KLHL17
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Summary
KLHL17 (kelch like family member 17, HGNC:24023) is a protein-coding gene on chromosome 1p36.33, encoding Kelch-like protein 17 (Q6TDP4). Substrate-recognition component of some cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complexes.
The protein encoded by this gene is expressed in neurons of most regions of the brain. It contains an N-terminal BTB domain, which mediates dimerization of the protein, and a C-terminal Kelch domain, which mediates binding to F-actin. This protein may play a key role in the regulation of actin-based neuronal function.
Source: NCBI Gene 339451 — RefSeq curated summary.
At a glance
- GWAS associations: 4
- Clinical variants (ClinVar): 223 total — 1 likely-pathogenic
- Druggable target: yes
- MANE Select transcript:
NM_198317
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:24023 |
| Approved symbol | KLHL17 |
| Name | kelch like family member 17 |
| Location | 1p36.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000187961 |
| Ensembl biotype | protein_coding |
| OMIM | 619262 |
| Entrez | 339451 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 7 protein_coding, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000338591, ENST00000463212, ENST00000466300, ENST00000481067, ENST00000887516, ENST00000887517, ENST00000935109, ENST00000935110, ENST00000955597, ENST00000955598
RefSeq mRNA: 1 — MANE Select: NM_198317
NM_198317
CCDS: CCDS30550
Canonical transcript exons
ENST00000338591 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001365077 | 963109 | 963253 |
| ENSE00001368267 | 962704 | 962917 |
| ENSE00001372585 | 964963 | 965719 |
| ENSE00001375296 | 962355 | 962471 |
| ENSE00001375324 | 964107 | 964180 |
| ENSE00001727488 | 961293 | 961552 |
| ENSE00002291218 | 960584 | 960800 |
| ENSE00002988116 | 961629 | 961750 |
| ENSE00003185989 | 961826 | 962047 |
| ENSE00003479668 | 964349 | 964530 |
| ENSE00003600458 | 963337 | 963504 |
| ENSE00003624001 | 963920 | 964008 |
Expression profiles
Bgee: expression breadth ubiquitous, 161 present calls, max score 95.69.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.3599 / max 91.3195, expressed in 1638 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 41 | 6.3599 | 1638 |
Top tissues by expression
242 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus mucosa | UBERON:0035834 | 95.69 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 90.24 | gold quality |
| granulocyte | CL:0000094 | 89.55 | gold quality |
| stromal cell of endometrium | CL:0002255 | 89.04 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 88.80 | gold quality |
| cerebellar cortex | UBERON:0002129 | 88.44 | gold quality |
| metanephros cortex | UBERON:0010533 | 88.09 | gold quality |
| right testis | UBERON:0004534 | 87.10 | gold quality |
| esophagus mucosa | UBERON:0002469 | 86.97 | gold quality |
| adenohypophysis | UBERON:0002196 | 86.83 | gold quality |
| left testis | UBERON:0004533 | 86.71 | gold quality |
| endocervix | UBERON:0000458 | 86.19 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 85.98 | gold quality |
| cerebellum | UBERON:0002037 | 85.86 | gold quality |
| spleen | UBERON:0002106 | 85.64 | gold quality |
| body of stomach | UBERON:0001161 | 85.63 | gold quality |
| ectocervix | UBERON:0012249 | 85.46 | gold quality |
| esophagus | UBERON:0001043 | 85.41 | gold quality |
| right frontal lobe | UBERON:0002810 | 85.36 | gold quality |
| apex of heart | UBERON:0002098 | 85.21 | gold quality |
| minor salivary gland | UBERON:0001830 | 85.19 | gold quality |
