KRT5
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Also known as KRT5ACK-5
Summary
KRT5 (keratin 5, HGNC:6442) is a protein-coding gene on chromosome 12q13.13, encoding Keratin, type II cytoskeletal 5 (P13647). Required for the formation of keratin intermediate filaments in the basal epidermis and maintenance of the skin barrier in response to mechanical stress.
The protein encoded by this gene is a member of the keratin gene family. The type II cytokeratins consist of basic or neutral proteins which are arranged in pairs of heterotypic keratin chains coexpressed during differentiation of simple and stratified epithelial tissues. This type II cytokeratin is specifically expressed in the basal layer of the epidermis with family member KRT14. Mutations in these genes have been associated with a complex of diseases termed epidermolysis bullosa simplex. The type II cytokeratins are clustered in a region of chromosome 12q12-q13.
Source: NCBI Gene 3852 — RefSeq curated summary.
At a glance
- Gene–disease (curated): epidermolysis bullosa simplex 1A, generalized severe (Definitive, GenCC) — +9 more curated relationships
- GWAS associations: 10
- Clinical variants (ClinVar): 392 total — 58 pathogenic, 27 likely-pathogenic
- Phenotypes (HPO): 121
- MANE Select transcript:
NM_000424
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6442 |
| Approved symbol | KRT5 |
| Name | keratin 5 |
| Location | 12q13.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KRT5A, CK-5 |
| Ensembl gene | ENSG00000186081 |
| Ensembl biotype | protein_coding |
| OMIM | 148040 |
| Entrez | 3852 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 6 protein_coding, 5 retained_intron
ENST00000252242, ENST00000546577, ENST00000547890, ENST00000548409, ENST00000549420, ENST00000549511, ENST00000551013, ENST00000551188, ENST00000551275, ENST00000552629, ENST00000552952
RefSeq mRNA: 1 — MANE Select: NM_000424
NM_000424
CCDS: CCDS8830
Canonical transcript exons
ENST00000252242 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001060878 | 52514575 | 52515240 |
| ENSE00002408701 | 52519742 | 52520394 |
| ENSE00003514770 | 52517590 | 52517754 |
| ENSE00003532733 | 52515798 | 52515832 |
| ENSE00003566328 | 52518103 | 52518163 |
| ENSE00003582821 | 52518946 | 52519160 |
| ENSE00003590565 | 52517107 | 52517232 |
| ENSE00003605077 | 52517897 | 52517992 |
| ENSE00003615991 | 52516637 | 52516857 |
Expression profiles
Bgee: expression breadth ubiquitous, 211 present calls, max score 99.91.
FANTOM5 (CAGE): breadth broad, TPM avg 313.8082 / max 27697.1546, expressed in 272 samples.
FANTOM5 promoters (12 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 131094 | 311.2060 | 255 |
| 131086 | 0.3936 | 84 |
| 131088 | 0.3911 | 86 |
| 131084 | 0.3700 | 83 |
| 131085 | 0.3623 | 80 |
| 131093 | 0.3453 | 84 |
| 131089 | 0.3027 | 77 |
| 131092 | 0.2181 | 73 |
| 131087 | 0.0980 | 48 |
| 206717 | 0.0589 | 36 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus mucosa | UBERON:0035834 | 99.91 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 99.89 | gold quality |
| gingiva | UBERON:0001828 | 99.89 | gold quality |
| gingival epithelium | UBERON:0001949 | 99.88 | gold quality |
| nipple | UBERON:0002030 | 99.87 | gold quality |
| skin of abdomen | UBERON:0001416 | 99.83 | gold quality |
| upper arm skin | UBERON:0004263 | 99.81 | gold quality |
| upper leg skin | UBERON:0004262 | 99.80 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 99.78 | gold quality |
| mammalian vulva | UBERON:0000997 | 99.76 | gold quality |
| penis | UBERON:0000989 | 99.73 | gold quality |
| zone of skin | UBERON:0000014 | 99.72 | gold quality |
| skin of hip | UBERON:0001554 | 99.72 | gold quality |
| hair follicle | UBERON:0002073 | 99.70 | gold quality |
| skin of leg | UBERON:0001511 | 99.65 | gold quality |
| body of tongue | UBERON:0011876 | 99.65 | gold quality |
| oral cavity | UBERON:0000167 | 99.59 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 99.52 | gold quality |
| esophagus mucosa | UBERON:0002469 | 99.49 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 99.45 | gold quality |
| tongue | UBERON:0001723 | 99.42 | gold quality |
| squamous epithelium | UBERON:0006914 | 99.34 | gold quality |
| trachea | UBERON:0003126 | 99.22 | gold quality |
| cervix epithelium | UBERON:0004801 | 99.08 | gold quality |
| superior surface of tongue | UBERON:0007371 | 98.99 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 98.96 | gold quality |
| mouth mucosa | UBERON:0003729 | 98.84 | gold quality |
| periodontal ligament | UBERON:0008266 | 98.84 | gold quality |
| tonsil | UBERON:0002372 | 98.77 | gold quality |
| minor salivary gland | UBERON:0001830 | 98.68 | gold quality |
Single-cell (SCXA)
Detected in 12 experiment(s), a significant marker in 11.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8142 | yes | 14545.34 |
| E-HCAD-1 | yes | 6752.43 |
| E-MTAB-10855 | yes | 4725.68 |
| E-CURD-114 | yes | 3938.81 |
| E-MTAB-9841 | yes | 2192.66 |
| E-MTAB-10885 | yes | 1844.72 |
| E-CURD-79 | yes | 895.79 |
| E-HCAD-38 | yes | 858.05 |
| E-HCAD-15 | yes | 804.43 |
| E-ANND-5 | yes | 583.68 |
| E-MTAB-10596 | no | 9040.46 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AP1, BRCA1, CTNNB1, DLX4, EGR1, ELF1, ESR1, GRHL3, NR4A3, PAX1, PRL, RARG, SMAD7, SP1, TFAP2A, TP63
miRNA regulators (miRDB)
44 targeting KRT5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-LET-7D-5P | 99.96 | 71.76 | 1632 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-9902 | 99.89 | 69.15 | 2250 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-4760-5P | 99.80 | 69.88 | 1619 |
| HSA-MIR-2052 | 99.79 | 69.37 | 2031 |
| HSA-MIR-4668-5P | 99.79 | 70.58 | 3782 |
| HSA-MIR-3913-5P | 99.78 | 67.26 | 968 |
| HSA-MIR-4422 | 99.72 | 72.07 | 2908 |
| HSA-MIR-8061 | 99.63 | 69.44 | 1411 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
| HSA-MIR-516B-5P | 99.56 | 66.33 | 1495 |
| HSA-MIR-3122 | 99.50 | 66.33 | 821 |
| HSA-MIR-4498 | 99.47 | 67.42 | 2360 |
| HSA-MIR-766-3P | 99.47 | 65.24 | 1811 |
| HSA-MIR-6513-5P | 99.43 | 67.81 | 1071 |
| HSA-MIR-4505 | 99.27 | 67.81 | 2678 |
Literature-anchored findings (GeneRIF, showing 40)
- stutter mutation plays an important role in the organization of the keratin intermediate filament network (PMID:11973334)
- expression in breast cancer cells was associated with a poor clinical outcome (PMID:12466114)
- Four novel KRT5 mutations identified two of which were outside of the KRT5 hotspot domains in 9 Epidermolysis bullosa simplex patients. (PMID:12655565)
- a useful adjunct marker in distinguishing cutaneous adnexal neoplasms from metastatic lesions (PMID:15618924)
- a mutation in the nonhelical tail domain in type II keratin 5 may have a role in cell fragility in epidermolysis bullosa simplex (PMID:15647384)
- many cases result from de novo mutations in KRT5 and KRT14 genes in epidermolysis bullosa simplex (PMID:16098032)
- loss of p63 or CK5/6 was associated with features of aggressive tumors, and lack of CK5/6 was significantly associated with reduced survival in multivariate analysis (PMID:16152605)
