KREMEN2
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Also known as MGC10791KRM2
Summary
KREMEN2 (kringle containing transmembrane protein 2, HGNC:18797) is a protein-coding gene on chromosome 16p13.3, encoding Kremen protein 2 (Q8NCW0). Receptor for Dickkopf proteins.
This gene encodes a high-affinity dickkopf homolog 1 (DKK1) transmembrane receptor. A similar protein in mouse functions interacts with with DKK1 to block wingless (WNT)/beta-catenin signaling. The encoded protein forms a ternary membrane complex with DKK1 and the WNT receptor lipoprotein receptor-related protein 6 (LRP6), and induces rapid endocytosis and removal of LRP6 from the plasma membrane. It contains extracellular kringle, WSC, and CUB domains. Alternatively spliced transcript variants encoding distinct isoforms have been observed for this gene.
Source: NCBI Gene 79412 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 75 total
- MANE Select transcript:
NM_172229
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:18797 |
| Approved symbol | KREMEN2 |
| Name | kringle containing transmembrane protein 2 |
| Location | 16p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC10791, KRM2 |
| Ensembl gene | ENSG00000131650 |
| Ensembl biotype | protein_coding |
| OMIM | 609899 |
| Entrez | 79412 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 7 protein_coding
ENST00000303746, ENST00000319500, ENST00000571007, ENST00000572045, ENST00000575769, ENST00000575885, ENST00000924037
RefSeq mRNA: 4 — MANE Select: NM_172229
NM_001253725, NM_001253726, NM_024507, NM_172229
CCDS: CCDS10483, CCDS10484, CCDS58412, CCDS58413
Canonical transcript exons
ENST00000303746 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000901601 | 2964859 | 2965033 |
| ENSE00000901602 | 2966140 | 2966231 |
| ENSE00000901603 | 2966325 | 2966449 |
| ENSE00000901604 | 2966642 | 2966795 |
| ENSE00000901605 | 2966910 | 2967242 |
| ENSE00000901606 | 2967320 | 2967445 |
| ENSE00001279431 | 2967526 | 2967604 |
| ENSE00001906320 | 2967810 | 2968380 |
| ENSE00002647285 | 2964275 | 2964614 |
Expression profiles
Bgee: expression breadth ubiquitous, 128 present calls, max score 76.97.
FANTOM5 (CAGE): breadth broad, TPM avg 0.8223 / max 31.9352, expressed in 382 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 152341 | 0.7774 | 370 |
| 152340 | 0.0450 | 17 |
Top tissues by expression
262 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pancreatic ductal cell | CL:0002079 | 76.97 | silver quality |
| skin of abdomen | UBERON:0001416 | 71.49 | gold quality |
| skin of leg | UBERON:0001511 | 69.66 | gold quality |
| buccal mucosa cell | CL:0002336 | 69.13 | gold quality |
| zone of skin | UBERON:0000014 | 68.96 | gold quality |
| right frontal lobe | UBERON:0002810 | 68.16 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 67.89 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 67.62 | gold quality |
| cingulate cortex | UBERON:0003027 | 67.57 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 66.06 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 65.86 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 65.24 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 65.01 | gold quality |
| amygdala | UBERON:0001876 | 63.83 | gold quality |
| type B pancreatic cell | CL:0000169 | 63.65 | gold quality |