| right lobe of liver | UBERON:0001114 | 85.17 | gold quality |
| pituitary gland | UBERON:0000007 | 85.15 | gold quality |
| lower esophagus | UBERON:0013473 | 84.86 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 84.80 | gold quality |
| skin of leg | UBERON:0001511 | 84.78 | gold quality |
| skin of abdomen | UBERON:0001416 | 84.71 | gold quality |
| cortical plate | UBERON:0005343 | 84.71 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 84.67 | gold quality |
| left uterine tube | UBERON:0001303 | 84.47 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 1.22 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
15 targeting KLHL17, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-137-3P | 99.87 | 74.74 | 2401 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-577 | 99.78 | 69.13 | 2479 |
| HSA-MIR-4757-5P | 99.12 | 64.51 | 981 |
| HSA-MIR-4477A | 98.83 | 69.75 | 2952 |
| HSA-MIR-1233-5P | 98.19 | 66.71 | 1201 |
| HSA-MIR-6778-5P | 98.19 | 66.59 | 1239 |
| HSA-MIR-6511B-5P | 97.98 | 65.64 | 823 |
| HSA-MIR-6811-5P | 97.98 | 64.96 | 848 |
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | klhl17 | ENSDARG00000037324 |
| mus_musculus | Klhl17 | ENSMUSG00002076083 |
| rattus_norvegicus | Klhl17 | ENSRNOG00000020302 |
Paralogs (54): KLHL13 (ENSG00000003096), KLHL20 (ENSG00000076321), KEAP1 (ENSG00000079999), KLHL42 (ENSG00000087448), KLHL22 (ENSG00000099910), KLHL4 (ENSG00000102271), KLHL2 (ENSG00000109466), KLHL5 (ENSG00000109790), BACH2 (ENSG00000112182), KLHL18 (ENSG00000114648), KLHL24 (ENSG00000114796), IVNS1ABP (ENSG00000116679), KLHL12 (ENSG00000117153), KLHL29 (ENSG00000119771), KBTBD7 (ENSG00000120696), KLHL7 (ENSG00000122550), KLHL31 (ENSG00000124743), KLHDC7B (ENSG00000130487), KLHL36 (ENSG00000135686), KLHL8 (ENSG00000145332), KLHL3 (ENSG00000146021), KLHL35 (ENSG00000149243), KLHL1 (ENSG00000150361), BACH1 (ENSG00000156273), KLHL40 (ENSG00000157119), KLHL10 (ENSG00000161594), KLHL21 (ENSG00000162413), KLHDC8A (ENSG00000162873), KBTBD8 (ENSG00000163376), KBTBD6 (ENSG00000165572), KLHL26 (ENSG00000167487), KLHL30 (ENSG00000168427), KBTBD2 (ENSG00000170852), KLHL6 (ENSG00000172578), KLHL15 (ENSG00000174010), KLHL38 (ENSG00000175946), KBTBD11 (ENSG00000176595), KLHDC7A (ENSG00000179023), KLHL28 (ENSG00000179454), KBTBD3 (ENSG00000182359)
Protein
Protein identifiers
Kelch-like protein 17 — Q6TDP4 (reviewed: Q6TDP4)
Alternative names: Actinfilin
All UniProt accessions (2): Q6TDP4, J3QLT4
UniProt curated annotations — full annotation on UniProt →
Function. Substrate-recognition component of some cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complexes. The BCR(KLHL17) complex mediates the ubiquitination and subsequent degradation of GLUR6. May play a role in the actin-based neuronal function.
Subunit / interactions. Interacts with F-actin; the interaction disrupts the F-actin structures and leads to marked changes of neuronal morphology. Component of a complex, composed of PDZK1, SYNGAP1, KLHL17 and NMDA receptors. Interacts directly with PDZK1 (via PDZ1 domain); the interaction is important for integrity of actin cytoskeleton structures in neurons. Interacts with DLG4 and SYNGAP1. Interacts (via kelch repeats) with GRIK2 (via C-terminus); the interaction targets GRIK2 for degradation via ubiquitin-proteasome pathway. Interacts with GRIK1. Interacts with (via BTB domain) CUL3; the interaction regulates surface GRIK2 expression.
Subcellular location. Postsynaptic density. Synapse.
Pathway. Protein modification; protein ubiquitination.
