LAMA1
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Summary
LAMA1 (laminin subunit alpha 1, HGNC:6481) is a protein-coding gene on chromosome 18p11.31, encoding Laminin subunit alpha-1 (P25391). Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
This gene encodes one of the alpha 1 subunits of laminin. The laminins are a family of extracellular matrix glycoproteins that have a heterotrimeric structure consisting of an alpha, beta and gamma chain. These proteins make up a major component of the basement membrane and have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Mutations in this gene may be associated with Poretti-Boltshauser syndrome.
Source: NCBI Gene 284217 — RefSeq curated summary.
At a glance
- Gene–disease (curated): ataxia - intellectual disability - oculomotor apraxia - cerebellar cysts syndrome (Definitive, GenCC)
- GWAS associations: 7
- Clinical variants (ClinVar): 1,746 total — 81 pathogenic, 42 likely-pathogenic
- Phenotypes (HPO): 30
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_005559
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6481 |
| Approved symbol | LAMA1 |
| Name | laminin subunit alpha 1 |
| Location | 18p11.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000101680 |
| Ensembl biotype | protein_coding |
| OMIM | 150320 |
| Entrez | 284217 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 7 retained_intron, 5 protein_coding
ENST00000389658, ENST00000484335, ENST00000488064, ENST00000488089, ENST00000490190, ENST00000492048, ENST00000579014, ENST00000585178, ENST00000940200, ENST00000940201, ENST00000940202, ENST00000940203
RefSeq mRNA: 1 — MANE Select: NM_005559
NM_005559
CCDS: CCDS32787
Canonical transcript exons
ENST00000389658 — 63 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001497139 | 7117660 | 7117797 |
| ENSE00001506567 | 7042145 | 7042250 |
| ENSE00001506568 | 7043227 | 7043405 |
| ENSE00001946648 | 6941742 | 6942239 |
| ENSE00003459797 | 6985237 | 6985400 |
| ENSE00003459837 | 6961945 | 6962059 |
| ENSE00003460060 | 7007139 | 7007276 |
| ENSE00003460610 | 7040076 | 7040236 |
| ENSE00003460732 | 6978196 | 6978378 |
| ENSE00003462654 | 6947163 | 6947296 |
| ENSE00003470271 | 6982497 | 6982590 |
| ENSE00003471442 | 6997742 | 6997884 |
| ENSE00003481796 | 7049078 | 7049257 |
| ENSE00003487476 | 7010200 | 7010385 |
| ENSE00003490075 | 7011300 | 7011479 |
| ENSE00003503111 | 7037578 | 7037751 |
| ENSE00003505325 | 6943180 | 6943402 |
| ENSE00003505944 | 6974903 | 6975036 |
| ENSE00003507719 | 7002264 | 7002385 |
| ENSE00003510647 | 6956636 | 6956765 |
| ENSE00003514765 | 6955353 | 6955465 |
| ENSE00003528096 | 6973057 | 6973207 |
| ENSE00003531757 | 7079975 | 7080087 |
| ENSE00003532136 | 7035987 | 7036088 |
| ENSE00003534418 | 7013815 | 7014051 |
| ENSE00003539306 | 7046278 | 7046367 |
| ENSE00003545044 | 6977727 | 6977881 |
| ENSE00003549910 | 6959341 | 6959492 |
| ENSE00003561123 | 6980521 | 6980637 |
| ENSE00003561545 | 7038810 | 7038950 |
| ENSE00003564231 | 7080287 | 7080457 |
| ENSE00003565170 | 6986137 | 6986347 |
| ENSE00003569485 | 6949101 | 6949259 |
| ENSE00003572116 | 6975937 | 6976080 |
| ENSE00003574031 | 6999911 | 6999997 |
| ENSE00003582004 | 6971857 | 6971981 |
| ENSE00003585077 | 6999445 | 6999638 |
| ENSE00003585190 | 6965288 | 6965432 |
| ENSE00003588557 | 7016491 | 7016671 |
| ENSE00003590113 | 6993641 | 6993752 |
| ENSE00003592447 | 6948403 | 6948556 |
| ENSE00003599704 | 7025979 | 7026106 |
| ENSE00003608606 | 7015722 | 7015858 |
| ENSE00003610164 | 6961586 | 6961759 |
| ENSE00003611112 | 7017278 | 7017384 |
| ENSE00003611736 | 6958477 | 6958662 |
| ENSE00003616571 | 7009239 | 7009366 |
| ENSE00003622576 | 6983099 | 6983234 |
| ENSE00003628335 | 7008488 | 7008608 |
| ENSE00003630759 | 6950782 | 6950971 |
| ENSE00003642646 | 7011995 | 7012138 |
| ENSE00003652897 | 7044722 | 7044839 |
| ENSE00003653032 | 6985527 | 6985643 |
| ENSE00003658196 | 7032066 | 7032176 |
| ENSE00003661585 | 7024380 | 7024466 |
| ENSE00003663833 | 6966147 | 6966297 |
| ENSE00003666451 | 7050694 | 7050936 |
| ENSE00003666767 | 6992561 | 6992720 |
| ENSE00003668329 | 7034479 | 7034690 |
| ENSE00003670306 | 7032984 | 7033095 |
| ENSE00003670786 | 7023164 | 7023375 |
| ENSE00003672384 | 6995357 | 6995446 |
| ENSE00003694682 | 6964662 | 6964803 |
Expression profiles
Bgee: expression breadth ubiquitous, 171 present calls, max score 91.82.