- Loss-of-function mutations in the keratin 5 gene (KRT5) in all affected family members and in six unrelated patients with Dowling-Degos disease were identified. (PMID:16465624)
- Novel mutations within KRT5 are associated with epidermolysis bullosa simplex. (PMID:16786515)
- analysis of keratin 5 and keratin 14 mutations in epidermolysis bullosa simplex in Scottish patients (PMID:17039244)
- Missence mutation is a causse of epidermolysis bullosa simplex in a 3-year old boy. (PMID:17229601)
- A novel autosomal partially dominant mutation designated G476D in the KRT5 gene causes epidermyolysis bullosa simplex Weber-Cockayne type. (PMID:17549391)
- CK5/6 and/or EGFR expressing tumor types have a persistently poorer prognosis over the longer term. (PMID:17650314)
- reports 2 novel mutations in keratin 5 in patients with epidermolysis bullosa complex with an unusual genotype-phenotype correlation (PMID:17855059)
- Existence of Ck5-positive cells that differentiate to the glandular or myoepithelial breast cell lineage via intermediary cells. (PMID:18035671)
- Cytokeratin markers (CK5/6 and K903) are useful in differentiating squamous cell carcinoma from adenocarcinoma when malignant mesothelioma is already excluded (PMID:18064689)
- 17% of invasive lobular carcinomas express CK5/6, and that CK5/6[+] cases are more likely to be ER[-] and have a high modified Scarff-Bloom-Richardson histologic grade (PMID:18261623)
- Cytokeratin 5/6 can be a useful adjunct in cases with ductal hyperplasia but not in columnar cell lesions, on breast core biopsies (PMID:18499686)
- senescence of primary NHP cells expressing progenitor cell markers CD44, alpha2beta1, p63, hTERT, and CK5/CK18, involves loss of telomerase expression, up-regulation of p16, and activation of p53. (PMID:18662989)
- The high reactivity rate in pulmonary adenocarcinomas disagrees with the results obtained with histologic sections from solid tumor tissue, and CK5/6 seems to be of very limited value as an additional marker in effusion cytology. (PMID:18833821)
- Positive expression of CK5/6 or CK17 in patients with triple-negative breast cancer is correlated with poor prognosis, high grade differentiation and axillary lymph node metastasis. (PMID:19102940)
- CK5/6 is a determinant of basaloid breast cancer. Association between CK5/6 positivity and lymph node involvement was statistically significant. (PMID:19156550)
- A novel mutation (p.Thr198Ser) in the 1A helix of keratin 5 causes the localized variant of epidermolysis bullosa simplex. (PMID:19220453)
- Cytokines involved in the recruitment, maturation, and migration of Langerhans cells in the epidermis, are upregulated in the skin of K5(-/-) and epidermolysis bullosa simplex patients. (PMID:19267394)
- Recognition of adenosquamous carcinoma is important for appropriate therapy, and stains for p63 and cytokeratin 5/6 may be helpful in ruling out metastatic adenocarcinoma. (PMID:19278431)
- Positive staining for CK5/6 or CK17 was associated with a worse prognosis, high tumor grade and positive axillary lymph nodes. (PMID:19366057)
- the percentage of lung carcinoma patients remaining unclassifiable by TTF-1/TP63 was twice that of the five-antibody (TRIM29, CEACAM5, SLC7A5, MUC1, and CK5/6) test (PMID:19430419)
- DeltaNp63 alone can restore the expression of the basal keratins and reinitiate the failed epidermal differentiation program in the skin of p63 null animals. (PMID:19461998)
- cytokeratin 5 may have a role in preventing progression of disease after lung transplantation (PMID:19529775)
- All prostate cancer specimens lacked CK5/6 staining (PMID:19605815)
- Mutations characteristic of Dowling-Meara epidermolysis bullosa induce down-regulation of junction proteins in keratinocytes. (PMID:19616543)
- The filament self-organization is mediated by multivalent interactions involving distinct regions in K5 protein. (PMID:19651890)
- Patterns and extent of ER and CK5 staining, when used together, are valuable adjunct stains to differentiate usual duct hyperplasia from atypical proliferations within papillary lesions on breast core biopsy. (PMID:19675450)
- E478K mutation in exon 5 in Dowling-Meara type epidermolysis bullosa (PMID:19691749)
- Studies show that the intrinsic molecular signature of five markers, ER, PR, HER-2, CK 5/6, and EGFR, demonstrated specificity of 100% and sensitivity of 75%, compared with classification by gene expression profiling. (PMID:19720911)
- novel heterozygous pathogenic missense mutation (KRT5:c.596A>T, p.Lys199Met (PMID:19797037)
- keratin mutant cells also show a resistance to apoptosis following mechanical stress that is reversed by inhibiting ERK (PMID:19847192)
- Overexpression of KRT5 is associated with basal-like phenotype in breast cancer. (PMID:19882246)
- this study demonstrates a strict genotype-phenotype correlation in vivo and in primary cultures of keratinocytes from patients with epidermolysis bullosa simplex with KRT5 mutations. (PMID:20030639)
- One novel missense mutation was identified in a patient with sporadic epidermolysis bullosa simplex (PMID:20055872)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Krt5 | ENSMUSG00000061527 |
| mus_musculus | Gm5478 | ENSMUSG00000095241 |
| rattus_norvegicus | Krt5 | ENSRNOG00000050420 |
Paralogs (68): KRT33A (ENSG00000006059), VIM (ENSG00000026025), KRT31 (ENSG00000094796), NEFM (ENSG00000104722), KRT23 (ENSG00000108244), KRT37 (ENSG00000108417), KRT32 (ENSG00000108759), KRT18 (ENSG00000111057), LMNB1 (ENSG00000113368), KRT36 (ENSG00000126337), KRT17 (ENSG00000128422), GFAP (ENSG00000131095), KRT34 (ENSG00000131737), KRT33B (ENSG00000131738), NES (ENSG00000132688), PRPH (ENSG00000135406), KRT85 (ENSG00000135443), KRT7 (ENSG00000135480), KRT71 (ENSG00000139648), INA (ENSG00000148798), LMNTD1 (ENSG00000152936), LMNA (ENSG00000160789), KRT84 (ENSG00000161849), KRT82 (ENSG00000161850), KRT80 (ENSG00000167767), KRT1 (ENSG00000167768), KRT24 (ENSG00000167916), KRT8 (ENSG00000170421), KRT78 (ENSG00000170423), KRT86 (ENSG00000170442), KRT75 (ENSG00000170454), KRT6C (ENSG00000170465), KRT4 (ENSG00000170477), KRT74 (ENSG00000170484), KRT72 (ENSG00000170486), KRT83 (ENSG00000170523), BFSP2 (ENSG00000170819), KRT19 (ENSG00000171345), KRT15 (ENSG00000171346), KRT38 (ENSG00000171360)
Protein
Protein identifiers
Keratin, type II cytoskeletal 5 — P13647 (reviewed: P13647)
Alternative names: 58 kDa cytokeratin, Cytokeratin-5, Keratin-5, Type-II keratin Kb5
All UniProt accessions (6): P13647, F8VU69, F8VV57, F8W0C6, H0YI76, H0YIN9
UniProt curated annotations — full annotation on UniProt →
Function. Required for the formation of keratin intermediate filaments in the basal epidermis and maintenance of the skin barrier in response to mechanical stress. Regulates the recruitment of Langerhans cells to the epidermis, potentially by modulation of the abundance of macrophage chemotactic cytokines, macrophage inflammatory cytokines and CTNND1 localization in keratinocytes.