| spinal cord | UBERON:0002240 | 63.51 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 63.42 | gold quality |
| esophagus mucosa | UBERON:0002469 | 63.17 | gold quality |
| biceps brachii | UBERON:0001507 | 63.04 | gold quality |
| neocortex | UBERON:0001950 | 63.00 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 62.76 | gold quality |
| skin of hip | UBERON:0001554 | 62.74 | silver quality |
| prefrontal cortex | UBERON:0000451 | 62.68 | gold quality |
| squamous epithelium | UBERON:0006914 | 62.66 | gold quality |
| frontal cortex | UBERON:0001870 | 62.60 | gold quality |
| cerebral cortex | UBERON:0000956 | 62.55 | gold quality |
| cartilage tissue | UBERON:0002418 | 62.55 | gold quality |
| gingival epithelium | UBERON:0001949 | 62.46 | gold quality |
| Ammon’s horn | UBERON:0001954 | 61.84 | gold quality |
| gingiva | UBERON:0001828 | 61.67 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.98 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 3)
- The mRNA expression levels of DKK-1 binding receptor LRP5/6 and Krm1/2 in SCs from patients with MM were significantly higher than those in myeloma cells and in SCs from healthy donors. (PMID:20846389)
- KREMEN2 is upregulated in cancers, consistent with its role in inhibiting Kremen1-induced cell death (PMID:31069116)
- N[6]-Methyladenosine-Modified KREMEN2 Promotes Tumorigenesis and Malignant Progression of High-Grade Serous Ovarian Cancer. (PMID:38615731)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Kremen2 | ENSMUSG00000040680 |
| rattus_norvegicus | Kremen2 | ENSRNOG00000004122 |
Paralogs (1): KREMEN1 (ENSG00000183762)
Protein
Protein identifiers
Kremen protein 2 — Q8NCW0 (reviewed: Q8NCW0)
Alternative names: Dickkopf receptor 2, Kringle domain-containing transmembrane protein 2, Kringle-containing protein marking the eye and the nose
All UniProt accessions (1): Q8NCW0
UniProt curated annotations — full annotation on UniProt →
Function. Receptor for Dickkopf proteins. Cooperates with DKK1/2 to inhibit Wnt/beta-catenin signaling by promoting the endocytosis of Wnt receptors LRP5 and LRP6. Plays a role in limb development; attenuates Wnt signaling in the developing limb to allow normal limb patterning and can also negatively regulate bone formation.
Subunit / interactions. Interacts with ERLEC1. Forms a ternary complex with DKK1 and LRP6.
Subcellular location. Membrane.
Domain organisation. Binding to ERLEC1 is mediated by the oligosaccharides linked to the kringle domain.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8NCW0-1 | 1 | yes |
| Q8NCW0-2 | 2, Kremen2a | |
| Q8NCW0-3 | 3, Kremen2b | |
| Q8NCW0-4 | 4, Kremen2c | |
| Q8NCW0-5 | 5 | |
| Q8NCW0-6 | 6 |
RefSeq proteins (4): NP_001240654, NP_001240655, NP_078783, NP_757384* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000001 | Kringle | Domain |
| IPR000859 | CUB_dom | Domain |
| IPR002889 | WSC_carb-bd | Domain |
| IPR013806 | Kringle-like | Homologous_superfamily |
| IPR017076 | Kremen | Family |
| IPR018056 | Kringle_CS | Conserved_site |
| IPR035914 | Sperma_CUB_dom_sf | Homologous_superfamily |
| IPR038178 | Kringle_sf | Homologous_superfamily |
| IPR051836 | Kremen_rcpt | Family |
Pfam: PF00051, PF00431, PF01822
UniProt features (28 total): splice variant 8, glycosylation site 4, disulfide bond 4, domain 3, topological domain 2, sequence conflict 2, signal peptide 1, chain 1, sequence variant 1, transmembrane region 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8NCW0-F1 | 77.77 | 0.61 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (4): 36–119, 60–100, 89–114, 219–245
