KRTCAP2
gene geneOn this page
Also known as KCP2
Summary
KRTCAP2 (keratinocyte associated protein 2, HGNC:28942) is a protein-coding gene on chromosome 1q22, encoding Dolichyl-diphosphooligosaccharide–protein glycosyltransferase subunit KCP2 (Q8N6L1). Subunit of STT3A-containing oligosaccharyl transferase (OST-A) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in….
Enables enzyme activator activity and protein-macromolecule adaptor activity. Involved in protein N-linked glycosylation via asparagine. Part of oligosaccharyltransferase complex.
Source: NCBI Gene 200185 — RefSeq curated summary.
At a glance
- GWAS associations: 31
- Clinical variants (ClinVar): 33 total
- Druggable target: yes
- MANE Select transcript:
NM_173852
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28942 |
| Approved symbol | KRTCAP2 |
| Name | keratinocyte associated protein 2 |
| Location | 1q22 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KCP2 |
| Ensembl gene | ENSG00000163463 |
| Ensembl biotype | protein_coding |
| OMIM | 619029 |
| Entrez | 200185 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 9 protein_coding, 3 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000295682, ENST00000461136, ENST00000463527, ENST00000471891, ENST00000482246, ENST00000487350, ENST00000490672, ENST00000491084, ENST00000497317, ENST00000858475, ENST00000858476, ENST00000922702, ENST00000922703, ENST00000922704
RefSeq mRNA: 1 — MANE Select: NM_173852
NM_173852
CCDS: CCDS1096
Canonical transcript exons
ENST00000295682 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001252953 | 155173221 | 155173304 |
| ENSE00003480478 | 155172738 | 155172892 |
| ENSE00003565698 | 155169408 | 155169560 |
| ENSE00003597368 | 155169791 | 155169857 |
| ENSE00003692185 | 155172565 | 155172628 |
Expression profiles
Bgee: expression breadth ubiquitous, 174 present calls, max score 99.40.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 210.0663 / max 1263.2011, expressed in 1828 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 14904 | 206.9187 | 1828 |
| 14903 | 3.1476 | 1441 |
Top tissues by expression
240 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left testis | UBERON:0004533 | 99.40 | gold quality |
| right testis | UBERON:0004534 | 99.40 | gold quality |
| bone marrow cell | CL:0002092 | 99.10 | gold quality |
| endocervix | UBERON:0000458 | 99.10 | gold quality |
| body of pancreas | UBERON:0001150 | 99.10 | gold quality |
| body of uterus | UBERON:0009853 | 99.05 | gold quality |
| body of stomach | UBERON:0001161 | 99.00 | gold quality |
| adenohypophysis | UBERON:0002196 | 99.00 | gold quality |
| stromal cell of endometrium | CL:0002255 | 98.99 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 98.99 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 98.97 | gold quality |
| left uterine tube | UBERON:0001303 | 98.94 | gold quality |
| right ovary | UBERON:0002118 | 98.90 | gold quality |
| left coronary artery | UBERON:0001626 | 98.88 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 98.87 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 98.87 | gold quality |
| minor salivary gland | UBERON:0001830 | 98.83 | gold quality |
| right coronary artery | UBERON:0001625 | 98.82 | gold quality |
| right uterine tube | UBERON:0001302 | 98.79 | gold quality |
| left ovary | UBERON:0002119 | 98.78 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 98.75 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 98.74 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 98.73 | gold quality |
| thoracic aorta | UBERON:0001515 | 98.73 | gold quality |
| ectocervix | UBERON:0012249 | 98.73 | gold quality |
| ascending aorta | UBERON:0001496 | 98.72 | gold quality |
| lower esophagus | UBERON:0013473 | 98.71 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 98.71 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 98.70 | gold quality |
| left adrenal gland | UBERON:0001234 | 98.68 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-88 | yes | 93.07 |
| E-HCAD-4 | yes | 57.96 |
| E-CURD-46 | yes | 52.96 |
| E-HCAD-5 | yes | 34.20 |
| E-HCAD-1 | yes | 16.80 |
| E-MTAB-10553 | yes | 10.24 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 3)
- data strongly support the proposal that KCP2 is a newly identified subunit of the N-glycosylation machinery present in a subset of eukaryotes (PMID:22266900)
- DC2 and KCP2 mediate the interaction between the oligosaccharyltransferase STT3A and the endoplasmic reticulum translocon. (PMID:28860277)
- KRTCAP2 as an immunological and prognostic biomarker of hepatocellular carcinoma. (PMID:36634487)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | krtcap2 | ENSDARG00000070386 |
| mus_musculus | Krtcap2 | ENSMUSG00000042747 |
| rattus_norvegicus | Krtcap2 | ENSRNOG00000020542 |
| drosophila_melanogaster | CG31460 | FBGN0051460 |
Protein
Protein identifiers
Dolichyl-diphosphooligosaccharide–protein glycosyltransferase subunit KCP2 — Q8N6L1 (reviewed: Q8N6L1)
Alternative names: Keratinocyte-associated protein 2
All UniProt accessions (4): A0A6I8PLD9, A0A6I8PLE4, A0A6I8PRU6, Q8N6L1
UniProt curated annotations — full annotation on UniProt →
Function. Subunit of STT3A-containing oligosaccharyl transferase (OST-A) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). Within the OST-A complex, acts as an adapter that anchors the OST-A complex to the Sec61 complex. May be involved in N-glycosylation of APP (amyloid-beta precursor protein). Can modulate gamma-secretase cleavage of APP by enhancing endoprotelysis of PSEN1.