Subunit / interactions. Heterodimer of a type I and a type II keratin. Heterodimer with type I keratin KRT25 leading to the formation of keratin intermediate filament (KIF) network. Forms a heterodimer (via 2B domains) with KRT14 (via 2B domains). Interacts with PLEC isoform 1C, when in a heterodimer with KRT14. Interacts with TCHP. Interacts with EPPK1. Interacts with AMELX. Interacts with PKP1 (via N-terminus) and PKP2.
Subcellular location. Cytoplasm.
Tissue specificity. Expressed in corneal epithelium (at protein level). Expressed in keratinocytes (at protein level).
Post-translational modifications. Phosphorylated by CDK1, AURKB and Rho-kinase, phosphorylation is regulated by the cell cycle. Thr-24 phosphorylation, mediated by CDK1, peaks during prometaphase or metaphase cells with phosphorylated filamentous structures evident throughout the cytoplasm during early mitosis. CDK1 phosphorylates Thr-24 in mitotic cells at the site of injury. O-glycosylated.
Disease relevance. Epidermolysis bullosa simplex 2A, generalized severe (EBS2A) [MIM:619555] A form of epidermolysis bullosa simplex, a group of skin fragility disorders characterized by skin blistering due to cleavage within the basal layer of keratinocytes, and erosions caused by minor mechanical trauma. There is a broad spectrum of clinical severity ranging from minor blistering on the feet, to subtypes with extracutaneous involvement and a lethal outcome. EBS2A is an autosomal dominant, severe form characterized by extensive intraepidermal blistering from the time of birth with herpetiform marginal spreading and central healing. Oral mucosal involvement, nail dystrophy, onychogryposis, formation of milia, and palmoplantar hyperkeratosis are common features. The disease is caused by variants affecting the gene represented in this entry. Epidermolysis bullosa simplex 2B, generalized intermediate (EBS2B) [MIM:619588] A form of epidermolysis bullosa simplex, a group of skin fragility disorders characterized by skin blistering due to cleavage within the basal layer of keratinocytes, and erosions caused by minor mechanical trauma. There is a broad spectrum of clinical severity ranging from minor blistering on the feet, to subtypes with extracutaneous involvement and a lethal outcome. EBS2B is an autosomal dominant form characterized by generalized blistering manifesting at birth. The tendency to blistering diminishes in adolescence, when it may become localized to hands and feet. The disease is caused by variants affecting the gene represented in this entry. Epidermolysis bullosa simplex 2C, localized (EBS2C) [MIM:619594] A form of epidermolysis bullosa simplex, a group of skin fragility disorders characterized by skin blistering due to cleavage within the basal layer of keratinocytes, and erosions caused by minor mechanical trauma. There is a broad spectrum of clinical severity ranging from minor blistering on the feet, to subtypes with extracutaneous involvement and a lethal outcome. EBS2C is an autosomal dominant form with intraepidermal blistering mainly restricted to hands and feet beginning in infancy. Nails may be thick and dystrophic. The disease is caused by variants affecting the gene represented in this entry. Epidermolysis bullosa simplex 2D, generalized, intermediate or severe, autosomal recessive (EBS2D) [MIM:619599] A form of epidermolysis bullosa simplex, a group of skin fragility disorders characterized by skin blistering due to cleavage within the basal layer of keratinocytes, and erosions caused by minor mechanical trauma. There is a broad spectrum of clinical severity ranging from minor blistering on the feet, to subtypes with extracutaneous involvement and a lethal outcome. EBS2D is an autosomal recessive form characterized by widespread intraepidermal skin blistering and erosions from birth. Death may occur in the neonatal period. The disease is caused by variants affecting the gene represented in this entry. Epidermolysis bullosa simplex 2E, with migratory circinate erythema (EBS2E) [MIM:609352] A form of epidermolysis bullosa simplex, a group of skin fragility disorders characterized by skin blistering due to cleavage within the basal layer of keratinocytes, and erosions caused by minor mechanical trauma. There is a broad spectrum of clinical severity ranging from minor blistering on the feet, to subtypes with extracutaneous involvement and a lethal outcome. EBS2E is an autosomal dominant form in which multiple vesicles are present from birth onward and acquire over time a typical migratory circinate pattern on an erythematous background. Postinflammatory hyperpigmentation develops gradually and may have a mottled pattern. The disease is caused by variants affecting the gene represented in this entry. Epidermolysis bullosa simplex 2F, with mottled pigmentation (EBS2F) [MIM:131960] A form of epidermolysis bullosa simplex, a group of skin fragility disorders characterized by skin blistering due to cleavage within the basal layer of keratinocytes, and erosions caused by minor mechanical trauma. There is a broad spectrum of clinical severity ranging from minor blistering on the feet, to subtypes with extracutaneous involvement and a lethal outcome. EBS2F is an autosomal dominant form characterized by generalized skin blistering of intermediate severity beginning at birth, with mottled or reticulate pigmentation developing gradually. Focal keratoses of palms and soles and dystrophic, thickened nails develop over time. The disease is caused by variants affecting the gene represented in this entry. Dowling-Degos disease 1 (DDD1) [MIM:179850] An autosomal dominant genodermatosis. Affected individuals develop a postpubertal reticulate hyperpigmentation that is progressive and disfiguring, and small hyperkeratotic dark brown papules that affect mainly the flexures and great skin folds. Patients usually show no abnormalities of the hair or nails. The disease is caused by variants affecting the gene represented in this entry.