RefSeq proteins (1): NP_938073* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000210 | BTB/POZ_dom | Domain |
| IPR006652 | Kelch_1 | Repeat |
| IPR011043 | Gal_Oxase/kelch_b-propeller | Homologous_superfamily |
| IPR011333 | SKP1/BTB/POZ_sf | Homologous_superfamily |
| IPR011705 | BACK | Domain |
| IPR015915 | Kelch-typ_b-propeller | Homologous_superfamily |
| IPR017096 | BTB-kelch_protein | Family |
Pfam: PF00651, PF01344, PF07707
UniProt features (46 total): strand 27, turn 6, repeat 6, region of interest 3, domain 2, chain 1, compositionally biased region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6HRL | X-RAY DIFFRACTION | 2.6 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6TDP4-F1 | 87.45 | 0.74 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 83 (showing top):
BENPORATH_ES_WITH_H3K27ME3, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, GOMF_ACTIN_BINDING, NRF2_01, GCM_NF2, GOBP_PROTEASOMAL_PROTEIN_CATABOLIC_PROCESS, TGCCTTA_MIR124A, GOBP_PROTEIN_CATABOLIC_PROCESS, GOCC_TRANSFERASE_COMPLEX, GOCC_POSTSYNAPSE, GOCC_SYNAPSE, GOBP_PROTEOLYSIS, GOCC_CULLIN_RING_UBIQUITIN_LIGASE_COMPLEX, GOCC_CUL3_RING_UBIQUITIN_LIGASE_COMPLEX
GO Biological Process (3): protein ubiquitination (GO:0016567), actin cytoskeleton organization (GO:0030036), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161)
GO Molecular Function (4): actin binding (GO:0003779), molecular adaptor activity (GO:0060090), ubiquitin-like ligase-substrate adaptor activity (GO:1990756), protein binding (GO:0005515)
GO Cellular Component (6): obsolete extracellular space (GO:0005615), cytoplasm (GO:0005737), postsynaptic density (GO:0014069), actin cytoskeleton (GO:0015629), Cul3-RING ubiquitin ligase complex (GO:0031463), synapse (GO:0045202)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 2 |
| protein modification by small protein conjugation | 1 |
| cytoskeleton organization | 1 |
| actin filament-based process | 1 |
| ubiquitin-dependent protein catabolic process | 1 |
| proteasomal protein catabolic process | 1 |
| cytoskeletal protein binding | 1 |
| molecular_function | 1 |
| enzyme-substrate adaptor activity | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
| asymmetric synapse | 1 |
| postsynaptic specialization | 1 |
| cytoskeleton | 1 |
| cullin-RING ubiquitin ligase complex | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
928 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| KLHL17 | CUL3 | Q13618 | 715 |
| KLHL17 | GRIK1 | P39086 | 541 |
| KLHL17 | SYNGAP1 | Q96PV0 | 538 |
| KLHL17 | KARS1 | Q15046 | 527 |
| KLHL17 | SAMD11 | Q96NU1 | 511 |
| KLHL17 | GRIK2 | Q13002 | 483 |
| KLHL17 | NUDT17 | P0C025 | 452 |
| KLHL17 | PDZK1 | Q5T2W1 | 439 |
| KLHL17 | NPHP4 | O75161 | 415 |
| KLHL17 | MGAT4C | Q9UBM8 | 408 |
| KLHL17 | POLR3C | Q9BUI4 | 405 |
| KLHL17 | TDP2 | O95551 | 401 |
| KLHL17 | CHORDC1 | Q9UHD1 | 399 |
| KLHL17 | PUSL1 | Q8N0Z8 | 389 |
| KLHL17 | YJEFN3 | A6XGL0 | 370 |
IntAct
35 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TSPAN5 | ADAM10 | psi-mi:“MI:0914”(association) | 0.800 |
| PRKN | KLHL17 | psi-mi:“MI:0915”(physical association) | 0.560 |
| VHL | KLHL17 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ATXN1 | KLHL17 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TARDBP | KLHL17 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CUL3 | RHOBTB1 | psi-mi:“MI:0914”(association) | 0.530 |
| DCN | KLHL17 | psi-mi:“MI:0914”(association) | 0.530 |
| FBXL17 | KLHL2 | psi-mi:“MI:0914”(association) | 0.530 |
| CUL3 | PXDNL | psi-mi:“MI:0914”(association) | 0.350 |
