KLK13
gene geneOn this page
Also known as KLK-L4
Summary
KLK13 (kallikrein related peptidase 13, HGNC:6361) is a protein-coding gene on chromosome 19q13.41, encoding Kallikrein-13 (Q9UKR3).
Kallikreins are a subgroup of serine proteases having diverse physiological functions. Growing evidence suggests that many kallikreins are implicated in carcinogenesis and some have potential as novel cancer and other disease biomarkers. This gene is one of the fifteen kallikrein subfamily members located in a cluster on chromosome 19. Expression of this gene is regulated by steroid hormones and may be useful as a marker for breast cancer.
Source: NCBI Gene 26085 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 60 total
- Druggable target: yes
- MANE Select transcript:
NM_015596
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6361 |
| Approved symbol | KLK13 |
| Name | kallikrein related peptidase 13 |
| Location | 19q13.41 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KLK-L4 |
| Ensembl gene | ENSG00000167759 |
| Ensembl biotype | protein_coding |
| OMIM | 605505 |
| Entrez | 26085 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 5 nonsense_mediated_decay, 4 protein_coding
ENST00000156476, ENST00000335422, ENST00000376799, ENST00000441527, ENST00000595547, ENST00000595793, ENST00000596955, ENST00000601975, ENST00000602090
RefSeq mRNA: 3 — MANE Select: NM_015596
NM_001348177, NM_001348178, NM_015596
CCDS: CCDS12822, CCDS86794, CCDS86795
Canonical transcript exons
ENST00000595793 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002282156 | 51059825 | 51060093 |
| ENSE00003128780 | 51055626 | 51056775 |
| ENSE00003485015 | 51060433 | 51060619 |
| ENSE00003573735 | 51058538 | 51058674 |
| ENSE00003844395 | 51065016 | 51065092 |
Expression profiles
Bgee: expression breadth ubiquitous, 169 present calls, max score 99.65.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0956 / max 12.2105, expressed in 35 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 182370 | 0.0727 | 24 |
| 182369 | 0.0229 | 9 |
Top tissues by expression
290 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus mucosa | UBERON:0035834 | 99.65 | gold quality |
| esophagus mucosa | UBERON:0002469 | 98.75 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 97.60 | gold quality |
| gingiva | UBERON:0001828 | 95.64 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 95.40 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 95.39 | gold quality |
| oral cavity | UBERON:0000167 | 94.82 | gold quality |
| gingival epithelium | UBERON:0001949 | 94.69 | gold quality |
| body of tongue | UBERON:0011876 | 94.23 | gold quality |
| mammalian vulva | UBERON:0000997 | 93.22 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 92.29 | gold quality |
| squamous epithelium | UBERON:0006914 | 91.66 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 89.54 | gold quality |
| penis | UBERON:0000989 | 89.38 | gold quality |
| cervix epithelium | UBERON:0004801 | 87.51 | gold quality |
| tongue | UBERON:0001723 | 87.09 | gold quality |
| vagina | UBERON:0000996 | 84.97 | gold quality |
| skin of leg | UBERON:0001511 | 84.55 | gold quality |
| buccal mucosa cell | CL:0002336 | 83.92 | gold quality |
| skin of abdomen | UBERON:0001416 | 82.91 | gold quality |
| zone of skin | UBERON:0000014 | 80.87 | gold quality |
| tonsil | UBERON:0002372 | 79.75 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 79.46 | gold quality |
| esophagus | UBERON:0001043 | 79.31 | gold quality |
| amniotic fluid | UBERON:0000173 | 78.92 | gold quality |
| mouth mucosa | UBERON:0003729 | 78.10 | gold quality |