Miscellaneous. There are two types of cytoskeletal and microfibrillar keratin: I (acidic; 40-55 kDa) and II (neutral to basic; 56-70 kDa).
Similarity. Belongs to the intermediate filament family.
RefSeq proteins (1): NP_000415* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003054 | Keratin_II | Family |
| IPR018039 | IF_conserved | Conserved_site |
| IPR032444 | Keratin_2_head | Domain |
| IPR039008 | IF_rod_dom | Domain |
Pfam: PF00038, PF16208
UniProt features (127 total): sequence variant 87, modified residue 13, region of interest 9, mutagenesis site 7, sequence conflict 5, compositionally biased region 2, chain 1, domain 1, helix 1, site 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6JFV | X-RAY DIFFRACTION | 2.6 |
| 3TNU | X-RAY DIFFRACTION | 3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P13647-F1 | 68.86 | 0.44 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 419 (stutter)
Post-translational modifications (13): 5, 8, 16, 21, 24, 26, 36, 50, 64, 71, 75, 82, 151
Mutagenesis-validated functional residues (7):
| Position | Phenotype |
|---|---|
| 399 | increase in keratin-positive aggregates and keratin intermediate filament networks that are very thin and sparse with sh |
| 411 | no effect on interaction with krt14 or keratin intermediate filament networks. |
| 412 | no effect on interaction with krt14 or keratin intermediate filament networks. |
| 422 | no effect on interaction with krt14 or keratin intermediate filament networks. |
| 437 | no effect on interaction with krt14 or keratin intermediate filament networks. |
| 440 | no effect on interaction with krt14 or keratin intermediate filament networks. |
| 444 | no effect on interaction with krt14 or keratin intermediate filament networks. |
Function
Pathways and Gene Ontology
Reactome pathways
11 pathways
| ID | Pathway |
|---|---|
| R-HSA-446107 | Type I hemidesmosome assembly |
| R-HSA-6805567 | Keratinization |
| R-HSA-6809371 | Formation of the cornified envelope |
| R-HSA-9725554 | Differentiation of Keratinocytes in Interfollicular Epidermis in Mammalian Skin |
| R-HSA-9927418 | Developmental Lineage of Mammary Gland Luminal Epithelial Cells |
| R-HSA-9927432 | Developmental Lineage of Mammary Gland Myoepithelial Cells |
| R-HSA-9938206 | Developmental Lineage of Mammary Stem Cells |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-1500931 | Cell-Cell communication |
| R-HSA-446728 | Cell junction organization |
| R-HSA-9734767 | Developmental Cell Lineages |
MSigDB gene sets: 386 (showing top):
GSE45365_NK_CELL_VS_CD8_TCELL_DN, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_INTERMEDIATE_FILAMENT_BASED_PROCESS, MACLACHLAN_BRCA1_TARGETS_DN, GOBP_INTERMEDIATE_FILAMENT_ORGANIZATION, JAEGER_METASTASIS_DN, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, PID_REG_GR_PATHWAY, CHANDRAN_METASTASIS_DN, BROWNE_HCMV_INFECTION_48HR_DN, GOBP_EPIDERMAL_CELL_DIFFERENTIATION, WANG_ESOPHAGUS_CANCER_VS_NORMAL_DN, RICKMAN_METASTASIS_DN
GO Biological Process (7): epidermis development (GO:0008544), response to mechanical stimulus (GO:0009612), regulation of cell migration (GO:0030334), keratinization (GO:0031424), regulation of protein localization (GO:0032880), intermediate filament polymerization (GO:0045107), intermediate filament organization (GO:0045109)
GO Molecular Function (4): structural constituent of cytoskeleton (GO:0005200), structural constituent of skin epidermis (GO:0030280), scaffold protein binding (GO:0097110), protein binding (GO:0005515)
GO Cellular Component (7): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), intermediate filament (GO:0005882), membrane (GO:0016020), keratin filament (GO:0045095), extracellular exosome (GO:0070062)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| Developmental Lineages of the Mammary Gland | 3 |
| Developmental Biology | 2 |
| Cell junction organization | 1 |
| Keratinization | 1 |
| Developmental Cell Lineages of the Integumentary System | 1 |
| Cell-Cell communication | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| structural molecule activity | 2 |
| tissue development | 1 |
| response to external stimulus | 1 |
| response to abiotic stimulus | 1 |
| cell migration | 1 |
| regulation of cell motility | 1 |
| keratinocyte differentiation | 1 |
| multicellular organismal process | 1 |
| intracellular protein localization | 1 |
| regulation of localization | 1 |
| intermediate filament polymerization or depolymerization | 1 |
| protein polymerization | 1 |
| intermediate filament cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| cytoskeleton | 1 |
| cytoskeleton organization | 1 |
| protein binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| intermediate filament cytoskeleton | 1 |
| polymeric cytoskeletal fiber | 1 |
| intermediate filament | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
3038 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| KRT5 | KRT14 | P02533 | 986 |
| KRT5 | EGFR | P00533 | 842 |
| KRT5 | LIAT1 | Q6ZQX7 | 824 |
| KRT5 | NAPSA | O96009 | 793 |
| KRT5 | ERBB2 | P04626 | 791 |
| KRT5 | LORICRIN | P23490 | 787 |
| KRT5 | CALB2 | P22676 | 774 |
| KRT5 | PGR | P06401 | 773 |
| KRT5 | CEACAM5 | P06731 | 753 |
| KRT5 | PLEC | Q15149 | 748 |
| KRT5 | NKX2-1 | P43699 | 728 |
| KRT5 | AMACR | Q9UHK6 | 723 |
| KRT5 | ESR1 | P03372 | 720 |
| KRT5 | SCGB1A1 | P11684 | 715 |
| KRT5 | FLG | P20930 | 707 |
IntAct
139 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| KRT5 | KRT14 | psi-mi:“MI:0407”(direct interaction) | 0.760 |
| KRT5 | KRT14 | psi-mi:“MI:0915”(physical association) | 0.760 |
| KRT5 | KRT14 | psi-mi:“MI:0408”(disulfide bond) | 0.760 |