| PDZK1P1 | ZBTB5 | psi-mi:“MI:0914”(association) | 0.350 |
| KLHL2 | DCTN6 | psi-mi:“MI:0914”(association) | 0.350 |
| KLHL12 | SKP1 | psi-mi:“MI:0914”(association) | 0.350 |
| FBXL17 | ZBTB5 | psi-mi:“MI:0914”(association) | 0.350 |
| KLHL2 | SKP1 | psi-mi:“MI:0914”(association) | 0.350 |
| FBXL17 | ENC1 | psi-mi:“MI:0914”(association) | 0.350 |
| PDZK1 | ZBTB5 | psi-mi:“MI:0914”(association) | 0.350 |
| KLHL3 | CEP290 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (26): KLHL17 (Affinity Capture-MS), KLHL17 (Affinity Capture-MS), KLHL17 (Affinity Capture-MS), KLHL17 (Affinity Capture-MS), KLHL17 (Affinity Capture-MS), KLHL17 (Affinity Capture-MS), KLHL17 (Affinity Capture-MS), KLHL17 (Affinity Capture-MS), KLHL17 (Affinity Capture-MS), RABGGTA (Affinity Capture-MS), DAK (Affinity Capture-MS), KLHL17 (Affinity Capture-MS), HARS2 (Affinity Capture-MS), RHOA (Affinity Capture-MS), KLHL17 (Affinity Capture-MS)
ESM2 similar proteins: A0A2R8Q1W5, A6QQY2, B0WWP2, B3NDN0, B4HIK1, B4L0G9, B4LIG6, B4PD06, D3Z8N4, E0CZ16, E1B932, E7F6F9, E9Q4F2, F1LZ52, O94889, P28575, P57790, P59280, Q08DK3, Q14145, Q16RL8, Q2T9Z7, Q53G59, Q5R774, Q5R7B8, Q5U374, Q5ZKD9, Q5ZLD3, Q684M4, Q6DFF6, Q6JEL2, Q6JEL3, Q6NRH0, Q6TDP3, Q6TDP4, Q6ZPT1, Q7QGL0, Q80TF4, Q8BZM0, Q8K430
Diamond homologs: A0A1B8YAB1, A1YPR0, B0WWP2, B1H285, B3M9V8, B3NDN0, B4GRJ2, B4HIK1, B4J045, B4L0G9, B4LIG6, B4MXW3, B4PD06, B4QLQ2, C9JR72, D3Z8N4, E0CZ16, G3X9X1, O15062, O88939, O93567, O95365, P28575, P41182, P41183, Q08CL3, Q08DK3, Q13105, Q16RL8, Q2M0J9, Q3UQV5, Q52KB5, Q5EXX3, Q5R7B8, Q5RDY3, Q5TC79, Q5ZI33, Q5ZKD9, Q5ZM39, Q60821
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| KLHL17 | “down-regulates quantity by destabilization” | GRIK2 | binding |
| KLHL17 | “up-regulates activity” | “Cullin 3-RBX1-Skp1” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 23 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Neddylation | 5 | 14.8× | 1e-03 |
| Antigen processing: Ubiquitination & Proteasome degradation | 6 | 13.9× | 4e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| proteasome-mediated ubiquitin-dependent protein catabolic process | 8 | 19.0× | 1e-06 |
| protein ubiquitination | 8 | 15.1× | 4e-06 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
223 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 180 |
| Likely benign | 11 |
| Benign | 9 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 916564 | NM_198317.3(KLHL17):c.1682C>A (p.Ala561Glu) | Likely pathogenic |
SpliceAI
2324 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:961553:G:GG | donor_gain | 1.0000 |
| 1:961557:G:GG | donor_gain | 1.0000 |
| 1:961623:CCGCA:C | acceptor_loss | 1.0000 |
| 1:961624:CGCA:C | acceptor_loss | 1.0000 |
| 1:961625:GCA:G | acceptor_loss | 1.0000 |
| 1:961626:CA:C | acceptor_loss | 1.0000 |
| 1:961627:A:AG | acceptor_gain | 1.0000 |
| 1:961627:AGAT:A | acceptor_gain | 1.0000 |
| 1:961628:G:GG | acceptor_gain | 1.0000 |
| 1:961628:GAT:G | acceptor_gain | 1.0000 |
| 1:961628:GATG:G | acceptor_gain | 1.0000 |
| 1:961628:GATGA:G | acceptor_gain | 1.0000 |
| 1:961749:AGGTG:A | donor_loss | 1.0000 |
| 1:961750:GGTGA:G | donor_loss | 1.0000 |
| 1:961752:T:A | donor_loss | 1.0000 |
| 1:961822:GTA:G | acceptor_loss | 1.0000 |
| 1:961824:A:AG | acceptor_gain | 1.0000 |
| 1:961825:G:GG | acceptor_gain | 1.0000 |
| 1:962045:CAGGT:C | donor_loss | 1.0000 |
| 1:962046:AGGTA:A | donor_loss | 1.0000 |
| 1:962047:GGTAA:G | donor_loss | 1.0000 |
| 1:962049:T:G | donor_loss | 1.0000 |
| 1:962470:GG:G | donor_gain | 1.0000 |
| 1:962471:GG:G | donor_gain | 1.0000 |
| 1:962697:A:AG | acceptor_gain | 1.0000 |