Glycosylation sites (4): 222, 244, 351, 49
Function
Pathways and Gene Ontology
Reactome pathways
8 pathways
| ID | Pathway |
|---|---|
| R-HSA-201681 | TCF dependent signaling in response to WNT |
| R-HSA-3772470 | Negative regulation of TCF-dependent signaling by WNT ligand antagonists |
| R-HSA-5339717 | Signaling by LRP5 mutants |
| R-HSA-162582 | Signal Transduction |
| R-HSA-1643685 | Disease |
| R-HSA-195721 | Signaling by WNT |
| R-HSA-4791275 | Signaling by WNT in cancer |
| R-HSA-5663202 | Diseases of signal transduction by growth factor receptors and second messengers |
MSigDB gene sets: 70 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_MCMV_INFECTION_UP, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, AREB6_03, AREB6_01, GOBP_NEGATIVE_REGULATION_OF_MULTICELLULAR_ORGANISMAL_PROCESS, DOANE_RESPONSE_TO_ANDROGEN_DN, GOBP_APPENDAGE_DEVELOPMENT, GOBP_OSSIFICATION, DODD_NASOPHARYNGEAL_CARCINOMA_UP, TGGNNNNNNKCCAR_UNKNOWN, EGR1_01, GOBP_NEGATIVE_REGULATION_OF_OSSIFICATION, GOBP_REGULATION_OF_OSSIFICATION, GOCC_EARLY_ENDOSOME_MEMBRANE, NIKOLSKY_BREAST_CANCER_16P13_AMPLICON
GO Biological Process (4): signal transduction (GO:0007165), Wnt signaling pathway (GO:0016055), negative regulation of ossification (GO:0030279), limb development (GO:0060173)
GO Molecular Function (1): transmembrane signaling receptor activity (GO:0004888)
GO Cellular Component (3): plasma membrane (GO:0005886), early endosome membrane (GO:0031901), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| Signaling by WNT | 1 |
| TCF dependent signaling in response to WNT | 1 |
| Signaling by WNT in cancer | 1 |
| Signal Transduction | 1 |
| Diseases of signal transduction by growth factor receptors and second messengers | 1 |
| Disease | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| cell surface receptor signaling pathway | 1 |
| ossification | 1 |
| regulation of ossification | 1 |
| negative regulation of multicellular organismal process | 1 |
| appendage development | 1 |
| signaling receptor activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| early endosome | 1 |
| endosome membrane | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
872 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| KREMEN2 | DKK1 | O94907 | 998 |
| KREMEN2 | ERLEC1 | Q96DZ1 | 916 |
| KREMEN2 | LRP6 | O75581 | 757 |
| KREMEN2 | LRP5 | O75197 | 736 |
| KREMEN2 | DKK2 | Q9UBU2 | 735 |
| KREMEN2 | RSPO1 | Q2MKA7 | 713 |
| KREMEN2 | DKK4 | Q9UBT3 | 701 |
| KREMEN2 | WNT1 | P04628 | 673 |
| KREMEN2 | DKK3 | Q9UBP4 | 667 |
| KREMEN2 | CTNNB1 | P35222 | 660 |
| KREMEN2 | WNT5A | P41221 | 543 |
| KREMEN2 | SFRP2 | Q96HF1 | 543 |
| KREMEN2 | KREMEN1 | Q96MU8 | 534 |
| KREMEN2 | CANX | P27824 | 468 |
| KREMEN2 | SOST | Q9BQB4 | 441 |
IntAct
27 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| FBXO6 | MAN2B1 | psi-mi:“MI:0914”(association) | 0.640 |
| KLK5 | DENND11 | psi-mi:“MI:0914”(association) | 0.640 |
| EDN3 | MGRN1 | psi-mi:“MI:0914”(association) | 0.530 |