| KRT14 | KRT5 | psi-mi:“MI:0915”(physical association) | 0.760 |
| KRT5 | KRT38 | psi-mi:“MI:0915”(physical association) | 0.720 |
| KRT5 | KRT15 | psi-mi:“MI:0915”(physical association) | 0.720 |
| KRT31 | KRT5 | psi-mi:“MI:0915”(physical association) | 0.720 |
| KRT40 | KRT5 | psi-mi:“MI:0915”(physical association) | 0.720 |
| KRT38 | KRT5 | psi-mi:“MI:0915”(physical association) | 0.720 |
| KRT5 | KRT31 | psi-mi:“MI:0915”(physical association) | 0.720 |
| KRT5 | KRT40 | psi-mi:“MI:0915”(physical association) | 0.720 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| KRT5 | KIFC3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KIFC3 | KRT5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRT5 | KRT25 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (229): KRT5 (Affinity Capture-MS), KRT5 (Two-hybrid), KRT15 (Two-hybrid), KRT31 (Two-hybrid), KRT38 (Two-hybrid), KRT40 (Two-hybrid), KRT5 (Affinity Capture-MS), KRT5 (Affinity Capture-MS), KRT5 (Affinity Capture-MS), KRT5 (Affinity Capture-MS), KRT5 (Affinity Capture-MS), KRT5 (Affinity Capture-MS), KRT10 (Co-fractionation), KRT16 (Co-fractionation), KRT5 (Co-fractionation)
ESM2 similar proteins: A5A6M6, A5A6M8, O95678, P02535, P02537, P02538, P04104, P04259, P04264, P06394, P07744, P08776, P12035, P13645, P13647, P16878, P18520, P19013, P35527, P35908, P48668, P50446, Q01546, Q08D91, Q148H7, Q29426, Q2M2I5, Q3TTY5, Q3UV17, Q4FZU2, Q5XQN5, Q6EIY9, Q6EIZ0, Q6EIZ1, Q6IFW6, Q6IFZ6, Q6IG00, Q6IG01, Q6IG02, Q6IG05
Diamond homologs: A0A125S9M6, A0JND2, A4FUZ0, A5A6M8, A6NCN2, A7YWK3, O43790, P02542, P02545, P02547, P02548, P04104, P04260, P04261, P04262, P04263, P07196, P07744, P08551, P08928, P09010, P10999, P12035, P12036, P13647, P13648, P15241, P16884, P19013, P19246, P19527, P21619, P21910, P25691, P35908, P48671, P48672, P48678, P48679, P78385
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRL | “up-regulates quantity by expression” | KRT5 | “transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 101 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Differentiation of Keratinocytes in Interfollicular Epidermis in Mammalian Skin | 5 | 19.6× | 2e-04 |
| Formation of the cornified envelope | 14 | 17.3× | 2e-11 |
| Regulation of RAS by GAPs | 5 | 13.6× | 6e-04 |
| Keratinization | 14 | 11.0× | 6e-09 |
| Macroautophagy | 6 | 9.8× | 6e-04 |
| Cargo recognition for clathrin-mediated endocytosis | 5 | 7.4× | 4e-03 |
| Neddylation | 11 | 7.3× | 2e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| morphogenesis of an epithelium | 12 | 48.5× | 7e-15 |
| intermediate filament organization | 13 | 36.8× | 7e-15 |
| intrinsic apoptotic signaling pathway | 6 | 25.3× | 2e-05 |
| epithelial cell differentiation | 10 | 20.6× | 1e-08 |
| autophagosome maturation | 5 | 20.6× | 4e-04 |
| mitophagy | 5 | 18.7× | 5e-04 |
| autophagosome assembly | 6 | 15.9× | 3e-04 |
| G1/S transition of mitotic cell cycle | 5 | 11.8× | 4e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
392 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 58 |
| Likely pathogenic | 27 |
| Uncertain significance | 140 |
| Likely benign | 34 |
| Benign | 32 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1047955 | NM_000424.4(KRT5):c.556-16C>G | Pathogenic |
| 1047989 | NM_000424.4(KRT5):c.771delG | Pathogenic |
| 1047990 | NM_000424.4(KRT5):c.961A>C (p.Thr321Pro) | Pathogenic |
| 1194325 | NM_000424.4(KRT5):c.1438A>T (p.Arg480Ter) | Pathogenic |
| 1302022 | NM_000424.4(KRT5):c.472G>A (p.Asp158Asn) | Pathogenic |
| 1302023 | NM_000424.4(KRT5):c.1440-1G>A | Pathogenic |
| 1339348 | NM_000424.4(KRT5):c.1638_1641del (p.Ser547fs) | Pathogenic |
| 1339349 | NM_000424.4(KRT5):c.1321_1332del (p.Lys441_Gln444del) | Pathogenic |
| 1339350 | NM_000424.4(KRT5):c.1650del (p.Ser551fs) | Pathogenic |
| 14638 | NM_000424.4(KRT5):c.1424A>G (p.Glu475Gly) | Pathogenic |
| 14639 | NM_000424.4(KRT5):c.1388T>C (p.Leu463Pro) | Pathogenic |
| 14640 | NM_000424.4(KRT5):c.482T>G (p.Ile161Ser) | Pathogenic |
| 14641 | NM_000424.4(KRT5):c.980T>C (p.Met327Thr) | Pathogenic |
| 14642 | NM_000424.4(KRT5):c.987C>A (p.Asn329Lys) | Pathogenic |
| 14643 | NM_000424.4(KRT5):c.519G>C (p.Lys173Asn) | Pathogenic |
| 14644 | NM_000424.4(KRT5):c.579C>G (p.Asn193Lys) | Pathogenic |
| 14645 | NM_000424.4(KRT5):c.523C>T (p.Leu175Phe) | Pathogenic |
| 14646 | NM_000424.4(KRT5):c.20T>C (p.Val7Ala) | Pathogenic |
| 14647 | NM_000424.4(KRT5):c.14C>A (p.Ser5Ter) | Pathogenic |
| 14648 | NM_000424.4(KRT5):c.74C>T (p.Pro25Leu) | Pathogenic |
| 14650 | NM_000424.4(KRT5):c.541T>C (p.Ser181Pro) | Pathogenic |
| 14652 | NM_000424.4(KRT5):c.556G>T (p.Val186Leu) | Pathogenic |
| 14653 | NM_000424.4(KRT5):c.1429G>T (p.Glu477Ter) | Pathogenic |
| 14654 | NM_000424.4(KRT5):c.1414A>T (p.Lys472Ter) | Pathogenic |
| 14655 | NM_000424.4(KRT5):c.1649del (p.Gly550fs) | Pathogenic |
| 14657 | NM_000424.4(KRT5):c.508G>A (p.Glu170Lys) | Pathogenic |
| 1800552 | NM_000424.4(KRT5):c.1408T>C (p.Tyr470His) | Pathogenic |
| 21174 | NM_000424.4(KRT5):c.1429G>A (p.Glu477Lys) | Pathogenic |
| 2581743 | NM_000424.4(KRT5):c.528C>A (p.Asn176Lys) | Pathogenic |
| 265218 | NM_000424.4(KRT5):c.555+1G>A | Pathogenic |
SpliceAI
679 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:52515241:C:CC | acceptor_gain | 1.0000 |
| 12:52515796:A:AC | donor_gain | 1.0000 |
| 12:52515797:C:CA | donor_gain | 1.0000 |
| 12:52515833:C:CC | acceptor_gain | 1.0000 |
| 12:52516633:TCA:T | donor_loss | 1.0000 |
| 12:52516634:CA:C | donor_loss | 1.0000 |
| 12:52516635:A:AC | donor_gain | 1.0000 |
| 12:52516635:ACCTG:A | donor_gain | 1.0000 |
| 12:52516636:C:A | donor_loss | 1.0000 |
| 12:52516636:C:CC | donor_gain | 1.0000 |