FANTOM5 (CAGE): breadth broad, TPM avg 5.3685 / max 205.1486, expressed in 700 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 171152 | 3.6429 | 632 |
| 171153 | 1.1751 | 438 |
| 171151 | 0.5506 | 239 |
Top tissues by expression
259 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ventricular zone | UBERON:0003053 | 91.82 | gold quality |
| right testis | UBERON:0004534 | 88.39 | gold quality |
| left testis | UBERON:0004533 | 87.93 | gold quality |
| ileal mucosa | UBERON:0000331 | 87.08 | gold quality |
| testis | UBERON:0000473 | 85.56 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.36 | gold quality |
| stromal cell of endometrium | CL:0002255 | 85.32 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 83.46 | gold quality |
| ganglionic eminence | UBERON:0004023 | 83.30 | gold quality |
| metanephros cortex | UBERON:0010533 | 83.20 | gold quality |
| colonic mucosa | UBERON:0000317 | 79.48 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 77.82 | gold quality |
| rectum | UBERON:0001052 | 77.47 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 76.88 | gold quality |
| metanephros | UBERON:0000081 | 75.61 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 75.58 | gold quality |
| thyroid gland | UBERON:0002046 | 75.25 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 75.01 | gold quality |
| body of pancreas | UBERON:0001150 | 73.83 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 72.27 | gold quality |
| jejunal mucosa | UBERON:0000399 | 72.20 | gold quality |
| caudate nucleus | UBERON:0001873 | 72.20 | gold quality |
| left ovary | UBERON:0002119 | 72.18 | gold quality |
| cortex of kidney | UBERON:0001225 | 71.68 | gold quality |
| putamen | UBERON:0001874 | 71.28 | gold quality |
| nucleus accumbens | UBERON:0001882 | 70.32 | gold quality |
| duodenum | UBERON:0002114 | 70.09 | gold quality |
| adenohypophysis | UBERON:0002196 | 69.97 | gold quality |
| pituitary gland | UBERON:0000007 | 69.92 | gold quality |
| ovary | UBERON:0000992 | 69.90 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-125970 | yes | 23.60 |
| E-MTAB-9388 | yes | 11.95 |
| E-ANND-3 | yes | 8.18 |
| E-MTAB-8271 | yes | 6.62 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ESR1, GATA6, KLF4, KLF5, KLF6, SOX17, SOX7, SP1, SP3, YY1
miRNA regulators (miRDB)
48 targeting LAMA1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-4682 | 100.00 | 68.89 | 1258 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-202-3P | 99.84 | 71.41 | 1290 |
| HSA-MIR-4698 | 99.84 | 71.41 | 4303 |
| HSA-MIR-26A-5P | 99.78 | 73.52 | 2303 |
| HSA-MIR-26B-5P | 99.78 | 73.51 | 2305 |
| HSA-MIR-4517 | 99.76 | 69.19 | 1867 |
| HSA-MIR-8084 | 99.73 | 69.57 | 1760 |
| HSA-MIR-4465 | 99.71 | 72.56 | 2096 |
| HSA-MIR-5093 | 99.67 | 69.26 | 2291 |
| HSA-MIR-543 | 99.52 | 69.03 | 2595 |
| HSA-MIR-122B-5P | 99.46 | 70.81 | 1457 |
| HSA-MIR-377-3P | 99.37 | 70.18 | 1905 |
| HSA-MIR-145-3P | 99.33 | 67.66 | 764 |
| HSA-MIR-5589-3P | 99.29 | 68.30 | 1443 |
| HSA-MIR-3978 | 99.24 | 68.39 | 2201 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 37)
- Exposure of cryptic domains in the alpha 1-chain of laminin-1 by elastase stimulates macrophages urokinase and matrix metalloproteinase-9 expression. (PMID:11827968)
- Alpha 1 laminin was heavily over-expressed in Alzheimer disease frontal cortex, and localized in reactive astrocytes of the grey and white matter, and as punctate deposits in the senile placques of the Alzheimer brain tissue. (PMID:12111806)
- Laminins with alpha1, alpha4, and alpha5 chains are compared to determine laminin isoform-specific promotion of adhesion and migration of human bone marrow progenitor cells. (PMID:12393739)
- mRNA encoding laminin-alpha1, -beta1, and -gamma1 chains was expressed in 90% of endometriotic lesions. (PMID:12615822)
- adhesion to laminin-1 through alpha6-integrin represents a protective mechanism for melanocytes to withstand UVB damage (PMID:15885076)
- analysis of structure and activities reveal differences in laminin G-like domain interactions that should enable dissection of biological roles of different laminin ligands (PMID:17307732)
- analysis of how distinct acidic clusters and hydrophobic residues in the alternative splice domains X1 and X2 of alpha7 integrins define specificity for laminin isoforms (PMID:17618648)
- Real-time PCR showed that ETOH significantly altered the expression of genes involved in cell adhesion. There was an increase in the expression of alpha and beta Laminins 1, beta Integrins 3 and 5, Secreted phosphoprotein1 and Sarcoglycan epsilon. (PMID:18162078)
- Subepicardial localization of CD117-positive cells and expression of laminin-1 and alpha(6) integrin subunits may all correspond to the activation of regeneration involving an epithelial-mesenchymal transition in adult heart (PMID:18436868)
- The laminin and laminin gene expression was higher in the aganglionic segment than in the dilated segment, and the expression decreased stepwisely from the aganglionic segment to the normal segment. (PMID:18661771)
- laminin-111 (alpha(1), beta(1), gamma(1)), which is expressed during embryonic development but absent in normal or dystrophic skeletal muscle, increased alpha(7)-integrin expression in mouse and DMD patient myoblasts (PMID:19416897)
- These results identify a previously undescribed role of carbohydrate-dependent cell-basement membrane interaction in tumor suppression and its control by beta3GnT1 and LARGE. (PMID:19587235)
- Promoter -1030C/T polymorphism of LMNA is a possible genetic predisposition to arterial stiffness in the Japanese population (PMID:19672032)
- Abnormal distribution of laminin alpha1 and laminin alpha5 in glomerular basement membrane is correlated with GBM thickening and splitting in human Alport’s syndrome. (PMID:20019771)
