KLRK1

gene
On this page

Also known as NKG2DKLRNKG2-DCD314

Summary

KLRK1 (killer cell lectin like receptor K1, HGNC:18788) is a protein-coding gene on chromosome 12p13.2, encoding NKG2-D type II integral membrane protein (P26718). Functions as an activating and costimulatory receptor involved in immunosurveillance upon binding to various cellular stress-inducible ligands displayed at the surface of autologous tumor cells and virus-infected cells.

Natural killer (NK) cells are lymphocytes that can mediate lysis of certain tumor cells and virus-infected cells without previous activation. They can also regulate specific humoral and cell-mediated immunity. NK cells preferentially express several calcium-dependent (C-type) lectins, which have been implicated in the regulation of NK cell function. The NKG2 gene family is located within the NK complex, a region that contains several C-type lectin genes preferentially expressed in NK cells. This gene encodes a member of the NKG2 family. The encoded transmembrane protein is characterized by a type II membrane orientation (has an extracellular C terminus) and the presence of a C-type lectin domain. It binds to a diverse family of ligands that include MHC class I chain-related A and B proteins and UL-16 binding proteins, where ligand-receptor interactions can result in the activation of NK and T cells. The surface expression of these ligands is important for the recognition of stressed cells by the immune system, and thus this protein and its ligands are therapeutic targets for the treatment of immune diseases and cancers. Read-through transcription exists between this gene and the upstream KLRC4 (killer cell lectin-like receptor subfamily C, member 4) family member in the same cluster.

Source: NCBI Gene 22914 — RefSeq curated summary.

At a glance

  • GWAS associations: 3
  • Clinical variants (ClinVar): 2 total
  • Druggable target: yes
  • MANE Select transcript: NM_007360

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:18788
Approved symbolKLRK1
Namekiller cell lectin like receptor K1
Location12p13.2
Locus typegene with protein product
StatusApproved
AliasesNKG2D, KLR, NKG2-D, CD314
Ensembl geneENSG00000213809
Ensembl biotypeprotein_coding
OMIM611817
Entrez22914

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 2 protein_coding, 2 retained_intron, 1 nonsense_mediated_decay

ENST00000240618, ENST00000396451, ENST00000540267, ENST00000540818, ENST00000544449

RefSeq mRNA: 2 — MANE Select: NM_007360 NM_001199805, NM_007360

Canonical transcript exons

ENST00000240618 — 8 exons

ExonStartEnd
ENSE000023160091038994310390041
ENSE000034925871037813210378235
ENSE000034934581037235310373231
ENSE000035057951037855410378705
ENSE000035096971037970010379792
ENSE000036403051038877110388875
ENSE000036847541038690310387010
ENSE000036917481037944710379482

Expression profiles

Bgee: expression breadth ubiquitous, 131 present calls, max score 98.87.

FANTOM5 (CAGE): breadth broad, TPM avg 6.8736 / max 1059.7507, expressed in 207 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter IDTPM avgSamples expressed
1295175.5708191
1295180.988673
1295160.24333
2065870.049425
2065880.02169

Top tissues by expression

135 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
granulocyteCL:000009498.87gold quality
spleenUBERON:000210693.09gold quality
lymph nodeUBERON:000002993.00gold quality
bloodUBERON:000017888.87gold quality
vermiform appendixUBERON:000115487.05gold quality
small intestine Peyer’s patchUBERON:000345482.15gold quality
gall bladderUBERON:000211081.80gold quality
small intestineUBERON:000210880.75gold quality
upper lobe of left lungUBERON:000895280.11gold quality
mucosa of transverse colonUBERON:000499179.93gold quality
bone marrowUBERON:000237179.12gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047378.48gold quality
endometriumUBERON:000129577.74gold quality
duodenumUBERON:000211477.38gold quality
lungUBERON:000204877.32gold quality
omental fat padUBERON:001041477.26gold quality
right lungUBERON:000216776.92gold quality
right lobe of liverUBERON:000111476.45gold quality
rectumUBERON:000105276.29gold quality
leukocyteCL:000073876.10gold quality
right uterine tubeUBERON:000130275.99gold quality
tonsilUBERON:000237274.88gold quality
right coronary arteryUBERON:000162574.03gold quality
monocyteCL:000057674.00gold quality
body of stomachUBERON:000116173.47gold quality
bone marrow cellCL:000209273.43gold quality
adipose tissueUBERON:000101373.43gold quality
liverUBERON:000210772.33gold quality
smooth muscle tissueUBERON:000113571.53gold quality
stomachUBERON:000094571.23gold quality

Single-cell (SCXA)

Detected in 23 experiment(s), a significant marker in 20.