Subunit / interactions. Component of STT3A-containing oligosaccharyl transferase (OST-A) complex. STT3A-containing complex assembly occurs through the formation of 3 subcomplexes. Subcomplex 1 contains RPN1 and TMEM258, subcomplex 2 contains the STT3A-specific subunits STT3A, DC2/OSTC, and KCP2 as well as the core subunit OST4, and subcomplex 3 contains RPN2, DAD1, and OST48. The OST-A complex can form stable complexes with the Sec61 complex or with both the Sec61 and TRAP complexes. Interacts with PSEN1 and NCSTN; indicative for an association with the gamma-secretase complex.
Subcellular location. Endoplasmic reticulum. Endoplasmic reticulum membrane.
Tissue specificity. Expressed in skin, heart, placental, liver, skeletal muscle, kidney, pancreas, keratinocytes and dermal fibroblasts.
Pathway. Protein modification; protein glycosylation.
Miscellaneous. Produced at low levels due to suboptimal Kozak context.
Similarity. Belongs to the KRTCAP2 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8N6L1-1 | 1 | yes |
| Q8N6L1-2 | 2 |
RefSeq proteins (1): NP_776251* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR018614 | KRTCAP2 | Family |
Pfam: PF09775
UniProt features (13 total): topological domain 4, transmembrane region 3, chain 1, splice variant 1, sequence variant 1, sequence conflict 1, short sequence motif 1, modified residue 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9N9J | ELECTRON MICROSCOPY | 3.2 |
| 9YGY | ELECTRON MICROSCOPY | 4.1 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8N6L1-F1 | 82.91 | 0.60 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 124
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 162 (showing top):
TGCGCANK_UNKNOWN, GOBP_PROTEIN_N_LINKED_GLYCOSYLATION, GCANCTGNY_MYOD_Q6, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, MAZ_Q6, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GGGTGGRR_PAX4_03, CAGCTG_AP4_Q5, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOLDRATH_ANTIGEN_RESPONSE, SRF_Q5_01, MARTINEZ_RB1_TARGETS_UP, SRF_C, WANG_LMO4_TARGETS_DN, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM1
GO Biological Process (3): protein N-linked glycosylation (GO:0006487), obsolete protein N-linked glycosylation via asparagine (GO:0018279), obsolete protein glycosylation (GO:0006486)
GO Molecular Function (2): enzyme activator activity (GO:0008047), protein-macromolecule adaptor activity (GO:0030674)
GO Cellular Component (5): endoplasmic reticulum membrane (GO:0005789), oligosaccharyltransferase complex (GO:0008250), oligosaccharyltransferase complex A (GO:0160226), endoplasmic reticulum (GO:0005783), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| glycoprotein biosynthetic process | 1 |
| catalytic activity | 1 |
| enzyme regulator activity | 1 |
| molecular function activator activity | 1 |
| protein binding | 1 |
| molecular adaptor activity | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| endoplasmic reticulum membrane | 1 |
| membrane protein complex | 1 |
| endoplasmic reticulum protein-containing complex | 1 |
| transferase complex | 1 |
| oligosaccharyltransferase complex | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
920 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| KRTCAP2 | OSTC | Q9NRP0 | 913 |
| KRTCAP2 | DAD1 | P46966 | 856 |
| KRTCAP2 | STT3A | P46977 | 831 |
| KRTCAP2 | TMEM258 | P61165 | 820 |
| KRTCAP2 | DDOST | P39656 | 780 |
| KRTCAP2 | STT3B | Q8TCJ2 | 780 |
| KRTCAP2 | TUSC3 | Q13454 | 737 |
| KRTCAP2 | RPN1 | P04843 | 734 |
| KRTCAP2 | MAGT1 | Q9H0U3 | 731 |
| KRTCAP2 | RPN2 | P04844 | 730 |