- Laminin-derived peptide AG73 regulates migration, invasion, and protease activity of human oral squamous cell carcinoma cells through syndecan-1 and beta1 integrin. (PMID:20237901)
- The polymorphism of SNP rs2089760, located in the promoter region of LAMA1, may be associated with high myopia in the Chinese population. (PMID:21541277)
- c-Jun/AP-1 activity mediated by JNK, PI3K/Akt and ERK pathways is required for laminin-1-induced neurite outgrowth in human bone marrow mesenchymal stem cells. (PMID:21570970)
- Laminin-alpha1 LG4-5 domain binding to dystroglycan mediates muscle cell survival, growth, and the AP-1 and NF-kappaB transcription factors but also has adverse effects. (PMID:22159078)
- we report associations with the LAMA1 and HMG20A (not previously associated at genome-wide significance in Europeans) gene regions with type 2 diabetes risk (PMID:22693455)
- miR-9 negatively controls lamin A and progerin expression in neural cells. (PMID:22840390)
- Studies indicate that progenitor endothelial cells (ECs), endothelial colony-forming cells (ECFCs), deposit collagen IV, fibronectin, and laminin. (PMID:22919069)
- skin-processed peptides play role in wound healing and antimicrobial response (PMID:24458132)
- Identification of biallelic mutations in LAMA1 as the cause of cerebellar dysplasia with cysts in seven affected individuals. (PMID:25105227)
- Our results indicate that invasion of cervical cancer is accomplished by the remodeling of the interstitial stroma, which process includes decrease and partial replacement of fibronectin and collagens by a laminin-rich matrix (PMID:25885552)
- Novel PMCA3 missense mutation co-occurring with a heterozygous mutation in LAMA1 impaired cellular Ca2+ homeostasis in patients with Cerebellar Ataxia. (PMID:25953895)
- Studies of the hLM alpha-1N C49S mutant show that this mutation causes enhanced self-association behavior, which can explain the inability of laminin bearing this mutation to fulfill functional roles in vivo. (PMID:26215696)
- LAMA1 SNP rs2089760 plays an important role in the development of PM. (PMID:26862816)
- Sixteen novel LAMA1 variants were identified in fourteen families with Poretti-Boltshauser syndrome. The frameshift variant c.[2935delA] recurred in six unrelated families on a shared haplotype, suggesting a founder effect. (PMID:26932191)
- Taken together, these findings suggest that miR-202 may function as a novel tumor suppressor in ESCC by repressing cell proliferation and migration, and its biological effects may attribute the inhibition of LAMA1-mediated FAK-PI3K-Akt signaling. (PMID:27045085)
- LAMA1 deficiency can lead to alteration in cytoskeletal dynamics, which may invariably lead to alteration in dendrite growth and axonal formation. Patient-derived fibroblasts have impaired adhesion, reduced migration, abnormal morphology and increased apoptosis due to impaired activation of Cdc42, a member of the Rho family of GTPases that is involved in cytoskeletal dynamics. (PMID:27095636)
- Laminins are involved in genetic and acquired bullous dermatoses, and collagenoses. (PMID:27464450)
- We report here a severe defect of neuromuscular transmission in a consanguineous patient with a homozygous variant in the laminin alpha-5 subunit gene (LAMA5). The variant c.8046C>T (p.Arg2659Trp) is rare and has a predicted deleterious effect. The affected individual, who also carries a rare homozygous sequence variant in LAMA1, had muscle weakness, myopia, and facial tics (PMID:28544784)
- intrinsic interaction between AG73 in the tumor environment and the proteoglycan receptors Sdcs on breast cancer cells in supporting tumor cell adhesion and invasion through filopodia, is an important step in cancer metastasis. (PMID:31183318)
- Organisation of extracellular matrix proteins laminin and agrin in pericapillary basal laminae in mouse brain. (PMID:32072250)
- Spermatogonia Loss Correlates with LAMA 1 Expression in Human Prepubertal Testes Stored for Fertility Preservation. (PMID:33513766)
- Circular RNA hsa_circ_0000277 sequesters miR-4766-5p to upregulate LAMA1 and promote esophageal carcinoma progression. (PMID:34226522)
- Variability of retinopathy consequent upon novel mutations in LAMA1. (PMID:35616092)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lama1 | ENSDARG00000102277 |
| mus_musculus | Lama1 | ENSMUSG00000032796 |
| rattus_norvegicus | Lama1 | ENSRNOG00000017237 |
Paralogs (27): USH2A (ENSG00000042781), LAMC3 (ENSG00000050555), LAMA3 (ENSG00000053747), LAMC2 (ENSG00000058085), NTN1 (ENSG00000065320), NTN4 (ENSG00000074527), ATRN (ENSG00000088812), LAMB4 (ENSG00000091128), LAMB1 (ENSG00000091136), MEGF8 (ENSG00000105429), MEGF9 (ENSG00000106780), ATRNL1 (ENSG00000107518), LAMA4 (ENSG00000112769), LAMA5 (ENSG00000130702), LAMC1 (ENSG00000135862), NTN5 (ENSG00000142233), HSPG2 (ENSG00000142798), TMEFF2 (ENSG00000144339), NTN3 (ENSG00000162068), NTNG1 (ENSG00000162631), EGFLAM (ENSG00000164318), LAMB2 (ENSG00000172037), AGRN (ENSG00000188157), NTNG2 (ENSG00000196358), LAMA2 (ENSG00000196569), LAMB3 (ENSG00000196878), TMEFF1 (ENSG00000241697)
Protein
Protein identifiers
Laminin subunit alpha-1 — P25391 (reviewed: P25391)
Alternative names: Laminin A chain, Laminin-1 subunit alpha, Laminin-3 subunit alpha, S-laminin subunit alpha
All UniProt accessions (1): P25391
UniProt curated annotations — full annotation on UniProt →
Function. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. As a ligand for alpha-dystroglycan, it is involved in a number of processes including epithelium branching morphogenesis, down-regulation of apoptotic signals in muscle via the activation of PI3K/AKT signaling, and activation of RAC1 signaling. As a subunit of laminin-1 (also known as laminin-111 or EHS laminin), it is involved in the stimulation of agrin-induced receptor clustering through a MuSK-independent pathway.
