gold quality
stomach	UBERON:0000945	49.82	gold quality
popliteal artery	UBERON:0002250	49.79	gold quality
tibial artery	UBERON:0007610	49.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.86

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.