| CLEC2D | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| BTNL2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| BRICD5 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| LY86 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| IL5RA | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| NCR3 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| CFC1 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| EDN3 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| DKK1 | TK2 | psi-mi:“MI:0914”(association) | 0.350 |
| ELSPBP1 | QSOX1 | psi-mi:“MI:0914”(association) | 0.350 |
| PRG2 | QSOX1 | psi-mi:“MI:0914”(association) | 0.350 |
| OIT3 | WNT10B | psi-mi:“MI:0914”(association) | 0.350 |
| ALPP | MAN2B1 | psi-mi:“MI:0914”(association) | 0.350 |
| KLK15 | APAF1 | psi-mi:“MI:0914”(association) | 0.350 |
| GXYLT1 | CLGN | psi-mi:“MI:0914”(association) | 0.350 |
| ST8SIA5 | CLGN | psi-mi:“MI:0914”(association) | 0.350 |
| VEGFB | NPC1 | psi-mi:“MI:0914”(association) | 0.350 |
| TM2D3 | SPINT1 | psi-mi:“MI:0914”(association) | 0.350 |
| WNT7A | MGRN1 | psi-mi:“MI:0914”(association) | 0.350 |
| CELA3A | IGF1R | psi-mi:“MI:0914”(association) | 0.350 |
| CLGN | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| HAPLN3 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| PRG3 | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (27): KREMEN2 (Synthetic Lethality), KREMEN2 (Affinity Capture-RNA), KREMEN2 (Proximity Label-MS), S (Reconstituted Complex), KREMEN2 (Affinity Capture-MS), KREMEN2 (Affinity Capture-MS), KREMEN2 (Affinity Capture-MS), KREMEN2 (Affinity Capture-MS), KREMEN2 (Affinity Capture-MS), KREMEN2 (Affinity Capture-MS), KREMEN2 (Affinity Capture-MS), KREMEN2 (Affinity Capture-MS), KREMEN2 (Affinity Capture-MS), KREMEN2 (Affinity Capture-MS), KREMEN2 (Affinity Capture-MS)
ESM2 similar proteins: A0A140LHF2, A0EQL2, D3YZF7, D7PDD4, O15533, O55237, O70394, O70540, O95866, P04278, P05111, P07994, P08689, P0C6B3, P0DP72, P15196, P17490, P18627, P40238, P55101, P60882, P97497, Q00657, Q08351, Q14393, Q14773, Q16671, Q3SWY4, Q5BK54, Q5NKT8, Q5TJE4, Q61790, Q61826, Q62588, Q6PZD2, Q6UVK1, Q6UWB1, Q7Z7M0, Q7Z7M1, Q86VR7
Diamond homologs: A2YPX3, D4AUF4, P84675, Q0D3N0, Q505J3, Q5QQ53, Q658N2, Q7KVA1, Q80XH4, Q8GY91, Q8K1S7, Q8NCW0, Q924S4, Q96MU8, Q99N43, Q9FLC0, A2BGL3, D4PHA7, P54867, Q0IIY2, Q16WU7, Q29G54, Q2TBF2, Q7Q297, Q965Q8, Q9VXV9, A8Q2D1, B3EX01, B8JI71, B8VIV4, C6KFA3, D3ZTE0, D5FM38, F1RWC3, O08628, O08859, O14786, O35276, O35375, O57382
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| DKK1 | up-regulates | KREMEN2 | binding |
| KREMEN2 | down-regulates | LRP6 | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
75 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 65 |
| Likely benign | 4 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1523 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:2966135:CGCA:C | acceptor_loss | 1.0000 |
| 16:2966136:GCA:G | acceptor_loss | 1.0000 |
| 16:2966137:CA:C | acceptor_loss | 1.0000 |
| 16:2966138:A:AG | acceptor_gain | 1.0000 |
| 16:2966139:G:A | acceptor_loss | 1.0000 |
| 16:2966139:G:GC | acceptor_gain | 1.0000 |
| 16:2966139:GT:G | acceptor_gain | 1.0000 |
| 16:2966139:GTA:G | acceptor_gain | 1.0000 |
| 16:2966139:GTAA:G | acceptor_gain | 1.0000 |
| 16:2966230:CA:C | donor_gain | 1.0000 |
| 16:2966232:G:GG | donor_gain | 1.0000 |
| 16:2966232:GTGA:G | donor_loss | 1.0000 |
| 16:2966233:TGA:T | donor_loss | 1.0000 |
| 16:2966234:GAG:G | donor_loss | 1.0000 |
| 16:2966235:AGTAG:A | donor_loss | 1.0000 |