Subunit / interactions. Laminin is a complex glycoprotein, consisting of three different polypeptide chains (alpha, beta, gamma), which are bound to each other by disulfide bonds into a cross-shaped molecule comprising one long and three short arms with globules at each end. Alpha-1 is a subunit of laminin-1 (laminin-111 or EHS laminin) and laminin-3 (laminin-121 or S-laminin). Interacts with alpha-dystroglycan; the interaction is required for a number of processes including epithelium branching morphogenesis, and down-regulation of apoptotic signals in muscle via the activation of PI3K/AKT signaling.
Subcellular location. Secreted. Extracellular space. Extracellular matrix. Basement membrane.
Post-translational modifications. Tyrosine phosphorylated by PKDCC/VLK.
Disease relevance. Poretti-Boltshauser syndrome (PTBHS) [MIM:615960] An autosomal recessive disorder characterized by cerebellar dysplasia, cerebellar vermis atrophy, cerebellar cysts in most patients, high myopia, variable retinal dystrophy, and eye movement abnormalities including strabismus, ocular apraxia, nystagmus. Affected individuals have ataxia, delayed motor development, language impairment, and intellectual disability with variable severity. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The alpha-helical domains I and II are thought to interact with other laminin chains to form a coiled coil structure. Domains VI, IV and G are globular.
RefSeq proteins (1): NP_005550* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000034 | Laminin_IV | Domain |
| IPR000742 | EGF | Domain |
| IPR001791 | Laminin_G | Domain |
| IPR002049 | LE_dom | Domain |
| IPR008211 | Laminin_N | Domain |
| IPR009254 | Laminin_aI | Domain |
| IPR010307 | Laminin_dom_II | Domain |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR050440 | Laminin/Netrin_ECM | Family |
| IPR056863 | LMN_ATRN_NET-like_EGF | Domain |
Pfam: PF00052, PF00053, PF00054, PF00055, PF06008, PF06009, PF24973
UniProt features (131 total): disulfide bond 67, domain 27, sequence variant 13, sequence conflict 13, glycosylation site 6, signal peptide 1, chain 1, region of interest 1, coiled-coil region 1, short sequence motif 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
No AlphaFold model available for P25391 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (67): 2271–2297, 2457–2481, 2646–2673, 2860–2885, 3039–3070, 270–279, 272–290, 292–301, 304–324, 327–336, 329–361, 364–373, 376–394, 397–409, 399–427, 429–438, 441–451, 454–467, 456–471, 473–482 …
Glycosylation sites (6): 665, 1579, 1689, 1717, 2047, 2243
Function
Pathways and Gene Ontology
Reactome pathways
16 pathways
| ID | Pathway |
|---|---|
| R-HSA-3000157 | Laminin interactions |
| R-HSA-3000171 | Non-integrin membrane-ECM interactions |
| R-HSA-3000178 | ECM proteoglycans |
| R-HSA-373760 | L1CAM interactions |
| R-HSA-8874081 | MET activates PTK2 signaling |
| R-HSA-9638630 | Attachment of bacteria to epithelial cells |
| R-HSA-9913351 | Formation of the dystrophin-glycoprotein complex (DGC) |
| R-HSA-9925563 | Developmental Lineage of Pancreatic Ductal Cells |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-1474244 | Extracellular matrix organization |
| R-HSA-162582 | Signal Transduction |
| R-HSA-422475 | Axon guidance |
| R-HSA-6806834 | Signaling by MET |
| R-HSA-8875878 | MET promotes cell motility |
| R-HSA-9006934 | Signaling by Receptor Tyrosine Kinases |
| R-HSA-9675108 | Nervous system development |
MSigDB gene sets: 306 (showing top):
GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_UP, GOBP_NEUROMUSCULAR_JUNCTION_DEVELOPMENT, GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, CREL_01, MYAATNNNNNNNGGC_UNKNOWN, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_ESTABLISHMENT_OR_MAINTENANCE_OF_MONOPOLAR_CELL_POLARITY, GOBP_GLAND_MORPHOGENESIS, GOBP_ESTABLISHMENT_OR_MAINTENANCE_OF_CELL_POLARITY, GOBP_SALIVARY_GLAND_DEVELOPMENT, GOBP_ESTABLISHMENT_OF_EPITHELIAL_CELL_POLARITY, GOBP_EPITHELIAL_TUBE_BRANCHING_INVOLVED_IN_LUNG_MORPHOGENESIS, GOBP_POSITIVE_REGULATION_OF_MUSCLE_CELL_DIFFERENTIATION, SP3_Q3, ATACCTC_MIR202
GO Biological Process (20): morphogenesis of an epithelial sheet (GO:0002011), cell adhesion (GO:0007155), cell surface receptor signaling pathway (GO:0007166), negative regulation of muscle cell apoptotic process (GO:0010656), regulation of cell migration (GO:0030334), neuron projection development (GO:0031175), positive regulation of Rac protein signal transduction (GO:0035022), establishment of epithelial cell apical/basal polarity (GO:0045198), positive regulation of cell adhesion (GO:0045785), regulation of embryonic development (GO:0045995), positive regulation of muscle cell differentiation (GO:0051149), positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051897), epithelial tube branching involved in lung morphogenesis (GO:0060441), branching involved in salivary gland morphogenesis (GO:0060445), retinal blood vessel morphogenesis (GO:0061304), regulation of basement membrane organization (GO:0110011), positive regulation of integrin-mediated signaling pathway (GO:2001046), tissue development (GO:0009888), regulation of cell adhesion (GO:0030155), retina development in camera-type eye (GO:0060041)