ExperimentMarker?Max mean expression
E-CURD-89yes898.66
E-CURD-46yes320.43
E-MTAB-9067yes247.30
E-HCAD-1yes141.06
E-HCAD-4yes115.51
E-MTAB-6701yes106.45
E-MTAB-8142yes66.28
E-MTAB-10553yes48.25
E-CURD-122yes47.23
E-HCAD-8yes40.97
E-CURD-88yes40.82
E-MTAB-9467yes38.90
E-MTAB-8410yes33.15
E-HCAD-10yes31.32
E-MTAB-6678yes30.73

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): ATM, HMBOX1, KAT7, STAT3

miRNA regulators (miRDB)

40 targeting KLRK1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-6758-5P100.0066.211470
HSA-MIR-6856-5P100.0065.471298
HSA-MIR-453199.9969.703181
HSA-MIR-34A-5P99.9971.211784
HSA-MIR-449A99.9971.051776
HSA-MIR-34C-5P99.9770.451577
HSA-MIR-449B-5P99.9770.261580
HSA-MIR-1236-3P99.9468.041695
HSA-MIR-311999.9271.342390
HSA-MIR-464899.9167.00710
HSA-MIR-6499-3P99.9066.381212
HSA-MIR-6515-3P99.8268.191933
HSA-MIR-132-3P99.7370.561424
HSA-MIR-212-3P99.7370.651424
HSA-MIR-451699.6167.783390
HSA-MIR-7152-5P99.6069.332094
HSA-MIR-239299.4367.50708
HSA-MIR-942-5P99.4168.401977
HSA-MIR-464199.2866.64744
HSA-MIR-133A-3P99.2771.531270
HSA-MIR-133B99.2771.531270
HSA-MIR-6739-3P99.2268.841843
HSA-MIR-6895-3P98.7965.69996
HSA-MIR-2115-5P98.6668.071191
HSA-MIR-6868-3P98.6369.642259
HSA-MIR-6731-3P98.6167.86749
HSA-MIR-7114-5P98.5167.871349
HSA-MIR-124898.4767.541314
HSA-MIR-532-5P98.4367.53760
HSA-MIR-6516-5P98.4270.191551

Literature-anchored findings (GeneRIF, showing 40)