| KRTCAP2 | OST4 | P0C6T2 | 726 |
| KRTCAP2 | TRIM46 | Q7Z4K8 | 707 |
| KRTCAP2 | ERG28 | Q9UKR5 | 664 |
| KRTCAP2 | IER3IP1 | Q9Y5U9 | 570 |
| KRTCAP2 | EMC7 | Q9NPA0 | 514 |
IntAct
33 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| RPN1 | APBB1 | psi-mi:“MI:0914”(association) | 0.530 |
| CREB3 | KRTCAP2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| KRTCAP2 | psi-mi:“MI:0915”(physical association) | 0.370 | |
| HSCB | RBP5 | psi-mi:“MI:0914”(association) | 0.350 |
| TSPO | psi-mi:“MI:0914”(association) | 0.350 | |
| CANX | HLA-A | psi-mi:“MI:0914”(association) | 0.350 |
| DAD1 | PGRMC1 | psi-mi:“MI:0914”(association) | 0.350 |
| DDOST | ATL3 | psi-mi:“MI:0914”(association) | 0.350 |
| DRG1 | RPS3A | psi-mi:“MI:0914”(association) | 0.350 |
| KRTCAP2 | PGRMC1 | psi-mi:“MI:0914”(association) | 0.350 |
| OST4 | ATL3 | psi-mi:“MI:0914”(association) | 0.350 |
| OSTC | PGRMC1 | psi-mi:“MI:0914”(association) | 0.350 |
| PGRMC1 | NBAS | psi-mi:“MI:0914”(association) | 0.350 |
| RACK1 | RPS3A | psi-mi:“MI:0914”(association) | 0.350 |
| RBM14 | TBKBP1 | psi-mi:“MI:0914”(association) | 0.350 |
| RBM42 | RPS3A | psi-mi:“MI:0914”(association) | 0.350 |
| RPN2 | APBB1 | psi-mi:“MI:0914”(association) | 0.350 |
| VAPA | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| TIA1 | RPN1 | psi-mi:“MI:0914”(association) | 0.350 |
| KRTCAP2 | PLSCR1 | psi-mi:“MI:0914”(association) | 0.350 |
| KRTCAP2 | RAP2B | psi-mi:“MI:0914”(association) | 0.350 |
| P/V | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| NRAS | IGKV2D-24 | psi-mi:“MI:0914”(association) | 0.350 |
| TCTN3 | TMEM120B | psi-mi:“MI:2364”(proximity) | 0.270 |
| TCTN2 | TMEM120B | psi-mi:“MI:2364”(proximity) | 0.270 |
| SCLT1 | VWA8 | psi-mi:“MI:2364”(proximity) | 0.270 |
| VHL | KRTCAP2 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (89): STT3A (Affinity Capture-Western), STT3B (Affinity Capture-Western), KRTCAP2 (Two-hybrid), KRTCAP2 (Proximity Label-MS), KRTCAP2 (Proximity Label-MS), KRTCAP2 (Proximity Label-MS), KRTCAP2 (Two-hybrid), KRTCAP2 (Synthetic Lethality), KRTCAP2 (PCA), KRTCAP2 (PCA), KRTCAP2 (Affinity Capture-MS), KRTCAP2 (Proximity Label-MS), RMND1 (Affinity Capture-MS), CXCR4 (Affinity Capture-MS), IFITM1 (Affinity Capture-MS)
ESM2 similar proteins: A4IFN5, A6NI61, A6QQ59, B0CM95, B2KI79, B2LYG4, B2RZC9, D0Q0Y7, O35089, P22234, P86229, Q15546, Q1RMP9, Q2TA01, Q3ZCD7, Q5BJU5, Q5QJU3, Q5R589, Q5RB59, Q5RDB5, Q5RL79, Q5U3C3, Q64232, Q6IQ69, Q6PHN7, Q6PI25, Q6ZWS4, Q719N3, Q865K8, Q86WK9, Q86YN1, Q8BWB6, Q8IY49, Q8IZV2, Q8N6L1, Q8N6M3, Q8NBT3, Q8NFT2, Q8R189, Q8TBE1
Diamond homologs: A6QQ59, B2RZC9, P86229, Q1HQF8, Q295N5, Q5Q995, Q5RL79, Q8INQ7, Q8N6L1, Q54L98
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 39 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| PD-L1(CD274) glycosylation and translocation to plasma membrane | 6 | 97.3× | 2e-09 |
| Regulation of CDH1 posttranslational processing and trafficking to plasma membrane | 7 | 73.5× | 9e-10 |
| Maturation of spike protein | 7 | 58.1× | 2e-09 |
| Maturation of DENV proteins | 7 | 46.3× | 7e-09 |
| Asparagine N-linked glycosylation | 7 | 13.2× | 4e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| obsolete protein N-linked glycosylation via asparagine | 5 | 93.6× | 5e-07 |
| protein N-linked glycosylation | 6 | 43.9× | 6e-07 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
33 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 22 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1060 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:155169858:C:CC | acceptor_gain | 0.9900 |