GO Molecular Function (5): extracellular matrix structural constituent (GO:0005201), glycosphingolipid binding (GO:0043208), receptor ligand activity (GO:0048018), signaling receptor binding (GO:0005102), protein binding (GO:0005515)
GO Cellular Component (10): extracellular region (GO:0005576), basement membrane (GO:0005604), laminin-111 trimer (GO:0005606), laminin-121 trimer (GO:0005608), obsolete extracellular space (GO:0005615), cell-cell junction (GO:0005911), membrane (GO:0016020), extracellular matrix (GO:0031012), protein complex involved in cell-matrix adhesion (GO:0098637), laminin trimer (GO:0043256)
Reactome top-level categories
Rollup of top-11 pathways:
| Category | Pathways |
|---|---|
| Extracellular matrix organization | 3 |
| Axon guidance | 1 |
| MET promotes cell motility | 1 |
| Biofilm formation | 1 |
| Non-integrin membrane-ECM interactions | 1 |
| Developmental Cell Lineages of the Exocrine Pancreas | 1 |
| Nervous system development | 1 |
| Signaling by Receptor Tyrosine Kinases | 1 |
| Signaling by MET | 1 |
| Signal Transduction | 1 |
| Developmental Biology | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| signal transduction | 2 |
| cell adhesion | 2 |
| anatomical structure development | 2 |
| extracellular matrix | 2 |
| cellular anatomical structure | 2 |
| laminin trimer | 2 |
| morphogenesis of an epithelium | 1 |
| cellular process | 1 |
| muscle cell apoptotic process | 1 |
| regulation of muscle cell apoptotic process | 1 |
| negative regulation of apoptotic process | 1 |
| cell migration | 1 |
| regulation of cell motility | 1 |
| neuron development | 1 |
| plasma membrane bounded cell projection organization | 1 |
| Rac protein signal transduction | 1 |
| regulation of Rac protein signal transduction | 1 |
| positive regulation of small GTPase mediated signal transduction | 1 |
| polarized epithelial cell differentiation | 1 |
| establishment of apical/basal cell polarity | 1 |
| establishment or maintenance of epithelial cell apical/basal polarity | 1 |
| establishment of epithelial cell polarity | 1 |
| regulation of cell adhesion | 1 |
| positive regulation of cellular process | 1 |
| embryo development | 1 |
| regulation of multicellular organismal development | 1 |
| muscle cell differentiation | 1 |
| positive regulation of cell differentiation | 1 |
| regulation of muscle cell differentiation | 1 |
| phosphatidylinositol 3-kinase/protein kinase B signal transduction | 1 |
| regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction | 1 |
| positive regulation of intracellular signal transduction | 1 |
| branching morphogenesis of an epithelial tube | 1 |
| lung morphogenesis | 1 |
| salivary gland morphogenesis | 1 |
| morphogenesis of a branching epithelium | 1 |
| blood vessel morphogenesis | 1 |
| retina vasculature morphogenesis in camera-type eye | 1 |
| basement membrane organization | 1 |
| regulation of extracellular matrix organization | 1 |
Protein interactions and networks
STRING
1262 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LAMA1 | LAMB1 | P07942 | 827 |
| LAMA1 | NLGN2 | Q8NFZ4 | 719 |
| LAMA1 | LAMC1 | P11047 | 696 |
| LAMA1 | CLEC3A | O75596 | 669 |
| LAMA1 | COL4A2 | P08572 | 640 |
| LAMA1 | NID1 | P14543 | 630 |
| LAMA1 | ITGA6 | P23229 | 627 |
| LAMA1 | COL6A1 | P12109 | 618 |
| LAMA1 | ITGA7 | Q13683 | 600 |
| LAMA1 | FAT3 | Q8TDW7 | 592 |
| LAMA1 | ITGA2 | P17301 | 580 |
| LAMA1 | NID2 | Q14112 | 568 |
| LAMA1 | COL11A1 | P12107 | 560 |
| LAMA1 | SHBG | P04278 | 549 |
| LAMA1 | ITGB1 | P05556 | 549 |
IntAct
68 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ARRDC1 | WWP2 | psi-mi:“MI:0914”(association) | 0.850 |
| KSR2 | POLR3A | psi-mi:“MI:0914”(association) | 0.530 |
| OS9 | AGRN | psi-mi:“MI:0914”(association) | 0.530 |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| CRP | QSOX1 | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS3 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS1 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| p4c | LAMA1 | psi-mi:“MI:0915”(physical association) | 0.520 |
| Tmpo | LAMA1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| LAMA1 | H2BC9 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Prkci | LLGL2 | psi-mi:“MI:0914”(association) | 0.350 |
| Kctd5 | psi-mi:“MI:0914”(association) | 0.350 | |
| Tube1 | psi-mi:“MI:0914”(association) | 0.350 | |
| Bag2 | psi-mi:“MI:0914”(association) | 0.350 | |
| Tubg1 | RTL8C | psi-mi:“MI:0914”(association) | 0.350 |
| Get4 | BAG6 | psi-mi:“MI:0914”(association) | 0.350 |
| Dctn4 | DCTN6 | psi-mi:“MI:0914”(association) | 0.350 |
| STRN3 | STK24 | psi-mi:“MI:0914”(association) | 0.350 |
| TUBG1 | DPM1 | psi-mi:“MI:0914”(association) | 0.350 |
| Myh3 | RPL10 | psi-mi:“MI:0914”(association) | 0.350 |
| Immt | GOSR1 | psi-mi:“MI:0914”(association) | 0.350 |
| TOMM40 | NOS1AP | psi-mi:“MI:0914”(association) | 0.350 |
| Trim32 | NSF | psi-mi:“MI:0914”(association) | 0.350 |
| Prmt6 | LAMA1 | psi-mi:“MI:0914”(association) | 0.350 |
| NES | RPL10 | psi-mi:“MI:0914”(association) | 0.350 |