  • NKG2D is the receptor for UL16-binding proteins expressed on primary natural killer cells. (PMID:11777960)
  • binding of MICA and MICB induces endocytosis and downregulation of NKG2D, and in turn severe impairment of the responsiveness of tumour-antigen-specific effector T cells (PMID:12384702)
  • Selective intracellular retention of virally induced NKG2D ligands by the human cytomegalovirus UL16 glycoprotein. (PMID:12594848)
  • Expression of this receptor, inhibited by TGF-beta1, affects NK-mediated killing of dendritic cells (PMID:12646700)
  • Results suggest that ligands appear to utilize different strategies to interact with structurally conserved elements of the consensus NKG2D binding site. (PMID:12679019)
  • ULBP4 is a novel ligand for NKG2D (ULBP4) (PMID:12732206)
  • In the thymus NKG2D may be a signal allowing newly matured CD8+ T cells to emigrate to the periphery; in thymomas there is a decreased percentage of NKG2D-positive thymocytes, which express a less mature phenotype than in normal thymus. (PMID:12902493)
  • NKG2D signalling enhances innate and adaptive immune responses (review) (PMID:14523385)
  • Cell surface organization of stress-inducible proteins ULBP and MICA that stimulate human NK cells and T cells via NKG2D. (PMID:15051759)
  • NKG2D structure, ligands, function, and tissue distribution (review) (PMID:15065764)
  • NKG2D triggering accounts for the majority of major histocompatibility complex (MHC)-unrestricted cytotoxicity of activated and expanded CD8+ T cells, likely through DAP10-mediated signaling. (PMID:15070686)
  • incubation of NK cells and LAK cells with TGF-beta1 resulted in dramatic reduction of surface NKG2D expression associated with impaired NK cytotoxicity (PMID:15187109)
  • natural cytotoxicity receptor (NCR) and NK receptor member D of the lectin-like receptor family (NKG2D) were the key NK activating receptors for bone marrow-derived myeloma cell recognition (PMID:15328155)
  • analysis of functional sites in NKG2D-MICA interaction in mouse and human (PMID:15652646)
  • NKG2D, NKp30, NKp44, and NKp46 acitvation affected by ligand-negative phenotype in bone marrow-derived progenitor cells, acquisition of cell-surface ligands during myeloid differentiation, defective expression of ligands on malignant transformation (PMID:15657183)
  • NKG2D engagement by ligand or monoclonal antibody is not sufficient to costimulate naive or effector CD8+ T cell responses in conventional T cell populations. (PMID:15699119)
  • Polymorphic MICA in HLA Class I interacts with non-polymorphic NKG2d receptor on NK cells. (PMID:15699512)
  • NKG2D serves as a costimulatory receptor for TCR induced Ca2+ mobilization and proliferation in naive CD8+ T cells (PMID:15814668)
  • tumor exosome-phenotype showed positive expression of several NKG2D ligands, important in driving the reduction in the proportion of NKG2D-positive effector cells (PMID:15885603)
  • Remarkable similarities in NKG2D function in natural killer (NK) and Vgamma9 Vdelta2 T cells may open new perspectives for Vgamma9 Vdelta2 T cell-based immunotherapy (PMID:16081780)
  • expression increased by Il-15 in NK cells (PMID:16136475)
  • Freshly isolated natural killer (NK) cells lyse porcine endothelial cells exclusively in an NKG2D-dependent fashion; lysis of porcine endothelial cells mediated by activated human NK cells depends on both NKp44 and NKG2D (PMID:16210654)
  • acute myeloid leukemia cells expressed the NKG2D receptor and its signal-transducing adaptator DAP 10, which were functional as confirmed by redirected lysis experiments (PMID:16239914)
  • NKG2D/MHC-I-related stress-inducible molecule A and/or NKG2D/UL-16 binding protein 3 engagement is responsible for the delivery of a lethal hit (PMID:16272287)
  • The role of TLR3 in the immunobiology of muscle is reported; its implications for the understanding of the pathogenesis of inflammatory myopathies or therapeutic interventions are included. (PMID:16293707)
  • soluble MHC class I chain-related molecules in pregnancy serum were able to interact with NKG2D and down-regulate the receptor on PBMC from healthy donors, with the consequent inhibition of the NKG2D-dependent cytotoxic response (PMID:16517727)
  • Engagement of MIC by NKG2D promotes spontaneous HAM/TSP T cell proliferation and, apparently, CTL activities against HTLV-1-infected T cells. (PMID:16568261)
  • down-regulation of NKG2D by soluble ULBP provides a potential mechanism by which gastric cancer cells escape NKG2D-mediated attack by the immune cells (PMID:16630603)
  • defect in cytotoxic effector function is associated with a reduced surface expression of activating NK receptors (NKp30, NKp46, and NKG2D) on CD56(dim) NK cells compared with uninfected newborns. (PMID:16690951)
  • Observations with normal peripheral blood NKG2D(+)CD8(+) T cells demonstrated unrecognized NKG2D-mediated immune functions, whereby FasL release promotes tumor cell death and NKG2D costimulation prolongs T cell survival. (PMID:16732291)
  • NKG2D and MICB in the cytotoxic NK cell immune synapse have roles in NK cell cytotoxic function (PMID:16849432)
  • NKG2D mediates xenogeneic human anti-pig endothelial cell NK cell cytotoxicity by binding to the surface of porcine endothelial cells and to porcine UL16-binding protein 1 (pULBP1). (PMID:16887974)
  • ULBP1 is a human ligand of the NKG2D receptor (PMID:16901903)
  • Recent insights into the regulation of NKG2D function, the control over NKG2D ligand expression and the role of NKG2D in tumor immunity. (PMID:16914326)
  • To be fully sensitive to triggering, optimal natural killer (NK) cell reactivity requires a threshold of NKG2D expression above that of receptor levels in resting NK cells. (PMID:17043026)
  • Functions as a prototypic costimulatory receptor in a subset of human cytomegalovirus-specific CD4+ T lymphocytes. (PMID:17109473)
  • Significant elevated levels of NKG2D mRNA could be further detected in urine sediment prior to acute rejection, suggesting this receptor as a new candidate marker for the diagnosis of acute and chronic allograft rejection. (PMID:17173658)
  • reveal distinct modes of activation of the genes for the MHC class I-related chain ligands of NKG2D and provide a molecular framework for analyses of gene regulation under different cellular insult conditions (PMID:17202358)
  • NKG2D expression may have a role in immune evasion by tumors in gastric cancer (PMID:17255258)
  • NKG2D-NKG2D ligand interactions can potentially contribute to cytotoxic responses mediated by activated immune effector cells in the inflamed central nervous system, as observed in multiple sclerosis. (PMID:17267578)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
mus_musculusKlrk1ENSMUSG00000030149
rattus_norvegicusKlrk1ENSRNOG00000061739
caenorhabditis_elegansWBGENE00009156

Paralogs (23): CLEC2D (ENSG00000069493), CD69 (ENSG00000110848), CLEC2B (ENSG00000110852), KLRB1 (ENSG00000111796), KLRD1 (ENSG00000134539), KLRC1 (ENSG00000134545), KLRG1 (ENSG00000139187), KLRF1 (ENSG00000150045), CLEC1A (ENSG00000150048), CLEC1B (ENSG00000165682), CLEC7A (ENSG00000172243), CLEC12A (ENSG00000172322), OLR1 (ENSG00000173391), KLRC4 (ENSG00000183542), CLEC2A (ENSG00000188393), KLRG2 (ENSG00000188883), CLEC9A (ENSG00000197992), KLRC2 (ENSG00000205809), KLRC3 (ENSG00000205810), CLEC2L (ENSG00000236279), CLEC12B (ENSG00000256660), KLRF2 (ENSG00000256797), CLEC5A (ENSG00000258227)

Protein

Protein identifiers

NKG2-D type II integral membrane proteinP26718 (reviewed: P26718)

Alternative names: Killer cell lectin-like receptor subfamily K member 1, NK cell receptor D, NKG2-D-activating NK receptor