| 16:2966794:AGGTG:A | donor_loss | 1.0000 |
| 16:2966908:A:AG | acceptor_gain | 1.0000 |
| 16:2966909:G:GG | acceptor_gain | 1.0000 |
| 16:2966909:GT:G | acceptor_gain | 1.0000 |
| 16:2966967:C:CA | acceptor_gain | 1.0000 |
| 16:2967240:GCG:G | donor_gain | 1.0000 |
| 16:2964611:CCAGG:C | donor_loss | 0.9900 |
| 16:2964614:GGT:G | donor_loss | 0.9900 |
| 16:2965030:GCCG:G | donor_gain | 0.9900 |
| 16:2965031:CCGGT:C | donor_loss | 0.9900 |
| 16:2965032:CGGT:C | donor_loss | 0.9900 |
| 16:2965033:GGTG:G | donor_loss | 0.9900 |
| 16:2965034:G:C | donor_loss | 0.9900 |
| 16:2965035:T:A | donor_loss | 0.9900 |
| 16:2966135:C:A | acceptor_gain | 0.9900 |
AlphaMissense
2933 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:2964953:G:C | W63C | 1.000 |
| 16:2964953:G:T | W63C | 1.000 |
| 16:2966167:G:C | W99C | 1.000 |
| 16:2966167:G:T | W99C | 1.000 |
| 16:2965029:T:A | C89S | 0.999 |
| 16:2965030:G:C | C89S | 0.999 |
| 16:2966168:T:A | C100S | 0.999 |
| 16:2966169:G:C | C100S | 0.999 |
| 16:2966170:C:G | C100W | 0.999 |
| 16:2966203:G:C | W111C | 0.999 |
| 16:2966203:G:T | W111C | 0.999 |
| 16:2966210:T:A | C114S | 0.999 |
| 16:2966211:G:A | C114Y | 0.999 |
| 16:2966211:G:C | C114S | 0.999 |
| 16:2966212:C:G | C114W | 0.999 |
| 16:2966417:T:C | C152R | 0.999 |
| 16:2966419:C:G | C152W | 0.999 |
| 16:2966429:T:C | C156R | 0.999 |
| 16:2966430:G:A | C156Y | 0.999 |
| 16:2966431:C:G | C156W | 0.999 |
| 16:2966673:T:G | F173C | 0.999 |
| 16:2967010:G:C | W247C | 0.999 |
| 16:2967010:G:T | W247C | 0.999 |
| 16:2965029:T:C | C89R | 0.998 |
| 16:2965030:G:A | C89Y | 0.998 |
| 16:2965031:C:G | C89W | 0.998 |
| 16:2966143:C:A | N91K | 0.998 |
| 16:2966143:C:G | N91K | 0.998 |
| 16:2966165:T:A | W99R | 0.998 |
| 16:2966165:T:C | W99R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000264883 (16:2964731 C>A), RS1000291600 (16:2964296 G>A), RS1000556724 (16:2968820 ACGCCTTCAGAGGCCTGGGTACCGTGGAG>A), RS1000870267 (16:2965983 C>T), RS1001247656 (16:2964818 C>A,T), RS1001679274 (16:2965025 C>T), RS1002032829 (16:2965644 G>T), RS1002315913 (16:2965336 G>A), RS1002869610 (16:2968425 C>T), RS1002931613 (16:2963207 G>C,T), RS1003322962 (16:2965931 C>T), RS1003559589 (16:2968119 G>A,C,T), RS1003687218 (16:2967592 C>T), RS1004056627 (16:2962951 G>A), RS1004236179 (16:2967612 G>A)
Disease associations
OMIM: gene MIM:609899 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): ependymoma (MONDO:0016698)
Orphanet (1): Ependymoma (Orphanet:251636)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D004806 | Ependymoma | C04.557.465.625.600.380.290; C04.557.470.670.380.290; C04.557.580.625.600.380.290 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
29 total (human), top 29 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases expression, increases methylation | 3 |
| Estradiol | increases expression, affects cotreatment, decreases expression | 2 |
| Aflatoxin B1 | increases expression | 2 |
| propionaldehyde | increases expression | 1 |
| trichostatin A | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| pentanal | increases expression | 1 |
| nutlin 3 | increases expression, affects cotreatment | 1 |
| abrine | increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Aldehydes | increases expression | 1 |