| ATL2 | ACRBP | psi-mi:“MI:0914”(association) | 0.350 |
| CBX4 | SDC2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (75): LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS), LAMA1 (Affinity Capture-MS)
ESM2 similar proteins: A0A6I8RMG7, A0JP86, A4D0S4, O54890, O70309, P02468, P02469, P05106, P0CY46, P11046, P11047, P13387, P13388, P15215, P15800, P18084, P18563, P18564, P19137, P24043, P25391, P35555, P55268, P80747, P98133, Q07441, Q18823, Q1LVF0, Q1RPR6, Q2KIT5, Q5RB89, Q60675, Q61220, Q61292, Q61526, Q61554, Q61555, Q62918, Q6AYF4, Q6UXH1
Diamond homologs: A0JP86, A2ASQ1, G5ECE3, O00468, O00634, O09118, O15230, O75445, O75882, O95631, P02468, P11047, P15215, P19137, P24043, P25304, P25391, P31696, P34710, P97927, Q00174, Q01635, Q13751, Q13753, Q16363, Q16787, Q18823, Q19981, Q1LVF0, Q24567, Q24568, Q27262, Q2HXW4, Q2QI47, Q5RB89, Q5VV63, Q60675, Q61001, Q61087, Q61092
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| LAMA1 | “form complex” | Laminin-1 | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1746 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 81 |
| Likely pathogenic | 42 |
| Uncertain significance | 876 |
| Likely benign | 512 |
| Benign | 101 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1027444 | NM_005559.4(LAMA1):c.1404_1405del (p.Gly469fs) | Pathogenic |
| 1075086 | NM_005559.4(LAMA1):c.1972C>T (p.Gln658Ter) | Pathogenic |
| 1075979 | NM_005559.4(LAMA1):c.4676_4679del (p.Glu1559fs) | Pathogenic |
| 1098868 | NM_005559.4(LAMA1):c.494del (p.Ile165fs) | Pathogenic |
| 1098869 | NM_005559.4(LAMA1):c.3053del (p.Pro1018fs) | Pathogenic |
| 1098918 | NM_005559.4(LAMA1):c.2962del (p.Tyr988fs) | Pathogenic |
| 1098919 | NM_005559.4(LAMA1):c.1281C>A (p.Cys427Ter) | Pathogenic |
| 1284915 | NM_005559.4(LAMA1):c.842G>A (p.Trp281Ter) | Pathogenic |
| 1323157 | NM_005559.4(LAMA1):c.2480G>A (p.Trp827Ter) | Pathogenic |
| 1323159 | NM_005559.4(LAMA1):c.6489+1G>C | Pathogenic |
| 1351928 | NM_005559.4(LAMA1):c.6517C>T (p.Arg2173Ter) | Pathogenic |
| 1410367 | NM_005559.4(LAMA1):c.6861dup (p.Ile2288fs) | Pathogenic |
| 144107 | NM_005559.4(LAMA1):c.588+2T>G | Pathogenic |
| 144108 | NM_005559.4(LAMA1):c.7965-15_7965-3del | Pathogenic |
| 144109 | NM_005559.4(LAMA1):c.2986del (p.Thr996fs) | Pathogenic |
| 144110 | NM_005559.4(LAMA1):c.2816_2817del (p.Tyr939fs) | Pathogenic |
| 144111 | NM_005559.4(LAMA1):c.555T>G (p.Tyr185Ter) | Pathogenic |
| 1457019 | NM_005559.4(LAMA1):c.7946dup (p.Asn2649fs) | Pathogenic |
| 1675304 | NM_005559.4(LAMA1):c.3919C>T (p.Arg1307Ter) | Pathogenic |
| 1708460 | GRCh37/hg19 18p11.31-11.23(chr18:6939845-8087455)x3 | Pathogenic |
| 1709400 | NM_005559.4(LAMA1):c.4807-2A>G | Pathogenic |
| 1804139 | NM_005559.4(LAMA1):c.2932_2933delinsG (p.Lys978fs) | Pathogenic |
| 1805047 | NM_005559.4(LAMA1):c.6333dup (p.Gln2112fs) | Pathogenic |
| 1897152 | NM_005559.4(LAMA1):c.8777del (p.Asn2926fs) | Pathogenic |
| 1918245 | NM_005559.4(LAMA1):c.448del (p.Gln150fs) | Pathogenic |
| 1947866 | NM_005559.4(LAMA1):c.2481G>A (p.Trp827Ter) | Pathogenic |
| 2007972 | NM_005559.4(LAMA1):c.3042T>A (p.Cys1014Ter) | Pathogenic |
| 2015084 | NM_005559.4(LAMA1):c.3667C>T (p.Gln1223Ter) | Pathogenic |
| 2015122 | NM_005559.4(LAMA1):c.6982C>T (p.Gln2328Ter) | Pathogenic |
| 2019646 | NM_005559.4(LAMA1):c.7628_7632del (p.Pro2543fs) | Pathogenic |
SpliceAI
9908 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 18:6942235:ACCAG:A | acceptor_gain | 1.0000 |
| 18:6942236:CCAG:C | acceptor_gain | 1.0000 |
| 18:6942236:CCAGC:C | acceptor_gain | 1.0000 |
| 18:6942237:CAG:C | acceptor_gain | 1.0000 |
| 18:6942237:CAGC:C | acceptor_gain | 1.0000 |
| 18:6942238:AG:A | acceptor_gain | 1.0000 |
| 18:6942240:C:CC | acceptor_gain | 1.0000 |
| 18:6942245:C:CT | acceptor_gain | 1.0000 |
| 18:6942246:A:T | acceptor_gain | 1.0000 |
| 18:6943174:ACAT:A | donor_loss | 1.0000 |
| 18:6943178:A:AC | donor_gain | 1.0000 |
| 18:6943178:ACC:A | donor_loss | 1.0000 |
| 18:6943179:C:CC | donor_gain | 1.0000 |
| 18:6947158:CCCA:C | donor_loss | 1.0000 |
| 18:6947159:CCAC:C | donor_loss | 1.0000 |
| 18:6947160:CA:C | donor_loss | 1.0000 |
| 18:6947161:A:C | donor_loss | 1.0000 |
| 18:6947162:C:CG | donor_loss | 1.0000 |
| 18:6947292:TTTGA:T | acceptor_gain | 1.0000 |
| 18:6947294:TGA:T | acceptor_gain | 1.0000 |
| 18:6947297:C:CC | acceptor_gain | 1.0000 |
| 18:6948422:T:TA | donor_gain | 1.0000 |
| 18:6948441:T:TA | donor_gain | 1.0000 |
| 18:6949095:GCTTA:G | donor_loss | 1.0000 |
| 18:6949096:CTTA:C | donor_loss | 1.0000 |
| 18:6949097:TTACA:T | donor_loss | 1.0000 |
| 18:6949098:TA:T | donor_loss | 1.0000 |
| 18:6949099:A:AC | donor_gain | 1.0000 |
| 18:6949099:A:C | donor_loss | 1.0000 |
| 18:6949100:C:CA | donor_gain | 1.0000 |
AlphaMissense
20229 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 18:6965302:C:G | R2394P | 0.999 |
| 18:7050736:G:C | C182W | 0.999 |
| 18:7050737:C:G | C182S | 0.999 |
| 18:7050738:A:G | C182R | 0.999 |
| 18:7050738:A:T | C182S | 0.999 |
| 18:7050879:A:G | W135R | 0.999 |
| 18:7050879:A:T | W135R | 0.999 |
| 18:7080035:A:C | S95R | 0.999 |
| 18:7080035:A:T | S95R | 0.999 |
| 18:7080037:T:G | S95R | 0.999 |