| 12:52516636:CCTG:C | donor_gain | 1.0000 |
| 12:52516636:CCTGC:C | donor_gain | 1.0000 |
| 12:52516853:GCGCA:G | acceptor_gain | 1.0000 |
| 12:52516854:CGCA:C | acceptor_gain | 1.0000 |
| 12:52516854:CGCAC:C | acceptor_gain | 1.0000 |
| 12:52516855:GCA:G | acceptor_gain | 1.0000 |
| 12:52516856:CA:C | acceptor_gain | 1.0000 |
| 12:52516856:CAC:C | acceptor_gain | 1.0000 |
| 12:52516858:C:CC | acceptor_gain | 1.0000 |
| 12:52516861:C:CT | acceptor_gain | 1.0000 |
| 12:52516862:A:T | acceptor_gain | 1.0000 |
| 12:52516864:A:AC | acceptor_gain | 1.0000 |
| 12:52516864:A:C | acceptor_gain | 1.0000 |
| 12:52517103:CTA:C | donor_loss | 1.0000 |
| 12:52517105:A:AT | donor_loss | 1.0000 |
| 12:52517106:C:CT | donor_loss | 1.0000 |
| 12:52517229:CATA:C | acceptor_gain | 1.0000 |
| 12:52517230:ATA:A | acceptor_gain | 1.0000 |
| 12:52517231:TA:T | acceptor_gain | 1.0000 |
| 12:52517232:ACTGA:A | acceptor_loss | 1.0000 |
AlphaMissense
3876 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:52516688:A:G | L463P | 1.000 |
| 12:52516827:C:G | A417P | 1.000 |
| 12:52517189:A:G | L379P | 1.000 |
| 12:52517222:A:G | L368P | 1.000 |
| 12:52517613:C:G | A357P | 1.000 |
| 12:52517633:G:T | A350D | 1.000 |
| 12:52517634:C:G | A350P | 1.000 |
| 12:52517986:C:G | D280H | 1.000 |
| 12:52518106:C:A | K276N | 1.000 |
| 12:52518106:C:G | K276N | 1.000 |
| 12:52518108:T:C | K276E | 1.000 |
| 12:52518110:A:G | L275P | 1.000 |
| 12:52518118:A:C | F272L | 1.000 |
| 12:52518118:A:T | F272L | 1.000 |
| 12:52518119:A:G | F272S | 1.000 |
| 12:52518120:A:G | F272L | 1.000 |
| 12:52518128:T:A | E269V | 1.000 |
| 12:52518132:C:G | A268P | 1.000 |
| 12:52518140:C:G | R265P | 1.000 |
| 12:52518141:G:T | R265S | 1.000 |
| 12:52519129:A:G | L196P | 1.000 |
| 12:52519150:A:G | L189P | 1.000 |
| 12:52519749:A:T | I183N | 1.000 |
| 12:52519758:G:T | A180D | 1.000 |
| 12:52519760:A:C | F179L | 1.000 |
| 12:52519760:A:T | F179L | 1.000 |
| 12:52519761:A:C | F179C | 1.000 |
| 12:52519761:A:G | F179S | 1.000 |
| 12:52519762:A:G | F179L | 1.000 |
| 12:52519769:G:C | N176K | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000611681 (12:52517537 T>C), RS1000639071 (12:52522198 G>T), RS1000671670 (12:52522048 A>C), RS1000913193 (12:52516369 G>A), RS1001988561 (12:52515311 T>C), RS1002474985 (12:52514770 C>G,T), RS1003252770 (12:52521356 T>C), RS1003421862 (12:52516424 C>G), RS1003961421 (12:52521156 G>C), RS1004311952 (12:52521304 T>C,G), RS1006252616 (12:52522197 T>A,G), RS1006432596 (12:52517213 G>A), RS1006600257 (12:52514352 A>T), RS1006999811 (12:52514506 A>G), RS1007066773 (12:52514151 G>A)
Disease associations
OMIM: gene MIM:148040 | disease phenotypes: MIM:131760, MIM:609352, MIM:619555, MIM:619588, MIM:131800, MIM:619594, MIM:131900, MIM:131960, MIM:601001, MIM:179850, MIM:619599
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| epidermolysis bullosa simplex 1A, generalized severe | Definitive | Autosomal dominant |
| epidermolysis bullosa simplex 2F, with mottled pigmentation | Definitive | Autosomal dominant |
| Dowling-Degos disease | Definitive | Autosomal dominant |
| Dowling-Degos disease 1 | Strong | Autosomal dominant |
| epidermolysis bullosa simplex 2d, generalized, intermediate or severe, autosomal recessive | Strong | Autosomal recessive |
| epidermolysis bullosa simplex 1C, localized | Strong | Autosomal dominant |
| epidermolysis bullosa simplex 1B, generalized intermediate | Strong | Autosomal dominant |
| epidermolysis bullosa simplex 2B, generalized intermediate | Strong | Autosomal dominant |
| epidermolysis bullosa | Strong | Autosomal dominant |
| epidermolysis bullosa simplex 2E, with migratory circinate erythema | Supportive | Autosomal dominant |
Mondo (14): epidermolysis bullosa simplex (MONDO:0017610), epidermolysis bullosa simplex 1A, generalized severe (MONDO:0007550), epidermolysis bullosa simplex 2E, with migratory circinate erythema (MONDO:0012258), epidermolysis bullosa simplex 2A, generalized severe (MONDO:0030489), epidermolysis bullosa simplex 2B, generalized intermediate (MONDO:0030525), epidermolysis bullosa simplex 1C, localized (MONDO:0007551), epidermolysis bullosa simplex 2C, localized (MONDO:0030527), epidermolysis bullosa simplex 1B, generalized intermediate (MONDO:0007554), epidermolysis bullosa simplex 2F, with mottled pigmentation (MONDO:0007556), epidermolysis bullosa simplex 1D, generalized, intermediate or severe, autosomal recessive (MONDO:0010976), Dowling-Degos disease 1 (MONDO:0024534), epidermolysis bullosa simplex 2d, generalized, intermediate or severe, autosomal recessive (MONDO:0030535), epidermolysis bullosa (MONDO:0006541), Dowling-Degos disease (MONDO:0008371)
Orphanet (8): Epidermolysis bullosa simplex (Orphanet:304), Autosomal dominant generalized epidermolysis bullosa simplex, severe form (Orphanet:79396), Epidermolysis bullosa simplex with circinate migratory erythema (Orphanet:158681), Localized epidermolysis bullosa simplex (Orphanet:79400), Dowling-Degos disease (Orphanet:79145), Epidermolysis bullosa simplex with mottled pigmentation (Orphanet:79397), Autosomal dominant generalized epidermolysis bullosa simplex, intermediate form (Orphanet:79399), Autosomal recessive generalized epidermolysis bullosa simplex (Orphanet:89838)
HPO phenotypes
121 total (30 of 121 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000164 | Abnormality of the dentition |
| HP:0000365 | Hearing impairment |
| HP:0000464 | Abnormality of the neck |
| HP:0000478 | Abnormality of the eye |
| HP:0000540 | Hypermetropia |
| HP:0000613 | Photophobia |
| HP:0000768 | Pectus carinatum |
| HP:0000953 | Hyperpigmentation of the skin |