All UniProt accessions (2): P26718, Q8WZ67

UniProt curated annotations — full annotation on UniProt →

Function. Functions as an activating and costimulatory receptor involved in immunosurveillance upon binding to various cellular stress-inducible ligands displayed at the surface of autologous tumor cells and virus-infected cells. Provides both stimulatory and costimulatory innate immune responses on activated killer (NK) cells, leading to cytotoxic activity. Acts as a costimulatory receptor for T-cell receptor (TCR) in CD8(+) T-cell-mediated adaptive immune responses by amplifying T-cell activation. Stimulates perforin-mediated elimination of ligand-expressing tumor cells. Signaling involves calcium influx, culminating in the expression of TNF. Participates in NK cell-mediated bone marrow graft rejection. May play a regulatory role in differentiation and survival of NK cells. Binds to ligands belonging to various subfamilies of MHC class I-related glycoproteins including MICA, MICB, RAET1E, RAET1G, RAET1L/ULBP6, ULBP1, ULBP2, ULBP3 (ULBP2>ULBP1>ULBP3) and ULBP4.

Subunit / interactions. Homodimer; disulfide-linked. Heterohexamer composed of two subunits of KLRK1 and four subunits of HCST/DAP10. Interacts (via transmembrane domain) with HCST/DAP10 (via transmembrane domain); the interaction is required for KLRK1 NK cell surface and induces NK cell-mediated cytotoxicity. Does not interact with TYROBP. Interacts with CEACAM1; recruits PTPN6 that dephosphorylates VAV1.

Subcellular location. Cell membrane.

Tissue specificity. Expressed in natural killer (NK) cells, CD8(+) alpha-beta and gamma-delta T-cells. Expressed on essentially all CD56+CD3- NK cells from freshly isolated PBMC. Expressed in interferon-producing killer dendritic cells (IKDCs).

Induction. Up-regulated by interleukin IL15 in primary NK cells.

Miscellaneous. Is not capable of signal transduction by itself, but operates through the adapter protein HCST. Some families of ligands for human and mouse KLRK1 receptors have been characterized being very similar in structure and highly likely to be orthologs. In humans, an additional distinct subfamily of ligands (MICA and MICB) differs structurally, having an extra MHC alpha 3-like domain.

Isoforms (1)

UniProt IDNamesCanonical?
P26718-11yes

RefSeq proteins (2): NP_001186734, NP_031386* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR001304C-type_lectin-likeDomain
IPR016186C-type_lectin-like/link_sfHomologous_superfamily
IPR016187CTDL_foldHomologous_superfamily
IPR033992NKR-like_CTLDDomain
IPR042169NKG2DFamily

Pfam: PF00059

UniProt features (33 total): strand 11, disulfide bond 4, turn 4, glycosylation site 3, topological domain 2, sequence variant 2, helix 2, chain 1, mutagenesis site 1, sequence conflict 1, transmembrane region 1, domain 1

Structure

Experimental structures (PDB)

22 structures.

PDBMethodResolution (Å)
8EA7X-RAY DIFFRACTION1.28
8SE6X-RAY DIFFRACTION1.36
8SE5X-RAY DIFFRACTION1.43
8EABX-RAY DIFFRACTION1.44
8EAAX-RAY DIFFRACTION1.57
8EA9X-RAY DIFFRACTION1.58
8EA5X-RAY DIFFRACTION1.63
8EA6X-RAY DIFFRACTION1.73
8EA8X-RAY DIFFRACTION1.77
4PDCX-RAY DIFFRACTION1.99
7FI9X-RAY DIFFRACTION2.16
4S0UX-RAY DIFFRACTION2.35
7FI5X-RAY DIFFRACTION2.39
1MPUX-RAY DIFFRACTION2.5
1KCGX-RAY DIFFRACTION2.6
1HYRX-RAY DIFFRACTION2.7
7FI7X-RAY DIFFRACTION2.78
7FI8X-RAY DIFFRACTION2.8
8TM2X-RAY DIFFRACTION2.85
7FI6X-RAY DIFFRACTION2.9
9DH2X-RAY DIFFRACTION2.98
8TM0X-RAY DIFFRACTION3.83

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P26718-F178.490.60

Antibody-complex structures (SAbDab): 19DH2

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Disulfide bonds (4): 127–211, 189–203, 96–105, 99–110

Glycosylation sites (3): 131, 163, 202

Mutagenesis-validated functional residues (1):

PositionPhenotype
66inhibits association with the hcst signaling dimer.