| Atrazine | increases expression | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Dactinomycin | affects cotreatment, increases expression | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Lipopolysaccharides | increases expression, affects response to substance | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Silicon Dioxide | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Triclosan | increases expression | 1 |
| Urethane | decreases expression | 1 |
| Okadaic Acid | increases expression | 1 |
| Copper Sulfate | increases expression | 1 |
| Particulate Matter | decreases expression, increases abundance | 1 |
Clinical trials (associated diseases)
95 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00517959 | PHASE3 | UNKNOWN | SCRT Versus Conventional RT in Children and Young Adults With Low Grade and Benign Brain Tumors |
| NCT01096368 | PHASE3 | COMPLETED | Maintenance Chemotherapy or Observation Following Induction Chemotherapy and Radiation Therapy in Treating Patients With Newly Diagnosed Ependymoma |
| NCT00003479 | PHASE2 | TERMINATED | Antineoplaston Therapy in Treating Patients With Ependymoma |
| NCT00520936 | PHASE2 | COMPLETED | A Study of Pemetrexed in Children With Recurrent Cancer |
| NCT00840047 | PHASE2 | ACTIVE_NOT_RECRUITING | Methionine PET/CT Studies In Patients With Cancer |
| NCT01088035 | PHASE2 | TERMINATED | Carboplatin as a Radiosensitizer in Treating Childhood Ependymoma |
| NCT01247922 | PHASE2 | TERMINATED | Single-agent Erlotinib in Patients Previously Treated With Oral Etoposide in Protocol OSI-774-205 |
| NCT01288235 | PHASE2 | COMPLETED | Proton Radiotherapy for Pediatric Brain Tumors Requiring Partial Brain Irradiation |
| NCT01295944 | PHASE2 | COMPLETED | Carboplatin and Bevacizumab for Recurrent Ependymoma |
| NCT01356290 | PHASE2 | RECRUITING | Antiangiogenic Therapy for Children With Recurrent Medulloblastoma, Ependymoma, ATRT and Rare CNS Tumors |
| NCT01836549 | PHASE2 | TERMINATED | Imetelstat Sodium in Treating Younger Patients With Recurrent or Refractory Brain Tumors |
| NCT02125786 | PHASE2 | ACTIVE_NOT_RECRUITING | A Trial of Surgery and Fractionated Re-Irradiation for Recurrent Ependymoma |
| NCT02689336 | PHASE2 | WITHDRAWN | Erlotinib in Combination With Temozolomide in Treating Relapsed/Recurrent/Refractory Pediatric Solid Tumors |
| NCT03095248 | PHASE2 | TERMINATED | Trial of Selumetinib in Patients With Neurofibromatosis Type II Related Tumors |
| NCT03155620 | PHASE2 | ACTIVE_NOT_RECRUITING | Targeted Therapy Directed by Genetic Testing in Treating Pediatric Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphomas, or Histiocytic Disorders (The Pediatric MATCH Screening Trial) |
| NCT03173950 | PHASE2 | COMPLETED | Immune Checkpoint Inhibitor Nivolumab in People With Recurrent Select Rare CNS Cancers |
| NCT03194906 | PHASE2 | COMPLETED | Memantine for Prevention of Cognitive Late Effects in Pediatric Patients Receiving Cranial Radiation Therapy for Localized Brain Tumors |
| NCT03210714 | PHASE2 | ACTIVE_NOT_RECRUITING | Erdafitinib in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With FGFR Mutations (A Pediatric MATCH Treatment Trial) |
| NCT03213652 | PHASE2 | ACTIVE_NOT_RECRUITING | Ensartinib in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With ALK or ROS1 Genomic Alterations (A Pediatric MATCH Treatment Trial) |
| NCT03213665 | PHASE2 | COMPLETED | Tazemetostat in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With EZH2, SMARCB1, or SMARCA4 Gene Mutations (A Pediatric MATCH Treatment Trial) |