| 18:7080041:C:A | W93C | 0.999 |
| 18:7080041:C:G | W93C | 0.999 |
| 18:7080043:A:G | W93R | 0.999 |
| 18:7080043:A:T | W93R | 0.999 |
| 18:7080370:C:G | C50S | 0.999 |
| 18:7080370:C:T | C50Y | 0.999 |
| 18:7080371:A:G | C50R | 0.999 |
| 18:7080371:A:T | C50S | 0.999 |
| 18:6971901:C:A | W2285C | 0.998 |
| 18:6971901:C:G | W2285C | 0.998 |
| 18:6977747:C:G | A2109P | 0.998 |
| 18:7049172:C:G | R225P | 0.998 |
| 18:7050737:C:T | C182Y | 0.998 |
| 18:7050806:C:G | C159S | 0.998 |
| 18:7050807:A:G | C159R | 0.998 |
| 18:7050807:A:T | C159S | 0.998 |
| 18:7050837:A:G | W149R | 0.998 |
| 18:7050837:A:T | W149R | 0.998 |
| 18:7080313:C:G | C69S | 0.998 |
| 18:7080314:A:T | C69S | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000008775 (18:6972417 A>G), RS1000046772 (18:7045032 A>G), RS1000047467 (18:7007520 T>C), RS1000078969 (18:7113083 G>A,C), RS1000091249 (18:6997628 G>A,C,T), RS1000093070 (18:6987307 C>G), RS1000098743 (18:7045269 G>A), RS1000126833 (18:6967146 C>G), RS1000143719 (18:7018099 G>C), RS1000160537 (18:7078312 G>A,T), RS1000175316 (18:7029730 A>G), RS1000208806 (18:7039106 A>G), RS1000214968 (18:7078413 G>A,T), RS1000225157 (18:7107825 T>A,C,G), RS1000239902 (18:7102096 T>C)
Disease associations
OMIM: gene MIM:150320 | disease phenotypes: MIM:615960
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| ataxia - intellectual disability - oculomotor apraxia - cerebellar cysts syndrome | Definitive | Autosomal recessive |
Mondo (5): ataxia - intellectual disability - oculomotor apraxia - cerebellar cysts syndrome (MONDO:0014419), inherited retinal dystrophy (MONDO:0019118), optic atrophy (MONDO:0003608), retinal disorder (MONDO:0005283), intellectual disability (MONDO:0001071)
Orphanet (3): Ataxia-intellectual disability-oculomotor apraxia-cerebellar cysts syndrome (Orphanet:370022), OBSOLETE: Inherited retinal disorder (Orphanet:71862), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
30 total (30 of 30 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000486 | Strabismus |
| HP:0000540 | Hypermetropia |
| HP:0000545 | Myopia |
| HP:0000556 | Retinal dystrophy |
| HP:0000639 | Nystagmus |
| HP:0000646 | Amblyopia |
| HP:0000657 | Oculomotor apraxia |
| HP:0000750 | Delayed speech and language development |
| HP:0001105 | Retinal atrophy |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001263 | Global developmental delay |
| HP:0001270 | Motor delay |
| HP:0001290 | Generalized hypotonia |
| HP:0001320 | Cerebellar vermis hypoplasia |
| HP:0002198 | Dilated fourth ventricle |
| HP:0002282 | Gray matter heterotopia |
| HP:0002342 | Moderate intellectual disability |
| HP:0002350 | Cerebellar cyst |
| HP:0002363 | Abnormal brainstem morphology |
| HP:0002518 | Abnormal periventricular white matter morphology |
| HP:0002599 | Head titubation |
| HP:0003236 | Elevated circulating creatine kinase concentration |
| HP:0003828 | Variable expressivity |
| HP:0007033 | Cerebellar dysplasia |
| HP:0007068 | Inferior cerebellar vermis hypoplasia |
| HP:0011933 | Elongated superior cerebellar peduncle |
| HP:0030329 | Retinal thinning on OCT |
| HP:0100543 | Cognitive impairment |
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001550_2 | Type 2 diabetes | 8.000000e-09 |
| GCST001591_15 | Response to citalopram treatment | 4.000000e-06 |
| GCST001591_3 | Response to citalopram treatment | 5.000000e-07 |
| GCST006867_80 | Type 2 diabetes | 2.000000e-08 |
| GCST009028_27 | Adverse response to drug | 8.000000e-07 |
| GCST009379_216 | Type 2 diabetes | 2.000000e-08 |
| GCST010118_66 | Type 2 diabetes | 9.000000e-10 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009658 | adverse effect |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D009896 | Optic Atrophy | C10.292.700.225; C11.640.451 |
| D012164 | Retinal Diseases | C11.768 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2364187 (PROTEIN COMPLEX GROUP), CHEMBL4523594 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
75 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases methylation, affects cotreatment, increases abundance, increases expression, decreases expression | 6 |
| bisphenol A | increases expression, affects cotreatment, decreases expression | 4 |
| Cadmium Chloride | decreases expression, increases expression | 4 |
| Tobacco Smoke Pollution | affects expression, increases expression | 3 |
| Zoledronic Acid | decreases expression | 2 |
| Arsenic | increases abundance, increases expression, affects cotreatment, decreases expression | 2 |
| Benzo(a)pyrene | increases expression, increases methylation | 2 |
| Tretinoin | decreases expression, increases expression | 2 |
| bisphenol F | affects cotreatment, decreases expression | 1 |
| bufotalin | increases expression | 1 |
| propionaldehyde | increases expression | 1 |
| 6-hydroxy-5-((p- sulfophenyl)azo)-2-naphthalenesulfonic acid disodium salt | affects cotreatment, increases expression | 1 |
| sodium arsenate | increases abundance, increases expression | 1 |
| arsenite | decreases expression | 1 |
| sulforaphane | increases expression | 1 |
| 11-nor-delta(9)-tetrahydrocannabinol-9-carboxylic acid | affects methylation, increases abundance | 1 |