Function

Pathways and Gene Ontology

Reactome pathways

3 pathways

IDPathway
R-HSA-198933Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
R-HSA-2172127DAP12 interactions
R-HSA-2424491DAP12 signaling

MSigDB gene sets: 374 (showing top): BROWNE_HCMV_INFECTION_30MIN_DN, GOBP_REGULATION_OF_CELL_ACTIVATION, REACTOME_INNATE_IMMUNE_SYSTEM, MODULE_169, GOBP_CELL_CHEMOTAXIS, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, GOBP_CELLULAR_RESPONSE_TO_LIPID, FISCHER_G1_S_CELL_CYCLE, GOBP_CELLULAR_RESPONSE_TO_BIOTIC_STIMULUS, MODULE_45, MODULE_64, GOBP_NEGATIVE_REGULATION_OF_HYDROLASE_ACTIVITY, GOBP_LYMPHOCYTE_COSTIMULATION, GOBP_REGULATION_OF_GTPASE_ACTIVITY, GOCC_CELL_SURFACE

GO Biological Process (19): stimulatory C-type lectin receptor signaling pathway (GO:0002223), adaptive immune response (GO:0002250), nitric oxide biosynthetic process (GO:0006809), signal transduction (GO:0007165), natural killer cell activation (GO:0030101), cell differentiation (GO:0030154), T cell costimulation (GO:0031295), positive regulation of type II interferon production (GO:0032729), negative regulation of GTPase activity (GO:0034260), natural killer cell mediated cytotoxicity (GO:0042267), positive regulation of nitric oxide biosynthetic process (GO:0045429), positive regulation of natural killer cell mediated cytotoxicity (GO:0045954), defense response to Gram-positive bacterium (GO:0050830), cellular response to lipopolysaccharide (GO:0071222), negative regulation of natural killer cell chemotaxis (GO:2000502), immune system process (GO:0002376), innate immune response (GO:0045087), positive regulation of multicellular organismal process (GO:0051240), defense response to other organism (GO:0098542)

GO Molecular Function (6): carbohydrate binding (GO:0030246), MHC class Ib receptor activity (GO:0032394), signaling receptor activity (GO:0038023), MHC class I protein binding (GO:0042288), identical protein binding (GO:0042802), protein binding (GO:0005515)

GO Cellular Component (4): plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), cell surface (GO:0009986), membrane (GO:0016020)

Reactome top-level categories

Rollup of top-3 pathways:

CategoryPathways
Adaptive Immune System1
Innate Immune System1
DAP12 interactions1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
immune response2
binding2
cellular anatomical structure2
innate immune response activating cell surface receptor signaling pathway1
cellular response to lectin1
biosynthetic process1
nitric oxide metabolic process1
cell communication1
cellular process1
signaling1
regulation of cellular process1
cellular response to stimulus1
lymphocyte activation1
cellular developmental process1
lymphocyte costimulation1
positive regulation of T cell activation1
positive regulation of cytokine production1
type II interferon production1
regulation of type II interferon production1
GTPase activity1
regulation of GTPase activity1
negative regulation of biological process1
negative regulation of hydrolase activity1
leukocyte mediated cytotoxicity1
natural killer cell mediated immunity1
nitric oxide biosynthetic process1
positive regulation of biosynthetic process1
regulation of nitric oxide biosynthetic process1
positive regulation of leukocyte mediated cytotoxicity1
positive regulation of natural killer cell mediated immunity1
natural killer cell mediated cytotoxicity1
regulation of natural killer cell mediated cytotoxicity1
defense response to bacterium1
response to lipopolysaccharide1
cellular response to molecule of bacterial origin1
cellular response to lipid1
cellular response to oxygen-containing compound1
natural killer cell chemotaxis1
negative regulation of lymphocyte chemotaxis1
regulation of natural killer cell chemotaxis1

Protein interactions and networks

STRING

2234 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
KLRK1ULBP1Q9BZM6999
KLRK1MICBP79525999
KLRK1ULBP3Q9BZM4999
KLRK1ULBP2Q9BZM5999
KLRK1HCSTQ9UBK5999
KLRK1RAET1EQ8TD07998
KLRK1TYROBPO43914996
KLRK1HLA-EP13747996
KLRK1MICAP79506996
KLRK1RAET1GQ6H3X3995
KLRK1NCR1O76036983
KLRK1NECTIN2Q92692980
KLRK1NCR3O14931970
KLRK1NCR2O95944963
KLRK1RAET1LQ5VY80960

IntAct

46 interactions, top by confidence:

ABTypeScore
ULBP3KLRK1psi-mi:“MI:0407”(direct interaction)0.800
KLRK1ULBP3psi-mi:“MI:0407”(direct interaction)0.800
ULBP3KLRK1psi-mi:“MI:0915”(physical association)0.800
RAET1EKLRK1psi-mi:“MI:0407”(direct interaction)0.710
KLRK1RAET1Epsi-mi:“MI:0915”(physical association)0.710
RAET1GKLRK1psi-mi:“MI:0915”(physical association)0.700
KLRK1RAET1Gpsi-mi:“MI:0915”(physical association)0.700
KLRK1RAET1Lpsi-mi:“MI:0407”(direct interaction)0.680
KLRK1RAET1Lpsi-mi:“MI:0915”(physical association)0.680
KLRK1MICApsi-mi:“MI:0407”(direct interaction)0.620
KLRK1ULBP2psi-mi:“MI:0407”(direct interaction)0.610
KLRK1ULBP2psi-mi:“MI:0915”(physical association)0.610
ULBP2KLRK1psi-mi:“MI:0915”(physical association)0.610
KLRK1PDE4Cpsi-mi:“MI:0915”(physical association)0.560
KLRK1KLRK1psi-mi:“MI:0407”(direct interaction)0.440
KLRK1ULBP1psi-mi:“MI:0407”(direct interaction)0.440