| superior surface of tongue | UBERON:0007371 | 77.95 | gold quality |
| minor salivary gland | UBERON:0001830 | 75.38 | gold quality |
| left testis | UBERON:0004533 | 73.52 | gold quality |
| right testis | UBERON:0004534 | 73.01 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 15.40 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
37 targeting KLK13, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-6891-5P | 99.98 | 66.53 | 1372 |
| HSA-MIR-3173-3P | 99.98 | 66.49 | 1217 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-1-3P | 99.93 | 72.35 | 1914 |
| HSA-MIR-206 | 99.93 | 72.50 | 1893 |
| HSA-MIR-613 | 99.91 | 71.50 | 1710 |
| HSA-MIR-4428 | 99.73 | 66.41 | 1733 |
| HSA-MIR-4802-3P | 99.72 | 70.13 | 1273 |
| HSA-MIR-378G | 99.71 | 64.90 | 1106 |
| HSA-MIR-4502 | 99.65 | 66.99 | 1021 |
| HSA-MIR-4437 | 99.52 | 65.29 | 1266 |
| HSA-MIR-6081 | 99.48 | 66.07 | 1446 |
| HSA-MIR-1324 | 99.46 | 66.57 | 1302 |
| HSA-MIR-653-5P | 99.46 | 67.35 | 1300 |
| HSA-MIR-3915 | 99.45 | 68.49 | 1905 |
| HSA-MIR-2392 | 99.43 | 67.50 | 708 |
| HSA-MIR-9986 | 98.91 | 69.28 | 1024 |
| HSA-MIR-4656 | 98.79 | 66.22 | 1306 |
| HSA-MIR-5000-3P | 98.79 | 65.63 | 1251 |
| HSA-MIR-11399 | 98.71 | 65.69 | 869 |
| HSA-MIR-1302 | 97.92 | 67.27 | 844 |
| HSA-MIR-204-3P | 97.80 | 66.84 | 1656 |
| HSA-MIR-4646-5P | 97.70 | 66.84 | 1692 |
Literature-anchored findings (GeneRIF, showing 25)
- KLK13 expression is an independent favorable prognostic marker for breast carcinoma (PMID:11986781)
- kallikrein 13 is expressed in the nonmalignant and malignant prostate, with cancer tissues demonstrating slightly lower expression (PMID:12970725)
- hK13 interacts and forms complexes with serum protease inhibitors, including alpha2-macroglobulin, alpha1-antichymotrypsin and alpha2-antiplasmin (PMID:14687906)
- Human kallikrein13 may play a role in tissue remodeling and/or tumor invasion and metastasis. (PMID:15381110)
- hK13 is expressed in several common salivary gland tumors (PMID:16847813)
- non-small-cell lung cancer patients with high KLK13 expression at the mRNA or protein level had lower overall survival (PMID:18627302)
- Combination of KLK2, 3, 13, and 14 and KLK1, 2, 5, 6, 7, 8, 10, 13, and 14 showed very strong discriminatory potential for semen liquefaction and viscosity, respectively. (PMID:19558318)
- KLK6 and KLK13 predict tumor recurrence in epithelial ovarian carcinoma. (PMID:19707197)
- This is the first study disclosing the possible clinical utility of KLK13 as a new tumor biomarker capable of predicting a favorable outcome for gastric cancer patients. (PMID:20678496)
- Serine protease of Kazal-type (SPINK6) expressed in normal human skin is a potent natural inhibitor of Kallikrein-related peptidases, KLK12 and KLK13. (PMID:21439340)
- these results reveal the enhancing effects of KLK13 on tumor cell invasion and migration, and that it may serve as a diagnostic/prognostic marker and a potential therapeutic target for lung cancer. (PMID:21596022)
- Results indicate that KLK13 may play a role in the defense of the upper digestive apparatus and in male reproductive organs. (PMID:21689719)
- Data indicate that five out of 9 SNPs in the KLK13 gene were associated with prostate cancer risk and/or aggressiveness. (PMID:21741862)
- High KLK13 expression is associated with drug response in gastric cancer. (PMID:22948777)
- KLK13 may play an important role in regulating cellular migration and invasiveness, making the loss of KLK13 a potential biomarker for early detection of lymph node metastasis in oral squamous cell carcinomas. (PMID:23371469)