| HP:0000962 | Hyperkeratosis |
| HP:0000972 | Palmoplantar hyperkeratosis |
| HP:0000975 | Hyperhidrosis |
| HP:0000982 | Palmoplantar keratoderma |
| HP:0000989 | Pruritus |
| HP:0000992 | Cutaneous photosensitivity |
| HP:0001010 | Hypopigmentation of the skin |
| HP:0001030 | Fragile skin |
| HP:0001034 | Hypermelanotic macule |
| HP:0001036 | Parakeratosis |
| HP:0001056 | Milia |
| HP:0001057 | Aplasia cutis congenita |
| HP:0001070 | Mottled pigmentation |
| HP:0001075 | Atrophic scars |
| HP:0001155 | Abnormality of the hand |
| HP:0001231 | Abnormal fingernail morphology |
| HP:0001263 | Global developmental delay |
| HP:0001363 | Craniosynostosis |
| HP:0001369 | Arthritis |
| HP:0001508 | Failure to thrive |
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002331_6 | Basal cell carcinoma | 3.000000e-06 |
| GCST002842_4 | Basal cell carcinoma | 9.000000e-09 |
| GCST003726_17 | Basal cell carcinoma | 1.000000e-15 |
| GCST005896_69 | Non-melanoma skin cancer | 2.000000e-12 |
| GCST008870_73 | Keratinocyte cancer (MTAG) | 2.000000e-23 |
| GCST008870_79 | Keratinocyte cancer (MTAG) | 2.000000e-32 |
| GCST008871_51 | Basal cell carcinoma | 2.000000e-34 |
| GCST008872_16 | Squamous cell carcinoma | 2.000000e-06 |
| GCST010148_19 | Cutaneous squamous cell carcinoma | 2.000000e-09 |
| GCST90013410_51 | Basal cell carcinoma | 3.000000e-25 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009260 | non-melanoma skin carcinoma |
| EFO:0010176 | keratinocyte carcinoma |
| EFO:1001927 | cutaneous squamous cell carcinoma |
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D004820 | Epidermolysis Bullosa | C16.131.831.493; C16.320.850.275; C17.800.804.493; C17.800.827.275; C17.800.865.410 |
| D016110 | Epidermolysis Bullosa Simplex | C16.131.831.493.180; C16.320.850.275.180; C17.800.804.493.180; C17.800.827.275.180; C17.800.865.410.180 |
| C562924 | Dowling-Degos Disease (supp.) | |
| C563730 | Epidermolysis Bullosa Simplex with Migratory Circinate Erythema (supp.) | |
| C563408 | Epidermolysis Bullosa Simplex, Autosomal Recessive (supp.) | |
| C535959 | Epidermolysis bullosa simplex with mottled pigmentation (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
83 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects expression, decreases expression, decreases methylation, increases expression | 9 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 6 |
| Benzo(a)pyrene | increases methylation, increases mutagenesis, affects methylation, decreases methylation | 3 |
| Cadmium | increases abundance, increases expression, affects binding | 3 |
| Mustard Gas | affects binding, increases reaction, increases alkylation, increases phosphorylation | 3 |
| bisphenol A | affects expression, increases expression | 2 |
| arsenite | increases expression, decreases reaction | 2 |
| chloropicrin | affects expression, decreases expression | 2 |
| perfluoro-n-nonanoic acid | decreases expression | 2 |
| Alitretinoin | decreases expression | 2 |
| Acetaminophen | decreases expression | 2 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation, decreases expression | 2 |
| Estradiol | affects cotreatment, decreases expression | 2 |
| Smoke | decreases expression, increases expression | 2 |
| Cadmium Chloride | increases abundance, increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, affects cotreatment, increases expression | 2 |
| 4-oxoretinoic acid | decreases expression | 1 |
| beauvericin | affects cotreatment, increases expression | 1 |
| methyleugenol | decreases expression | 1 |
| alpha-pinene | increases oxidation, increases abundance, affects cotreatment | 1 |
| glycidyl methacrylate | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | increases expression, affects cotreatment, affects localization, decreases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| phenyl isocyanate | affects binding | 1 |
| sulindac sulfide | decreases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| cupric chloride | increases expression | 1 |
| phenanthrene | decreases expression | 1 |
| ethyl-p-((E)-2-(5,6,7,8-tetrahydro-5,5,8,8-tetramethyl-2-naphthyl)-1-propenyl)benzoic acid | decreases expression | 1 |
| perfluorodecanoic acid | decreases expression | 1 |
Cellosaurus cell lines
8 cell lines: 4 induced pluripotent stem cell, 4 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C0G7 | UQACi003-A | Induced pluripotent stem cell | Male |
| CVCL_C0G8 | UQACi004-A | Induced pluripotent stem cell | Male |
| CVCL_C0G9 | UQACi006-A | Induced pluripotent stem cell | Female |
| CVCL_UJ78 | MLi002-A | Induced pluripotent stem cell | Female |
| CVCL_ZE24 | EB21 | Transformed cell line | Male |
| CVCL_ZE25 | EB22 | Transformed cell line | Male |
| CVCL_ZE28 | EB11 | Transformed cell line | Female |
| CVCL_ZE29 | EB12 | Transformed cell line | Female |
Clinical trials (associated diseases)
80 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00336154 | PHASE4 | WITHDRAWN | Study to Evaluate the Efficacy of Tetracycline in Epidermolysis Bullosa |
| NCT01619670 | PHASE4 | TERMINATED | A Observational Study to Evaluate Apligraf(R) in Nonhealing Wounds of Subjects With Epidermolysis Bullosa |
| NCT07240649 | PHASE4 | NOT_YET_RECRUITING | Outcomes From Hyperbaric Oxygen (HBO2) Treatment for Emerging Indications |
| NCT07596927 | PHASE4 | ACTIVE_NOT_RECRUITING | Curcumin-Based Photodynamic Therapy in Epidermolysis Bullosa: Wound Healing, Quality of Life, and Salivary Biomarkers |
| NCT05067127 | PHASE3 | COMPLETED | Phase III Study Assessing the Efficacy and Safety of Pegcetacoplan in Patients With C3 Glomerulopathy or Immune-Complex Membranoproliferative Glomerulonephritis |