BioGRID (24): KLRK1 (Two-hybrid), RAE1 (Reconstituted Complex), DUPD1 (Affinity Capture-MS), REEP4 (Affinity Capture-MS), SEC11A (Affinity Capture-MS), VPS52 (Affinity Capture-MS), ABCB8 (Affinity Capture-MS), KLRK1 (Affinity Capture-Western), PRKDC (Affinity Capture-MS), CBWD3 (Affinity Capture-MS), ACSL1 (Affinity Capture-MS), NRD1 (Affinity Capture-MS), PIGB (Affinity Capture-MS), RSPRY1 (Affinity Capture-MS), ATP5G1 (Affinity Capture-MS)

ESM2 similar proteins: A4KWA5, A4KWA6, A4KWA8, B2KG20, D4AD02, O54709, O70215, P26717, P26718, P27471, P27811, P27814, P37217, P61252, Q07108, Q07444, Q0H8B9, Q149M0, Q504P2, Q5DT36, Q5DT37, Q5DT39, Q5M9I1, Q5RFR2, Q60652, Q60654, Q68D85, Q6QLQ4, Q6UXN8, Q80XD9, Q80ZC8, Q8C1T8, Q8MI05, Q8MJH1, Q8VBX4, Q8VI21, Q8WXI8, Q91V08, Q925N7, Q95MI4

Diamond homologs: B2KG20, B4XSZ4, D4AD02, O54709, O70215, P0DL30, P26718, P61252, Q149M0, Q2HXU8, Q2NL33, Q38HS3, Q49BZ4, Q4TU93, Q5DT36, Q5DT39, Q64449, Q67EQ0, Q6QLQ4, Q6UXN8, Q80ZC8, Q8BRU4, Q8MJH1, Q9MZ37, Q9MZJ7, Q9UBG0, A3FM55, B4XSY4, B4XSZ2, B4XSZ3, B4XSZ5, B4XSZ6, B4XSZ7, B4XSZ9, O35778, O54707, O70156, P07897, P08290, P10716

SIGNOR signaling

1 interactions.

AEffectBMechanism
ULBP2up-regulatesKLRK1binding

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 10 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

GO biological processes:

GO termPartnersFoldFDR
positive regulation of T cell mediated cytotoxicity6306.4×7e-14
natural killer cell mediated cytotoxicity7302.5×3e-16
immune response733.0×2e-09

Disease & clinical

Clinical variants and AI predictions

ClinVar

2 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance1
Likely benign1
Benign0

Top pathogenic / likely-pathogenic (0)

SpliceAI

1226 predictions. Top by Δscore:

VariantEffectΔscore
12:10378130:A:ACdonor_gain1.0000
12:10378131:C:CCdonor_gain1.0000
12:10378131:CAGG:Cdonor_gain1.0000
12:10378702:CTTT:Cacceptor_gain1.0000
12:10379698:A:ACdonor_gain1.0000
12:10379699:C:CCdonor_gain1.0000
12:10379791:TG:Tacceptor_gain1.0000
12:10379793:C:CCacceptor_gain1.0000
12:10387006:CATCT:Cacceptor_gain1.0000
12:10387011:C:CCacceptor_gain1.0000
12:10378125:GACT:Gdonor_loss0.9900
12:10378126:ACTTA:Adonor_loss0.9900
12:10378127:CTTAC:Cdonor_loss0.9900
12:10378128:T:TCdonor_loss0.9900
12:10378128:TTAC:Tdonor_loss0.9900
12:10378129:T:TCdonor_loss0.9900
12:10378130:A:ATdonor_loss0.9900
12:10378130:AC:Adonor_loss0.9900
12:10378131:C:Tdonor_loss0.9900
12:10378131:CA:Cdonor_gain0.9900
12:10378131:CAG:Cdonor_gain0.9900
12:10378131:CAGGT:Cdonor_gain0.9900
12:10378234:TC:Tacceptor_gain0.9900
12:10378235:CC:Cacceptor_gain0.9900
12:10378236:C:Aacceptor_loss0.9900
12:10378236:C:CCacceptor_gain0.9900
12:10378237:T:Aacceptor_loss0.9900
12:10378240:T:Cacceptor_gain0.9900
12:10378551:AAC:Adonor_gain0.9900
12:10378552:A:Cdonor_gain0.9900