- The aim of this study was to monitor serum levels of two microRNAs (miR-21 and miR-141) and three kallikreins (hK3/PSA, hK11, and hK13) before and 1, 5, and 30 days after radical prostatectomy. (PMID:24288670)
- Our results suggest that KLK13 mRNA expression constitutes a novel biomarker for the prediction of overall survival in nonsmall cell lung cancer and that its quantitative assessment in tumor tissues can aid in treatment decision making. (PMID:25677900)
- This first clinical study of KLK13 in bladder cancer reveals its deregulated expression in bladder tumors and highlights KLK13 as a promising marker for improving TaT1 patients’ prognosis following treatment. (PMID:27858162)
- Decreased KLK13 mRNA levels correlate with poor survival in esophageal squamous cell carcinoma patients. (PMID:29221724)
- There was no significant association of KLK13 and KLK14 mRNA expression with the clinical factors ascitic fluid volume or residual tumor mass. In univariate Cox regression analysis, elevated KLK13 mRNA levels were significantly linked with shorter progression-free (PFS; hazard ratio [HR] = 1.97, P = 0.020) and overall survival (OS; HR = 1.81, P = 0.041). (PMID:29546479)
- Relatively high levels of KLK13 expression in ESCC were associated with cell proliferation and correlated with tumor progression, advanced cancer stage, and poor prognosis (PMID:29582368)
- serine proteases transmembrane protein serine 11D and kallikrein-related peptidase 13 were shown as active proteases in Cervical-vaginal fluid. (PMID:30647911)
- LncRNA WT-AS inhibits metastatic ability of non-small cell lung cancer by regulating KLK13. (PMID:33015785)
- Kallikrein 13 serves as a priming protease during infection by the human coronavirus HKU1. (PMID:33234691)
- Analysis of urinary kallikrein-related peptidase 13 for monitoring bladder cancer. (PMID:34704886)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Klk13 | ENSMUSG00000054046 |
| rattus_norvegicus | Klk13 | ENSRNOG00000022353 |
Paralogs (6): CMA1 (ENSG00000092009), CTSG (ENSG00000100448), GZMH (ENSG00000100450), GZMB (ENSG00000100453), KLK6 (ENSG00000167755), AZU1 (ENSG00000172232)
Protein
Protein identifiers
Kallikrein-13 — Q9UKR3 (reviewed: Q9UKR3)
Alternative names: Kallikrein-like protein 4
All UniProt accessions (7): A0A1R3UCE9, Q9UKR3, M0R218, Q5BQ95, Q5BQ97, Q5BQ99, Q86VI7
UniProt curated annotations — full annotation on UniProt →
Subcellular location. Secreted.
Tissue specificity. Expressed in prostate, breast, testis and salivary gland.
Similarity. Belongs to the peptidase S1 family. Kallikrein subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9UKR3-1 | 1 | yes |
| Q9UKR3-2 | 2 |
RefSeq proteins (3): NP_001335106, NP_001335107, NP_056411* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001254 | Trypsin_dom | Domain |
| IPR001314 | Peptidase_S1A | Family |
| IPR009003 | Peptidase_S1_PA | Homologous_superfamily |
| IPR018114 | TRYPSIN_HIS | Active_site |
| IPR033116 | TRYPSIN_SER | Active_site |
| IPR043504 |
Pfam: PF00089
Enzyme classification (BRENDA):
- EC 3.4.21.119 — kallikrein 13 (BRENDA: 2 organisms, 40 substrates, 16 inhibitors, 8 Km, 8 kcat entries)
Substrate kinetics (BRENDA)
6 substrates with measured Km, best-characterized 6. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ABZ-KLKSSKQ-EDDNP | 0.0053–0.031 | 2 |
| ABZ-KLRSSKQ-EDDNP | 0.0012–0.0022 | 2 |
| ABZ-VAL-ARG-PHE-ARG-5-AMINO-2-NITROBENZOIC ACID | 0.018 | 1 |
| ABZ-VRFRSTG-TYR(3-NO2)-NH2 | 0.02 | 1 |
| ABZ-VRFRSTQ-TYR(3-NO2)-NH2 | 0.01 | 1 |
| ABZ-VRFRSTS-TYR(3-NO2)-NH2 | 0.015 | 1 |