| NCT03213678 | PHASE2 | COMPLETED | Samotolisib in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With TSC or PI3K/MTOR Mutations (A Pediatric MATCH Treatment Trial) |
| NCT03213704 | PHASE2 | ACTIVE_NOT_RECRUITING | Larotrectinib in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With NTRK Fusions (A Pediatric MATCH Treatment Trial) |
| NCT03220035 | PHASE2 | COMPLETED | Vemurafenib in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With BRAF V600 Mutations (A Pediatric MATCH Treatment Trial) |
| NCT03233204 | PHASE2 | COMPLETED | Olaparib in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With Defects in DNA Damage Repair Genes (A Pediatric MATCH Treatment Trial) |
| NCT03526250 | PHASE2 | COMPLETED | Palbociclib in Treating Patients With Relapsed or Refractory Rb Positive Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With Activating Alterations in Cell Cycle Genes (A Pediatric MATCH Treatment Trial) |
| NCT03698994 | PHASE2 | ACTIVE_NOT_RECRUITING | Ulixertinib in Treating Patients With Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With MAPK Pathway Mutations (A Pediatric MATCH Treatment Trial) |
| NCT03727841 | PHASE2 | TERMINATED | Marizomib for Recurrent Low-Grade and Anaplastic Supratentorial, Infratentorial, and Spinal Cord Ependymoma |
| NCT04049669 | PHASE2 | ACTIVE_NOT_RECRUITING | Pediatric Trial of Indoximod With Chemotherapy and Radiation for Relapsed Brain Tumors or Newly Diagnosed DIPG |
| NCT04195555 | PHASE2 | ACTIVE_NOT_RECRUITING | Ivosidenib in Treating Patients With Advanced Solid Tumors, Lymphoma, or Histiocytic Disorders With IDH1 Mutations (A Pediatric MATCH Treatment Trial) |
| NCT04284774 | PHASE2 | ACTIVE_NOT_RECRUITING | Tipifarnib for the Treatment of Advanced Solid Tumors, Lymphoma, or Histiocytic Disorders With HRAS Gene Alterations, a Pediatric MATCH Treatment Trial |
| NCT04320888 | PHASE2 | ACTIVE_NOT_RECRUITING | Selpercatinib for the Treatment of Advanced Solid Tumors, Lymphomas, or Histiocytic Disorders With Activating RET Gene Alterations, a Pediatric MATCH Treatment Trial |
| NCT04374305 | PHASE2 | RECRUITING | Innovative Trial for Understanding the Impact of Targeted Therapies in NF2-Related Schwannomatosis (INTUITT-NF2) |
| NCT04743661 | PHASE2 | ACTIVE_NOT_RECRUITING | 131I-Omburtamab, in Recurrent Medulloblastoma and Ependymoma |
| NCT06804655 | PHASE2 | NOT_YET_RECRUITING | Pharmacoscopy for Patients With Refractory Primary Brain Tumors |
| NCT07424092 | PHASE2 | RECRUITING | Intratumoral DNX-2401 for High Grade Pediatric Brain Tumors |
| NCT00634231 | PHASE1 | COMPLETED | A Phase I Study of AdV-tk + Prodrug Therapy in Combination With Radiation Therapy for Pediatric Brain Tumors |
| NCT00994071 | PHASE1 | COMPLETED | A Phase I Study of ABT-888, an Oral Inhibitor of Poly(ADP-ribose) Polymerase and Temozolomide in Children With Recurrent/Refractory CNS Tumors |
| NCT01171469 | PHASE1 | COMPLETED | Vaccination With Dendritic Cells Loaded With Brain Tumor Stem Cells for Progressive Malignant Brain Tumor |
| NCT01331135 | PHASE1 | COMPLETED | Aflac ST0901 CHOANOME - Sirolimus in Solid Tumors |
| NCT01498783 | PHASE1 | COMPLETED | Phase I Study of 5-Fluorouracil in Children and Young Adults With Recurrent Ependymoma |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): ependymoma