AlphaMissense

1451 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
12:10378161:C:AW168C0.995
12:10378161:C:GW168C0.995
12:10378203:C:AW154C0.990
12:10378203:C:GW154C0.990
12:10378674:C:AW103C0.987
12:10378674:C:GW103C0.987
12:10378614:G:CS123R0.986
12:10378614:G:TS123R0.986
12:10378616:T:GS123R0.986
12:10378623:C:AW120C0.985
12:10378623:C:GW120C0.985
12:10378163:A:GW168R0.984
12:10378163:A:TW168R0.984
12:10373133:C:GC211S0.979
12:10373134:A:TC211S0.979
12:10373199:C:GC189S0.979
12:10373200:A:TC189S0.979
12:10378603:C:GC127S0.979
12:10378604:A:TC127S0.979
12:10378652:A:CY111D0.977
12:10373198:A:CC189W0.976
12:10373132:G:CC211W0.975
12:10378602:A:CC127W0.974
12:10378205:A:GW154R0.970
12:10378205:A:TW154R0.970
12:10373157:C:GC203S0.968
12:10373158:A:TC203S0.968
12:10378195:A:GL157P0.968
12:10378603:C:TC127Y0.964
12:10373133:C:TC211Y0.962

dbSNP variants (sampled 300 via entrez): RS1000147161 (12:10381503 G>C), RS1000194817 (12:10375794 T>C), RS1000446964 (12:10389733 A>G), RS1000455309 (12:10379061 G>A,T), RS1000657951 (12:10385579 T>C,G), RS1000706439 (12:10372418 C>A,T), RS1000751081 (12:10375444 T>C), RS1000928506 (12:10385953 A>T), RS1000974249 (12:10389356 C>T), RS1001096292 (12:10382835 A>G), RS1001181698 (12:10386117 T>C), RS1001210881 (12:10375173 G>A), RS1001337093 (12:10389882 T>C), RS1001419706 (12:10372622 C>G,T), RS1001431554 (12:10389569 G>A)

Disease associations

OMIM: gene MIM:611817 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

3 associations (top):

StudyTraitp-value
GCST001762_534Obesity-related traits6.000000e-06
GCST004346_53Psoriasis4.000000e-09
GCST006104_1Interleukin-1-receptor antagonist levels1.000000e-06

EFO canonical traits (2, from GWAS)

EFO IDTrait name
EFO:0004887maximal oxygen uptake measurement
EFO:0004754interleukin 1 receptor antagonist measurement

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL5483005 (PROTEIN COMPLEX), CHEMBL5483006 (PROTEIN COMPLEX)

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB variants

1 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs1049174KLRK10.000

ChEMBL bioactivities

61 potent at pChembl≥5 of 63 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
7.00IC50100nMCHEMBL5405635
7.00IC50100nMCHEMBL5438591
7.00IC50100nMCHEMBL5400078
7.00IC50100nMCHEMBL5400409
6.70IC50200nMCHEMBL5420013
6.70IC50200nMCHEMBL5418204
6.70IC50200nMCHEMBL5397883
6.70IC50200nMCHEMBL5406023
6.70IC50200nMCHEMBL5438591
6.70IC50200nMCHEMBL5400409
6.52IC50300nMCHEMBL5421826
6.52IC50300nMCHEMBL5408363
6.52IC50300nMCHEMBL5400078
6.40IC50400nMCHEMBL5428731
6.40IC50400nMCHEMBL5434369
6.40IC50400nMCHEMBL5426771
6.40IC50400nMCHEMBL5405635
6.40IC50400nMCHEMBL5397883
6.40IC50400nMCHEMBL5406023
6.30IC50500nMCHEMBL5401653
6.30IC50500nMCHEMBL5406354
6.30IC50500nMCHEMBL5404943
6.30IC50500nMCHEMBL5420013
6.22IC50600nMCHEMBL5428731
6.16IC50700nMCHEMBL5435052
6.16IC50700nMCHEMBL5421826
6.16IC50700nMCHEMBL5418204
6.10IC50800nMCHEMBL5408363
6.05IC50900nMCHEMBL5399509
6.05IC50900nMCHEMBL5406012
6.00IC501000nMCHEMBL5411788
5.96IC501100nMCHEMBL5412456
5.96IC501100nMCHEMBL5401653
5.92IC501200nMCHEMBL5416566
5.85IC501400nMCHEMBL5434369
5.82IC501500nMCHEMBL5406354
5.82IC501500nMCHEMBL5426771
5.80IC501600nMCHEMBL5405730
5.80IC501600nMCHEMBL5407256
5.80IC501600nMCHEMBL5430627
5.77IC501700nMCHEMBL5435052
5.75IC501800nMCHEMBL5419966
5.66IC502200nMCHEMBL5433799
5.62IC502400nMCHEMBL5406012
5.60IC502500nMCHEMBL5413007
5.57IC502700nMCHEMBL5416566
5.55IC502800nMCHEMBL5399509
5.51IC503100nMCHEMBL5412456
5.51IC503100nMCHEMBL5405730
5.48IC503300nMCHEMBL5438606