UniProt features (15 total): disulfide bond 5, active site 3, glycosylation site 2, signal peptide 1, chain 1, splice variant 1, sequence variant 1, domain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UKR3-F1 | 86.73 | 0.72 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 76 (charge relay system); 124 (charge relay system); 218 (charge relay system)
Disulfide bonds (5): 157–224, 189–203, 214–239, 42–178, 61–77
Glycosylation sites (2): 30, 225
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-381426 | Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
| R-HSA-6809371 | Formation of the cornified envelope |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-6805567 | Keratinization |
MSigDB gene sets: 64 (showing top):
RNGTGGGC_UNKNOWN, GOCC_SECRETORY_GRANULE, LFA1_Q6, HNF1_Q6, GGGTGGRR_PAX4_03, CAGCTG_AP4_Q5, GOBP_PROTEIN_MATURATION, MODULE_285, BLALOCK_ALZHEIMERS_DISEASE_UP, ARGGGTTAA_UNKNOWN, PU1_Q6, HNF1_C, TGGNNNNNNKCCAR_UNKNOWN, VDR_Q3, GOCC_SECRETORY_VESICLE
GO Biological Process (3): proteolysis (GO:0006508), protein processing (GO:0016485), protein maturation (GO:0051604)
GO Molecular Function (6): serine-type endopeptidase activity (GO:0004252), hydrolase activity (GO:0016787), endopeptidase activity (GO:0004175), protein binding (GO:0005515), peptidase activity (GO:0008233), serine-type peptidase activity (GO:0008236)
GO Cellular Component (4): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), cytoplasm (GO:0005737), secretory granule (GO:0030141)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Metabolism of proteins | 1 |
| Keratinization | 1 |
| Developmental Biology | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein metabolic process | 2 |
| peptidase activity | 2 |
| cellular anatomical structure | 2 |
| proteolysis | 1 |
| protein maturation | 1 |
| gene expression | 1 |
| endopeptidase activity | 1 |
| serine-type peptidase activity | 1 |
| catalytic activity | 1 |
| binding | 1 |
| hydrolase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| serine hydrolase activity | 1 |
| intracellular anatomical structure | 1 |
| endomembrane system | 1 |
| secretory vesicle | 1 |
Protein interactions and networks
STRING
795 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| KLK13 | SIGLEC9 | Q9Y336 | 762 |
| KLK13 | SPINK6 | Q6UWN8 | 586 |
| KLK13 | SPINK5 | Q9NQ38 | 517 |
| KLK13 | SPINK7 | P58062 | 453 |
| KLK13 | SEMG2 | Q02383 | 424 |
| KLK13 | KLK14 | Q9P0G3 | 424 |
| KLK13 | GPC1 | P35052 | 415 |
| KLK13 | SERPINB13 | Q9UIV8 | 380 |
| KLK13 | CAMP | P49913 | 357 |
| KLK13 | CNFN | Q9BYD5 | 350 |
| KLK13 | TGM3 | Q08188 | 347 |
| KLK13 | CDSN | Q15517 | 346 |
| KLK13 | LCE6A | A0A183 | 334 |
| KLK13 | KRT4 | P19013 | 324 |
| KLK13 | CRNN | Q9UBG3 | 322 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| KLK13 | SERPINE2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ATG16L1 | psi-mi:“MI:0914”(association) | 0.350 | |
| KLK13 | SERPINE2 | psi-mi:“MI:0914”(association) | 0.350 |
| CCR1 | UBA6 | psi-mi:“MI:0914”(association) | 0.350 |
| FNDC5 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| KLK13 | LDLRAP1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (16): SERPINB6 (Affinity Capture-MS), SERPINE2 (Affinity Capture-MS), SERPINA3 (Reconstituted Complex), SERPINF2 (Reconstituted Complex), SERPINE2 (Affinity Capture-MS), A2M (Reconstituted Complex), SERPINB6 (Affinity Capture-MS), SERPINE2 (Affinity Capture-MS), LDLRAP1 (Affinity Capture-MS), KLK13 (Affinity Capture-MS), C12orf5 (Affinity Capture-MS), KLK13 (Affinity Capture-MS), KLK9 (Negative Genetic), KLK13 (Affinity Capture-MS), KLK13 (Affinity Capture-MS)