| 1:155172327:C:A | donor_gain | 0.9900 |
| 1:155173194:T:TA | donor_gain | 0.9900 |
| 1:155170599:C:CA | donor_gain | 0.9800 |
| 1:155172563:A:AC | donor_gain | 0.9800 |
| 1:155172564:C:CC | donor_gain | 0.9800 |
| 1:155172564:CT:C | donor_gain | 0.9800 |
| 1:155172778:C:CA | donor_gain | 0.9800 |
| 1:155172326:T:TA | donor_gain | 0.9700 |
| 1:155172564:CTCT:C | donor_gain | 0.9700 |
| 1:155173224:T:C | donor_gain | 0.9600 |
| 1:155172208:T:TA | donor_gain | 0.9500 |
| 1:155173212:T:TA | donor_gain | 0.9500 |
| 1:155169561:C:CC | acceptor_gain | 0.9400 |
| 1:155172208:TC:T | donor_gain | 0.9400 |
| 1:155172221:C:CA | donor_gain | 0.9400 |
| 1:155172890:CCA:C | acceptor_gain | 0.9400 |
| 1:155172891:CAC:C | acceptor_gain | 0.9400 |
| 1:155173182:C:CA | donor_gain | 0.9400 |
| 1:155172205:A:C | donor_gain | 0.9300 |
| 1:155172362:G:A | donor_gain | 0.9300 |
| 1:155172545:AAGCT:A | donor_gain | 0.9300 |
| 1:155172893:C:CC | acceptor_gain | 0.9300 |
| 1:155173195:C:A | donor_gain | 0.9200 |
| 1:155172307:G:A | donor_gain | 0.9100 |
| 1:155169630:CA:C | acceptor_gain | 0.9000 |
| 1:155172321:A:T | donor_gain | 0.9000 |
| 1:155173110:C:CA | donor_gain | 0.9000 |
| 1:155169632:C:CC | acceptor_gain | 0.8900 |
| 1:155171337:TGA:T | donor_gain | 0.8900 |
AlphaMissense
1035 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000388388 (1:155174402 G>A,T), RS1000594297 (1:155174474 C>G), RS1000687791 (1:155173146 G>A,T), RS1001596146 (1:155172988 C>A,T), RS1002542742 (1:155173437 C>G,T), RS1002695606 (1:155169678 G>A,C,T), RS1002747663 (1:155169325 A>G), RS1003014142 (1:155171490 G>C), RS1003819564 (1:155170090 G>A), RS1004061486 (1:155170562 A>G), RS1006486233 (1:155171883 G>A), RS1006706192 (1:155172069 A>ATT), RS1007712368 (1:155170896 T>C), RS1007743361 (1:155170545 TGA>T), RS1008293165 (1:155175210 A>C,G)
Disease associations
OMIM: gene MIM:619029 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
31 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004131_70 | Inflammatory bowel disease | 6.000000e-08 |
| GCST004132_44 | Crohn’s disease | 2.000000e-07 |
| GCST007045_14 | PR interval | 6.000000e-10 |
| GCST007293_59 | Body fat distribution (arm fat ratio) | 6.000000e-08 |
| GCST007293_94 | Body fat distribution (arm fat ratio) | 4.000000e-11 |
| GCST007294_124 | Body fat distribution (trunk fat ratio) | 8.000000e-35 |
| GCST007294_3 | Body fat distribution (trunk fat ratio) | 6.000000e-21 |
| GCST007294_50 | Body fat distribution (trunk fat ratio) | 1.000000e-15 |
| GCST007295_17 | Body fat distribution (leg fat ratio) | 3.000000e-13 |
| GCST007295_37 | Body fat distribution (leg fat ratio) | 7.000000e-17 |
| GCST007295_72 | Body fat distribution (leg fat ratio) | 1.000000e-28 |
| GCST007430_19 | Peak expiratory flow | 8.000000e-09 |
| GCST007431_112 | Lung function (FEV1/FVC) | 1.000000e-20 |
| GCST008295_16 | Number of decayed, missing and filled tooth surfaces or use of dentures | 7.000000e-15 |
| GCST008306_23 | Dentures | 3.000000e-13 |
| GCST008767_2 | Perceived intensity of sucrose | 4.000000e-07 |
| GCST008794_18 | Urinary albumin-to-creatinine ratio | 2.000000e-15 |
| GCST009325_27 | Parkinson’s disease or first degree relation to individual with Parkinson’s disease | 2.000000e-70 |
| GCST009640_5 | Urinary albumin-to-creatinine ratio | 5.000000e-12 |
| GCST010002_367 | Refractive error | 5.000000e-13 |
| GCST010321_101 | PR interval | 2.000000e-25 |
| GCST010696_19 | Cortical thickness (min-P) | 2.000000e-10 |
| GCST010697_10 | Cortical surface area (min-P) | 3.000000e-10 |