PubChem BioAssay actives

122 with measured affinity, of 184 total; 30 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
N-[(1S)-2-(dimethylamino)-1-[3-methyl-5-(trifluoromethyl)phenyl]-2-oxoethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.1000uM
N-[(1S)-1-[3,4-dichloro-5-(trifluoromethyl)phenyl]-2-(dimethylamino)-2-oxoethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.1000uM
N-[(1S)-1-[4-chloro-3-(trifluoromethyl)phenyl]-2-(dimethylamino)-2-oxoethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.1000uM
N-[(1S)-1-[3-chloro-5-(trifluoromethyl)phenyl]-2-(dimethylamino)-2-oxoethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.1000uM
N-[(1S)-1-[3,5-bis(trifluoromethyl)phenyl]-2-(dimethylamino)-2-oxoethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.2000uM
N-[(1S)-2-(dimethylamino)-1-[4-fluoro-3-(trifluoromethyl)phenyl]-2-oxoethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.2000uM
N-[(1S)-1-(3,4-dichlorophenyl)-2-(dimethylamino)-2-oxoethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.2000uM
N-[(1S)-2-(dimethylamino)-1-[3-fluoro-5-(trifluoromethyl)phenyl]-2-oxoethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.2000uM
N-[(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-5-(2-methylpyrazol-3-yl)-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.3000uM
N-[(1S)-2-(dimethylamino)-1-[4-methyl-3-(trifluoromethyl)phenyl]-2-oxoethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.3000uM
N-[(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.4000uM
N-[(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-5-(3,5-dimethyl-1H-pyrazol-4-yl)-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.4000uM
N-[(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-4-[4-(trifluoromethyl)phenyl]pyridazine-3-carboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.4000uM
N-[2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-5-[2-(oxetan-3-yl)pyrazol-3-yl]-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.5000uM
N-[(1S)-1-[4-chloro-3-(trifluoromethyl)phenyl]-2-(dimethylamino)-2-oxoethyl]-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.5000uM
N-[(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-5-(2H-tetrazol-5-yl)-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.5000uM
3-N-[(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-1-N-methylsulfonyl-4-[4-(trifluoromethyl)phenyl]benzene-1,3-dicarboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.7000uM
N-[2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-5-(5-methyl-1H-pyrazol-4-yl)-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.9000uM
N-[(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-5-(1-methyltetrazol-5-yl)-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic500.9000uM
N-[(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-3-[4-(trifluoromethyl)phenyl]pyridine-2-carboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic501.0000uM
N-[(1S)-2-[(1S,5R)-6-(hydroxymethyl)-3-azabicyclo[3.1.0]hexan-3-yl]-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic501.1000uM
N-[(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic501.2000uM
N-[(1S)-2-(dimethylamino)-2-oxo-1-[3-[3-(2,2,2-trifluoroethyl)azetidin-1-yl]phenyl]ethyl]-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic501.6000uM
N-[(1S)-2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-3-[4-(trifluoromethyl)phenyl]pyridine-4-carboxamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic501.6000uM
N-[(1S)-1-(3-cyclopropylphenyl)-2-(dimethylamino)-2-oxoethyl]-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic501.8000uM
N-[2-(dimethylamino)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic502.2000uM
N-[2-oxo-2-pyrrolidin-1-yl-1-[3-(trifluoromethyl)phenyl]ethyl]-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic502.5000uM
N-[(1S)-1-(4-chlorophenyl)-2-(dimethylamino)-2-oxoethyl]-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic503.3000uM
N-[2-(azetidin-1-yl)-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic503.4000uM
N-[2-[(2R)-2-(hydroxymethyl)pyrrolidin-1-yl]-2-oxo-1-[3-(trifluoromethyl)phenyl]ethyl]-2-[4-(trifluoromethyl)phenyl]benzamide2036562: Inhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayic504.0000uM

CTD chemical–gene interactions

22 total (human), top 22 by PubMed support.

ChemicalActions (top 5)PubMed papers
cadmium sulfatedecreases expression2
Resveratrolincreases expression2
triphenyl phosphateaffects expression1
pirinixic acidaffects binding, increases activity, increases expression1
bisphenol Adecreases expression, increases methylation1
S-(1,2-dichlorovinyl)cysteineaffects response to substance, increases expression, affects cotreatment, decreases expression1
di-n-butylphosphoric acidaffects expression1
mirdametinibincreases expression, decreases reaction1
Bortezomibdecreases expression1
Arsenic Trioxideincreases response to substance1
Arsenicaffects expression1
Benzo(a)pyreneincreases methylation1
Toxic Actionsdecreases expression1
Lipopolysaccharidesdecreases expression, affects response to substance, increases expression, affects cotreatment1
Mycophenolic Aciddecreases expression1
Nickelincreases expression1
Tamoxifenaffects cotreatment, decreases expression1
Dronabinolincreases expression1
Asbestos, Serpentinedecreases expression1
Antirheumatic Agentsdecreases expression1
Okadaic Aciddecreases expression1
Raloxifene Hydrochlorideaffects cotreatment, decreases expression1

ChEMBL screening assays

2 unique, capped per target: 2 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL5390950BindingInhibition of NKG2D (unknown origin)/MICA (unknown origin) protein-protein interaction by cell-based TR-FRET assayDevelopment of small molecule inhibitors of natural killer group 2D receptor (NKG2D). — Bioorg Med Chem Lett

Cellosaurus cell lines

1 cell lines: 1 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_D8NWUbigene HCT 116 KLRK1 KOCancer cell lineMale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.