ESM2 similar proteins: A1L453, A2VE36, A6NIE9, A8MTI9, E5RG02, O43240, O70169, P09582, P50343, P83748, Q14B25, Q14BX2, Q16651, Q3UKY7, Q3V0Q7, Q402U7, Q571E5, Q5FBW1, Q5K2P8, Q5K2P9, Q5M8S2, Q6AXZ6, Q6BEA2, Q6IE62, Q6IE63, Q6UWB4, Q76B45, Q76HL1, Q7RTY3, Q7RTY5, Q7RTY9, Q7Z5A4, Q8BJR6, Q8BLH5, Q8K4I7, Q8VIF2, Q920S2, Q99MS4, Q9BQR3, Q9D9M0
Diamond homologs: A0A1S4GMJ4, A6NIE9, A8JUP7, G3V801, O08762, O42207, O60235, P00741, P00745, P00762, P00765, P03951, P05049, P07477, P07478, P0CW18, P15120, P16292, P16295, P19799, P29786, P29787, P35030, P35039, P69525, P79953, Q14B25, Q14BX2, Q14C59, Q1JRP2, Q27081, Q28278, Q28315, Q28412, Q29463, Q2KJ63, Q2VG86, Q5G265, Q5U405, Q6BEA2
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
60 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 56 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
751 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:51058532:CCTCA:C | donor_loss | 1.0000 |
| 19:51058533:CTCAC:C | donor_loss | 1.0000 |
| 19:51058534:TCA:T | donor_loss | 1.0000 |
| 19:51058535:CA:C | donor_loss | 1.0000 |
| 19:51058536:A:T | donor_loss | 1.0000 |
| 19:51058671:TTCA:T | acceptor_gain | 1.0000 |
| 19:51058675:C:CC | acceptor_gain | 1.0000 |
| 19:51059918:AG:A | donor_gain | 1.0000 |
| 19:51060090:CCCC:C | acceptor_gain | 1.0000 |
| 19:51060091:CCC:C | acceptor_gain | 1.0000 |
| 19:51060091:CCCC:C | acceptor_gain | 1.0000 |
| 19:51060092:CC:C | acceptor_gain | 1.0000 |
| 19:51060092:CCC:C | acceptor_gain | 1.0000 |
| 19:51060093:CC:C | acceptor_gain | 1.0000 |
| 19:51060573:A:AC | donor_gain | 1.0000 |
| 19:51060574:C:CC | donor_gain | 1.0000 |
| 19:51056774:CC:C | acceptor_gain | 0.9900 |
| 19:51056775:CC:C | acceptor_gain | 0.9900 |
| 19:51056776:C:T | acceptor_gain | 0.9900 |
| 19:51056781:T:TC | acceptor_gain | 0.9900 |
| 19:51058551:TTGCC:T | donor_gain | 0.9900 |
| 19:51058598:T:A | donor_gain | 0.9900 |
| 19:51058670:ATTCA:A | acceptor_gain | 0.9900 |
| 19:51058672:TCA:T | acceptor_gain | 0.9900 |
| 19:51058673:CA:C | acceptor_gain | 0.9900 |
| 19:51058673:CAC:C | acceptor_gain | 0.9900 |
| 19:51059823:AC:A | donor_gain | 0.9900 |
| 19:51059824:CC:C | donor_gain | 0.9900 |
| 19:51060089:GCCCC:G | acceptor_gain | 0.9900 |
| 19:51060090:CCCCC:C | acceptor_gain | 0.9900 |
AlphaMissense
1762 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:51059847:C:A | W162C | 0.999 |
| 19:51059847:C:G | W162C | 0.999 |
| 19:51059962:T:A | D124V | 0.999 |
| 19:51058575:C:G | C203S | 0.998 |
| 19:51058576:A:T | C203S | 0.998 |
| 19:51056650:C:A | W257C | 0.997 |
| 19:51056650:C:G | W257C | 0.997 |
| 19:51058617:C:G | C189S | 0.997 |
| 19:51058618:A:T | C189S | 0.997 |
| 19:51059849:A:G | W162R | 0.997 |
| 19:51059849:A:T | W162R | 0.997 |
| 19:51059962:T:G | D124A | 0.997 |
| 19:51059963:C:G | D124H | 0.997 |
| 19:51056765:C:A | G219V | 0.996 |
| 19:51056771:T:A | D217V | 0.996 |
| 19:51056771:T:G | D217A | 0.996 |
| 19:51058542:C:G | C214S | 0.996 |
| 19:51058543:A:T | C214S | 0.996 |
| 19:51058576:A:G | C203R | 0.996 |
| 19:51059963:C:A | D124Y | 0.996 |
| 19:51060441:A:C | C77W | 0.996 |
| 19:51056756:A:G | L222P | 0.995 |
| 19:51056765:C:T | G219E | 0.995 |
| 19:51056766:C:A | G219W | 0.995 |
| 19:51056769:A:G | S218P | 0.995 |
| 19:51056772:C:G | D217H | 0.995 |
| 19:51058542:C:T | C214Y | 0.995 |
| 19:51058575:C:T | C203Y | 0.995 |
| 19:51058618:A:G | C189R | 0.995 |
| 19:51059846:C:A | G163C | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000065595 (19:51055233 G>C,T), RS1000475319 (19:51067358 G>C), RS1000550319 (19:51058029 T>C), RS1000577423 (19:51061924 C>T), RS1000784158 (19:51067023 T>A), RS1001474517 (19:51056721 A>G), RS1001560544 (19:51059512 A>T), RS1001634356 (19:51062287 T>C), RS1001908119 (19:51056043 T>C), RS1002158448 (19:51059245 T>C), RS1002506229 (19:51057384 C>A,T), RS1002668352 (19:51063436 T>C,G), RS1002929708 (19:51066049 T>C), RS1002973450 (19:51060762 G>C), RS1002993349 (19:51057109 C>T)