| NCT05809531 | PHASE3 | ACTIVE_NOT_RECRUITING | An Open-Label, Nonrandomized, Multicenter Extension Study to Evaluate the Long-term Safety and Efficacy of Pegcetacoplan in Participants With C3 Glomerulopathy or Immune-Complex Membranoproliferative Glomerulonephritis |
| NCT01340235 | PHASE3 | UNKNOWN | Treatment of Dowling Maera Type of Epidermolysis Bullosa Simplex by Oral Erythromycin |
| NCT01749306 | PHASE3 | TERMINATED | A Study of the Efficacy and Safety of ABH001 in the Treatment of Patients With Epidermolysis Bullosa Who Have Wounds That Are Not Healing |
| NCT02384460 | PHASE3 | COMPLETED | ESSENCE Study: Efficacy and Safety of SD-101 Cream in Participants With Epidermolysis Bullosa |
| NCT02670330 | PHASE3 | TERMINATED | Open Label Extension Study to Evaluate the Long-term Safety of Zorblisa (SD-101-6.0) in Patients With Epidermolysis Bullosa |
| NCT03068780 | PHASE3 | COMPLETED | Phase III Efficacy and Safety Study of Oleogel-S10 in Epidermolysis Bullosa |
| NCT03928093 | PHASE3 | COMPLETED | Pregabalin Treatment for RDEB Pain and Itch |
| NCT04227106 | PHASE3 | COMPLETED | Phase 3, Open-label Clinical Trial of EB-101 for the Treatment of Recessive Dystrophic Epidermolysis Bullosa (RDEB) |
| NCT05464381 | PHASE3 | ACTIVE_NOT_RECRUITING | Allogeneic ABCB5-positive Dermal Mesenchymal Stromal Cells for Treatment of Epidermolysis Bullosa (Phase III, Cross-over) |
| NCT05725018 | PHASE3 | ACTIVE_NOT_RECRUITING | A Phase 3b Study for the Treatment of Dystrophic Epidermolysis Bullosa (DEB) in New and Previously EB-101 Treated Patients |
| NCT05838092 | PHASE3 | ACTIVE_NOT_RECRUITING | Allogeneic ABCB5-positive Dermal Mesenchymal Stromal Cells for Treatment of Epidermolysis Bullosa (Phase III) |
| NCT06917690 | PHASE3 | RECRUITING | A Study to Learn About the Safety and Efficacy of the Drug Oleogel-S10 in Japanese Patients With Epidermolysis Bullosa |
| NCT07482787 | PHASE3 | NOT_YET_RECRUITING | Efficacy and Safety Study to Evaluate SD-101 in Epidermolysis Bullosa |
| NCT07482813 | PHASE3 | NOT_YET_RECRUITING | An Open Label Extension Safety Study to Evaluate SD-101 in Epidermolysis Bullosa |
| NCT02960997 | PHASE2 | COMPLETED | Using Topical Sirolimus 2% for Patients With Epidermolysis Bullous Simplex (EBS) Study |
| NCT03016715 | PHASE2 | UNKNOWN | Using Topical Sirolimus 2% for Patients With Epidermolysis Bullous Simplex (EBS) Study |
| NCT00311766 | PHASE2 | TERMINATED | A Phase 2 Study on Effect of Thymosin Beta 4 on Wound Healing in Patients With Epidermolysis Bullosa |
| NCT00380640 | PHASE2 | COMPLETED | The Efficacy of Trimethoprim in Wound Healing of Patients With Epidermolysis Bullosa |
| NCT00825565 | PHASE2 | COMPLETED | Study of Alwextin® Cream in Treating Epidermolysis Bullosa |
| NCT00987142 | PHASE2 | COMPLETED | Trial To Assess Efficacy Of A Chimeric Skin In Patients With Epidermolysys Bullosa |
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| NCT02090283 | PHASE2 | TERMINATED | Open-Label Extension Study to Evaluate the Safety of SD-101 Cream in Participants With Epidermolysis Bullosa |
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| NCT03836001 | PHASE2 | COMPLETED | A Neurokinin-1 Receptor Antagonist for the Treatment of Pruritus in Patients With Epidermolysis Bullosa |
| NCT05288478 | PHASE2 | UNKNOWN | Dose-ranging Study of Dentoxol® Mouthrinse for Managing Oral Symptoms in People With Epidermolysis Bullosa. |
| NCT06594393 | PHASE2 | RECRUITING | A Phase 2 Study of TCP-25 Gel in Patients With Epidermolysis Bullosa, STEP-study |
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| NCT02470689 | PHASE2 | UNKNOWN | Diacerin for the Treatment of Epidermolysis Bullosa Simplex |
| NCT03154333 | PHASE2 | TERMINATED | Safety and Efficacy of Diacerein 1% Ointment for Subjects With Epidermolysis Bullosa Simplex (EBS) |
| NCT04908215 | PHASE2 | COMPLETED | INM-755 (Cannabinol) Cream for Treatment of Epidermolysis Bullosa |
| NCT06136403 | PHASE2 | RECRUITING | A 44-week Monocentric Open Study Assessing the Efficacy and Safety of Deucravacitinib in Adults With Inflammatory Genodermatoses |
| NCT06509984 | PHASE2 | RECRUITING | A 20-Week Study Assessing the Efficacy of Apremilast in Patients with EB Simplex Generalized |
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Related Atlas pages
- Associated diseases: epidermolysis bullosa simplex 1A, generalized severe, Dowling-Degos disease 1, epidermolysis bullosa simplex 2d, generalized, intermediate or severe, autosomal recessive, epidermolysis bullosa simplex 1C, localized, epidermolysis bullosa simplex 1B, generalized intermediate, epidermolysis bullosa simplex 2F, with mottled pigmentation, epidermolysis bullosa simplex 2B, generalized intermediate, epidermolysis bullosa simplex 2E, with migratory circinate erythema, Dowling-Degos disease, epidermolysis bullosa
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Dowling-Degos disease, Dowling-Degos disease 1, epidermolysis bullosa, epidermolysis bullosa simplex, epidermolysis bullosa simplex 1A, generalized severe, epidermolysis bullosa simplex 1B, generalized intermediate, epidermolysis bullosa simplex 1C, localized, epidermolysis bullosa simplex 1D, generalized, intermediate or severe, autosomal recessive, epidermolysis bullosa simplex 2A, generalized severe, epidermolysis bullosa simplex 2B, generalized intermediate, epidermolysis bullosa simplex 2C, localized, epidermolysis bullosa simplex 2d, generalized, intermediate or severe, autosomal recessive, epidermolysis bullosa simplex 2E, with migratory circinate erythema, epidermolysis bullosa simplex 2F, with mottled pigmentation, squamous cell carcinoma