| 1:962698:C:G | acceptor_gain | 1.0000 |
| 1:962700:CCAG:C | acceptor_loss | 1.0000 |
| 1:962702:A:AG | acceptor_gain | 1.0000 |
| 1:962702:AG:A | acceptor_loss | 1.0000 |
| 1:962703:G:A | acceptor_loss | 1.0000 |
AlphaMissense
4152 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:961463:A:T | D93V | 1.000 |
| 1:961472:T:A | L96Q | 1.000 |
| 1:961472:T:C | L96P | 1.000 |
| 1:961506:A:C | K107N | 1.000 |
| 1:961506:A:T | K107N | 1.000 |
| 1:961514:T:A | L110Q | 1.000 |
| 1:961514:T:C | L110P | 1.000 |
| 1:961517:C:A | A111D | 1.000 |
| 1:961525:A:C | S114R | 1.000 |
| 1:961527:C:A | S114R | 1.000 |
| 1:961527:C:G | S114R | 1.000 |
| 1:961531:T:A | Y116N | 1.000 |
| 1:961531:T:C | Y116H | 1.000 |
| 1:961535:T:C | F117S | 1.000 |
| 1:961547:T:C | F121S | 1.000 |
| 1:961698:T:C | L146P | 1.000 |
| 1:961706:T:C | F149L | 1.000 |
| 1:961708:T:A | F149L | 1.000 |
| 1:961708:T:G | F149L | 1.000 |
| 1:961830:T:C | L165P | 1.000 |
| 1:961833:T:A | L166H | 1.000 |
| 1:961833:T:C | L166P | 1.000 |
| 1:961839:C:A | A168D | 1.000 |
| 1:961841:G:C | A169P | 1.000 |
| 1:961842:C:A | A169D | 1.000 |
| 1:961851:T:C | L172P | 1.000 |
| 1:961866:T:A | V177D | 1.000 |
| 1:961878:G:A | C181Y | 1.000 |
| 1:961879:C:G | C181W | 1.000 |
| 1:961886:T:C | F184L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000008901 (1:958723 A>G), RS1002240891 (1:960751 C>A), RS1002374994 (1:963849 G>A,C), RS1002517738 (1:965403 C>T), RS1002623986 (1:959931 G>A), RS1002698418 (1:960887 GC>G), RS1002981641 (1:959806 G>C), RS1004230810 (1:961108 G>A), RS1004261159 (1:960833 GCCTCGGGACCTGCGCGGCCCCCGC>G), RS1004359049 (1:964021 G>A,T), RS1004472023 (1:965427 A>G), RS1004577145 (1:960060 G>A), RS1004792714 (1:964198 C>T), RS1004817842 (1:959960 C>T), RS1004863150 (1:965638 T>C)
Disease associations
OMIM: gene MIM:619262 | disease phenotypes: MIM:189960
GenCC curated gene-disease
Mondo (2): autism spectrum disorder (MONDO:0005258), esophageal atresia/tracheoesophageal fistula (MONDO:0008586)
Orphanet (2): Esophageal atresia (Orphanet:1199), NON RARE IN EUROPE: Autism (Orphanet:106)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006979_846 | Heel bone mineral density | 4.000000e-13 |
| GCST008926_5 | Lysophosphatidylethanolamine levels | 4.000000e-08 |
| GCST010206_10 | Anorectal malformation | 1.000000e-12 |
| GCST90013406_95 | Liver enzyme levels (alkaline phosphatase) | 5.000000e-11 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009270 | heel bone mineral density |
| EFO:0010225 | lysophosphatidylethanolamine measurement |
| EFO:0004533 | alkaline phosphatase measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C531835 | Esophageal atresia with or without tracheoesophageal fistula (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6196104 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs7414551 | KLHL17, PLEKHN1 | 0.00 | 0 |
CTD chemical–gene interactions
22 total (human), top 22 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| aristolochic acid I | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pirinixic acid | affects binding, decreases expression, increases activity | 1 |
| sodium arsenite | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Air Pollutants | increases abundance, affects expression | 1 |
| Arsenic | affects methylation | 1 |
| Dexamethasone | decreases expression | 1 |
| Lipopolysaccharides | affects expression, affects response to substance | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Tobacco Smoke Pollution | affects expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Vanadium | increases methylation, increases abundance | 1 |