| GCST010698_59 | Subcortical volume (min-P) | 9.000000e-10 |
| GCST010699_20 | Brain morphology (min-P) | 7.000000e-10 |
| GCST010700_5 | Cortical thickness (MOSTest) | 8.000000e-17 |
| GCST010701_66 | Cortical surface area (MOSTest) | 1.000000e-09 |
| GCST010702_43 | Subcortical volume (MOSTest) | 3.000000e-10 |
| GCST010703_253 | Brain morphology (MOSTest) | 4.000000e-14 |
| GCST010984_3 | Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis) | 2.000000e-08 |
EFO canonical traits (9, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004462 | PR interval |
| EFO:0004341 | body fat distribution |
| EFO:0009718 | peak expiratory flow |
| EFO:0004713 | FEV/FVC ratio |
| EFO:0010078 | dentures |
| EFO:0007778 | urinary albumin to creatinine ratio |
| EFO:0004346 | neuroimaging measurement |
| EFO:0004840 | cortical thickness |
| EFO:0004847 | age at onset |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067100 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
4 potent at pChembl≥5 of 4 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.78 | Kd | 164.5 | nM | CHEMBL3752910 |
| 6.78 | ED50 | 164.5 | nM | CHEMBL3752910 |
| 5.12 | Kd | 7592 | nM | CHEMBL5653589 |
| 5.12 | ED50 | 7592 | nM | CHEMBL5653589 |
PubChem BioAssay actives
2 with measured affinity, of 4 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148631: Binding affinity to human KRTCAP2 incubated for 45 mins by Kinobead based pull down assay | kd | 0.1645 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148631: Binding affinity to human KRTCAP2 incubated for 45 mins by Kinobead based pull down assay | kd | 7.5923 | uM |
CTD chemical–gene interactions
31 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, increases methylation | 3 |
| Cyclosporine | increases expression | 3 |
| Tunicamycin | increases expression | 2 |
| Thapsigargin | increases expression | 2 |
| FR900359 | decreases phosphorylation | 1 |
| bisphenol A | affects expression | 1 |
| isobutyl alcohol | affects cotreatment, decreases expression, increases abundance | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| chloropicrin | increases expression | 1 |
| ICG 001 | increases expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, increases expression | 1 |
| bisphenol S | affects cotreatment, increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Catechin | increases expression, affects cotreatment | 1 |
| Cisplatin | decreases expression | 1 |
| Cycloheximide | affects cotreatment, increases expression | 1 |
| Dexamethasone | increases expression, affects cotreatment | 1 |
| Diuron | decreases expression | 1 |
| Gasoline | affects cotreatment, decreases expression, increases abundance | 1 |
| Indomethacin | affects cotreatment, increases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Polycyclic Aromatic Hydrocarbons | affects cotreatment, decreases expression, increases abundance | 1 |
| Smoke | decreases expression | 1 |
| Tetrachlorodibenzodioxin | affects cotreatment, increases expression | 1 |
| Thiram | decreases expression | 1 |
| 1-Methyl-3-isobutylxanthine | affects cotreatment, increases expression | 1 |
| Cadmium Chloride | decreases expression | 1 |
| 1-Butanol | affects cotreatment, decreases expression, increases abundance | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651673 | Binding | Binding affinity to human KRTCAP2 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
1 cell lines: 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2ZX | Abcam HEK293T KRTCAP2 KO | Transformed cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.