Disease associations
OMIM: gene MIM:605505 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006585_2077 | Blood protein levels | 4.000000e-54 |
| GCST006585_958 | Blood protein levels | 3.000000e-27 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4863 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
1 potent at pChembl≥5 of 1 total, top 1 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.09 | Ki | 820 | nM | CHEMBL4070056 |
PubChem BioAssay actives
2 with measured affinity, of 14 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2R)-2-[[(2R)-2-[[2-[[2-[[2-[[(2S)-2-[[(7R,10S,13S,16S,22S,25S,28S,31R,34S,37S,45S,48S,51R)-51-acetamido-45-benzyl-10-[(2S)-butan-2-yl]-34-(4-carbamimidamidobutyl)-13-(carboxymethyl)-48-(hydroxymethyl)-22,25,37-tris[(4-hydroxyphenyl)methyl]-9,12,15,21,24,27,30,33,36,39,44,47,50-tridecaoxo-28-propan-2-yl-5,53,58-trithia-8,11,14,20,23,26,29,32,35,38,43,46,49-tridecazapentacyclo[29.25.3.13,55.016,20.040,43]hexaconta-1(56),2,55(60)-triene-7-carbonyl]amino]propanoyl]-methylamino]acetyl]-methylamino]acetyl]-methylamino]acetyl]amino]-5-carbamimidamidopentanoyl]amino]-5-carbamimidamidopentanoic acid | 1455805: Inhibition of recombinant human C-terminal polyHis-tagged KLK13 (1 to 262 residues) expressed in HEK293 cells using fluorogenic Boc-VPR-AMC peptide as substrate by fluorescence based assay | ki | 0.8200 | uM |
| sodium [(2R)-3-[[(2S)-1-[[(2S,5S,8S,11R,12S,15Z,18S,21R)-2,5-dibenzyl-8-[(2R)-butan-2-yl]-15-ethylidene-21-hydroxy-4,11-dimethyl-3,6,9,13,16,22-hexaoxo-10-oxa-1,4,7,14,17-pentazabicyclo[16.3.1]docosan-12-yl]amino]-3-methyl-1-oxobutan-2-yl]amino]-2-methoxy-3-oxopropyl] sulfate | 732086: Inhibition of Kallikrein-13 (unknown origin) using VPR-AMC substrate incubated for 15 mins prior to substrate addition measured for 2 hrs | ic50 | 10.0000 | uM |
CTD chemical–gene interactions
18 total (human), top 18 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Tobacco Smoke Pollution | affects expression, increases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| testosterone undecanoate | increases expression | 1 |
| sodium arsenite | increases abundance, affects cotreatment, decreases expression | 1 |
| 3-hydroxybenzo(a)pyrene | affects expression, increases abundance | 1 |
| 3-hydroxybenz(a)anthracene | affects expression, increases abundance | 1 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Cadmium | decreases expression, increases abundance | 1 |
| Calcitriol | increases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Lead | decreases expression | 1 |
| Nickel | increases expression | 1 |
| Polycyclic Aromatic Hydrocarbons | affects expression, increases abundance | 1 |
| Tetrachlorodibenzodioxin | increases expression | 1 |
| Tretinoin | increases expression | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Lactic Acid | decreases expression | 1 |
ChEMBL screening assays
6 unique, capped per target: 6 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2339091 | Binding | Inhibition of Kallikrein-13 (unknown origin) using VPR-AMC substrate assessed as residual activity at 10 uM incubated for 15 mins prior to substrate addition measured for 2 hrs | Potent elastase inhibitors from cyanobacteria: structural basis and mechanisms mediating cytoprotective and anti-inflammatory effects in bronchial epithelial cells. — J Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.