| butyraldehyde | increases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| Huang Qi | decreases reaction, increases expression, affects cotreatment | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| 2-amino-3,8-dimethylimidazo(4,5-f)quinoxaline | increases expression | 1 |
| lei gong teng | affects binding | 1 |
| pentanal | increases expression | 1 |
| dinophysistoxin 1 | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Coptidis rhizoma extract | affects cotreatment, decreases reaction, increases expression | 1 |
| azaspiracid | decreases expression | 1 |
| abrine | increases expression | 1 |
| Centella asiatica extract | increases expression, affects cotreatment, decreases reaction | 1 |
| Sugars | affects cotreatment, decreases reaction, increases expression | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4388731 | Binding | Binding affinity to biotin-labeled human recombinant laminin-1 at 10 ug/ml in pH 7.4 Tris buffer by fluorescence microarray method | Synthetic glycopeptides reveal specific binding pattern and conformational change at O-mannosylated position of α-dystroglycan by POMGnT1 catalyzed GlcNAc modification. — Bioorg Med Chem |
Clinical trials (associated diseases)
272 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01955135 | PHASE4 | COMPLETED | Anesthesia for Retinopathy of Prematurity |
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT04224207 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT07082855 | PHASE3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT03763227 | PHASE2 | COMPLETED | Intravitreal Ranibizumab (Lucentis®) in the Treatment of Non-leaking Macular Cysts in Retinal Dystrophy |
| NCT04068207 | PHASE2 | COMPLETED | Minocycline Treatment in Retinitis Pigmentosa |
| NCT04945772 | PHASE2 | COMPLETED | Efficacy and Safety of MCO-010 Optogenetic Therapy in Adults With Retinitis Pigmentosa [RESTORE] |
| NCT01373476 | PHASE2 | COMPLETED | Multicentre, Randomized, Controlled Trial of Qideng Mingmu Capsule in The Treatment of Diabetic Retinopathy |
| NCT01793090 | PHASE2 | COMPLETED | EPI-743 in Cobalamin C Defect: Effects on Visual and Neurological Impairment |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT05902962 | PHASE1 | COMPLETED | SAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects |
| NCT06319872 | PHASE1 | RECRUITING | The Effects of Disulfiram (Antabuse®) on Visual Acuity in Patients With Retinal Degeneration |
| NCT06455826 | PHASE1 | COMPLETED | MAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects (Wallaby) |
| NCT01064505 | PHASE1 | COMPLETED | Safety Study of a Single IVT Injection of QPI-1007 in Chronic Optic Nerve Atrophy and Recent Onset NAION Patients |
| NCT05147701 | PHASE1 | RECRUITING | Safety of Cultured Allogeneic Adult Umbilical Cord Derived Mesenchymal Stem Cells for NAION |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT04855045 | PHASE2/PHASE3 | UNKNOWN | An Open-label, Dose Escalation and Double-masked, Randomized, Controlled Trial Evaluating Safety and Tolerability of Sepofarsen in Children (<8 Years of Age) With LCA10 Caused by Mutations in the CEP290 Gene. |
| NCT03872479 | PHASE1/PHASE2 | UNKNOWN | Single Ascending Dose Study in Participants With LCA10 |
| NCT04123626 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | A Study to Evaluate the Safety and Tolerability of QR-1123 in Subjects With Autosomal Dominant Retinitis Pigmentosa Due to the P23H Mutation in the RHO Gene |
| NCT04545736 | PHASE1/PHASE2 | RECRUITING | Oral Metformin for Treatment of ABCA4 Retinopathy |
| NCT06212297 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Fellow-eye Study (FE) of LX101 in Subjects With Inherited Retinal Dystrophy |
| NCT06852963 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | A Repeat-Dose, Open-Label, Two Arm Safety and Efficacy Study of Two Doses of VP-001 Administered Intravitreally in Participants With Confirmed PRPF31 Mutation-Associated Retinal Dystrophy, Including Participants Previously Treated With VP001 |
| NCT07177196 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Personalized Antisense Oligonucleotide Therapy for a Single Participant With PRPH2 Mutation Associated With Retinal Dystrophy |
| NCT07063030 | EARLY_PHASE1 | RECRUITING | A Study of LX107 Gene Therapy in AIPL1-IRD Patients |
| NCT01546181 | Not specified | COMPLETED | Retinal Imaging by Adaptive Optics in Healthy Eyes and During Retinal and General Diseases |
| NCT01876147 | Not specified | COMPLETED | Visual and Functional Assessment in Low Vision Patients |
| NCT01920867 | Not specified | UNKNOWN | Stem Cell Ophthalmology Treatment Study |
| NCT02014389 | Not specified | RECRUITING | Evaluation of Objective Perimetry Using Chromatic Multifocal Pupillometer |
| NCT02983305 | Not specified | COMPLETED | Optical Head-Mounted Display Technology for Low Vision Rehabilitation |
Related Atlas pages
- Associated diseases: ataxia - intellectual disability - oculomotor apraxia - cerebellar cysts syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): ataxia - intellectual disability - oculomotor apraxia - cerebellar cysts syndrome