| Antirheumatic Agents | decreases expression | 1 |
| Metals, Heavy | increases methylation, increases abundance | 1 |
| Cadmium Chloride | decreases expression | 1 |
| Acrylamide | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL6094269 | Binding | Binding affinity to KLHL17 (unknown origin) at 10 uM by thermal shift assay | Structure-Guided Conformational Restriction Leading to High-Affinity, Selective, and Cell-Active Tetrahydroisoquinoline-Based Noncovalent Keap1-Nrf2 Inhibitors. — J Med Chem |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
| NCT05146245 | PHASE4 | UNKNOWN | Safety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT01302964 | PHASE3 | COMPLETED | Mirtazapine Treatment of Anxiety in Children and Adolescents With Pervasive Developmental Disorders |
| NCT01706523 | PHASE3 | TERMINATED | Open Label Extension Study of STX209 (Arbaclofen) in Autism Spectrum Disorders |
| NCT01825798 | PHASE3 | COMPLETED | Treatment of Overweight Induced by Antipsychotic Medication in Young People With Autism Spectrum Disorders (ASD) |
| NCT01972074 | PHASE3 | COMPLETED | Behavioral and Neural Response to Memantine in Adolescents With Autism Spectrum Disorder |
| NCT02985749 | PHASE3 | COMPLETED | A Study of Oxytocin for the Treatment of Social Impairment in Individuals With High Functioning Autism Spectrum Disorder |
| NCT03197922 | PHASE3 | COMPLETED | Treatment of Encopresis in Children With Autism Spectrum Disorders |
| NCT03504917 | PHASE3 | TERMINATED | A Study of Balovaptan in Adults With Autism Spectrum Disorder With a 2-Year Open-Label Extension |
| NCT03553875 | PHASE3 | TERMINATED | Memantine for the Treatment of Social Deficits in Youth With Disorders of Impaired Social Interactions |
| NCT03640156 | PHASE3 | COMPLETED | Modulating Socially Adaptive Mirror System Functioning in Autism by Oxytocin |
| NCT03715153 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children Aged From 2 to Less Than 7 Years Old With Autism Spectrum Disorder. |
| NCT03715166 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children and Adolescents Aged From 7 to Less Than 18 Years Old With Autism Spectrum Disorder |
| NCT04233502 | PHASE3 | WITHDRAWN | Efficacy and Safety of Slenyto for Insomnia in Children With ASD |
| NCT04578756 | PHASE3 | COMPLETED | Open-Label, Flexible-dose Study to Evaluate the Long-Term Safety and Tolerability of Cariprazine in the Treatment of Pediatric Participants With Schizophrenia, Bipolar I Disorder, or Autism Spectrum Disorder |
| NCT04623398 | PHASE3 | COMPLETED | Effect of Lithium in Patients With Autism Spectrum Disorder and Phelan-McDermid Syndrome (SHANK3 Haploinsufficiency) |
| NCT04725383 | PHASE3 | TERMINATED | Amitriptyline for Repetitive Behaviors in Autism Spectrum Disorders |
| NCT05212493 | PHASE3 | COMPLETED | The Effects of Medical Cannabis in Children With Autistic Spectrum Disorder |
| NCT05361707 | PHASE3 | UNKNOWN | Evaluating the Effects of Tasimelteon in Individuals With Autism Spectrum Disorder (ASD) and Sleep Disturbances |
| NCT05439616 | PHASE3 | COMPLETED | Study of Cariprazine Oral Capsules or Solution to Assess Adverse Events and Change in Irritability Due to Autism Spectrum Disorder (ASD) in Participants Aged 5-17 Years With ASD |
| NCT06229210 | PHASE3 | RECRUITING | Safety and Tolerability Trial of Lumateperone in Pediatric Patients With Schizophrenia, Bipolar Disorder or Autism Spectrum Disorder |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): anorectal malformation, esophageal atresia/tracheoesophageal fistula