LAMA3
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Also known as nicein-150kDakalinin-165kDaBM600-150kDaepiligrin
Summary
LAMA3 (laminin subunit alpha 3, HGNC:6483) is a protein-coding gene on chromosome 18q11.2, encoding Laminin subunit alpha-3 (Q16787). Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
The protein encoded by this gene belongs to the laminin family of secreted molecules. Laminins are heterotrimeric molecules that consist of alpha, beta, and gamma subunits that assemble through a coiled-coil domain. Laminins are essential for formation and function of the basement membrane and have additional functions in regulating cell migration and mechanical signal transduction. This gene encodes an alpha subunit and is responsive to several epithelial-mesenchymal regulators including keratinocyte growth factor, epidermal growth factor and insulin-like growth factor. Mutations in this gene have been identified as the cause of Herlitz type junctional epidermolysis bullosa and laryngoonychocutaneous syndrome. Alternative splicing and alternative promoter usage result in multiple transcript variants.
Source: NCBI Gene 3909 — RefSeq curated summary.
At a glance
- Gene–disease (curated): junctional epidermolysis bullosa (Definitive, GenCC) — +6 more curated relationships
- Clinical variants (ClinVar): 2,289 total — 126 pathogenic, 134 likely-pathogenic
- Phenotypes (HPO): 98
- Druggable target: yes
- MANE Select transcript:
NM_198129
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6483 |
| Approved symbol | LAMA3 |
| Name | laminin subunit alpha 3 |
| Location | 18q11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | nicein-150kDa, kalinin-165kDa, BM600-150kDa, epiligrin |
| Ensembl gene | ENSG00000053747 |
| Ensembl biotype | protein_coding |
| OMIM | 600805 |
| Entrez | 3909 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 10 protein_coding, 3 retained_intron, 1 non_stop_decay, 1 protein_coding_CDS_not_defined
ENST00000269217, ENST00000313654, ENST00000399516, ENST00000585600, ENST00000586709, ENST00000586751, ENST00000587184, ENST00000588004, ENST00000588164, ENST00000588770, ENST00000590104, ENST00000591749, ENST00000592442, ENST00000592519, ENST00000649721
RefSeq mRNA: 4 — MANE Select: NM_198129
NM_000227, NM_001127717, NM_001127718, NM_198129
CCDS: CCDS11880, CCDS42419, CCDS45838, CCDS59307
Canonical transcript exons
ENST00000313654 — 75 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000915302 | 23750918 | 23751088 |
| ENSE00000915303 | 23753721 | 23753812 |
| ENSE00000948608 | 23881936 | 23882045 |
| ENSE00000948613 | 23876294 | 23876407 |
| ENSE00000948659 | 23867834 | 23867917 |
| ENSE00001109664 | 23839785 | 23839929 |
| ENSE00001109665 | 23814403 | 23814502 |
| ENSE00001109667 | 23858689 | 23858829 |
| ENSE00001109668 | 23826702 | 23826799 |
| ENSE00001109669 | 23763405 | 23763523 |
| ENSE00001109671 | 23773497 | 23773587 |
| ENSE00001109673 | 23749428 | 23749546 |
| ENSE00001109674 | 23815468 | 23815573 |
| ENSE00001109676 | 23819841 | 23819997 |
| ENSE00001109677 | 23810366 | 23810503 |
| ENSE00001109679 | 23815188 | 23815240 |
| ENSE00001109682 | 23777557 | 23777619 |
| ENSE00001109683 | 23822252 | 23822375 |
| ENSE00001109685 | 23816388 | 23816487 |
| ENSE00001109686 | 23827314 | 23827467 |
| ENSE00001109688 | 23824423 | 23824565 |
| ENSE00001109689 | 23845009 | 23845124 |
| ENSE00001109692 | 23847464 | 23847668 |
| ENSE00001109693 | 23842395 | 23842521 |
| ENSE00001109695 | 23713920 | 23714072 |
| ENSE00001109697 | 23758396 | 23758511 |
| ENSE00001109699 | 23857844 | 23857988 |
| ENSE00001109701 | 23747943 | 23748060 |
| ENSE00001109702 | 23838781 | 23838878 |
| ENSE00001109703 | 23784023 | 23784157 |
| ENSE00001109704 | 23775792 | 23775923 |
| ENSE00001109709 | 23813057 | 23813103 |
| ENSE00001109711 | 23842611 | 23842750 |
| ENSE00001109767 | 23894907 | 23895058 |
| ENSE00001109770 | 23894298 | 23894348 |
| ENSE00001136467 | 23884773 | 23884853 |
| ENSE00001146014 | 23871431 | 23871661 |
| ENSE00001146020 | 23864785 | 23864883 |
| ENSE00001179054 | 23954503 | 23955066 |
| ENSE00001222103 | 23836981 | 23837089 |
| ENSE00001413554 | 23890011 | 23890117 |
| ENSE00001426077 | 23846297 | 23846508 |
| ENSE00002712166 | 23861646 | 23861807 |
| ENSE00002819677 | 23689453 | 23689977 |
| ENSE00003463945 | 23898954 | 23899065 |
| ENSE00003499000 | 23899288 | 23899455 |
| ENSE00003508028 | 23912711 | 23912881 |
| ENSE00003516019 | 23903933 | 23904087 |
| ENSE00003523652 | 23946144 | 23946284 |
| ENSE00003542194 | 23921452 | 23921585 |
| ENSE00003547045 | 23931062 | 23931201 |
| ENSE00003550360 | 23949765 | 23949924 |
| ENSE00003555413 | 23915289 | 23915422 |
| ENSE00003557575 | 23904553 | 23904694 |
| ENSE00003558318 | 23932160 | 23932291 |
| ENSE00003563647 | 23914698 | 23914860 |
| ENSE00003566698 | 23901127 | 23901323 |
| ENSE00003576290 | 23943788 | 23943971 |
| ENSE00003579345 | 23898738 | 23898848 |
| ENSE00003587308 | 23920935 | 23921054 |
| ENSE00003594674 | 23928625 | 23928765 |
| ENSE00003596126 | 23928123 | 23928240 |
| ENSE00003603639 | 23907550 | 23907666 |
| ENSE00003619747 | 23907756 | 23907935 |
| ENSE00003625431 | 23952990 | 23953109 |
| ENSE00003625465 | 23916551 | 23916695 |
| ENSE00003626876 | 23903009 | 23903125 |
| ENSE00003630361 | 23914410 | 23914561 |
| ENSE00003638548 | 23833828 | 23833988 |
| ENSE00003643714 | 23951684 | 23951777 |
| ENSE00003654397 | 23909153 | 23909295 |
| ENSE00003670732 | 23950029 | 23950159 |
| ENSE00003682989 | 23905522 | 23905624 |
| ENSE00003683765 | 23939223 | 23939386 |
| ENSE00003690348 | 23933782 | 23933935 |
Expression profiles
Bgee: expression breadth ubiquitous, 239 present calls, max score 94.54.
FANTOM5 (CAGE): breadth broad, TPM avg 28.4891 / max 5394.6643, expressed in 866 samples.
FANTOM5 promoters (16 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 169692 | 23.6465 | 251 |
| 169691 | 1.5008 | 111 |
| 169678 | 1.0584 | 467 |
| 169682 | 0.8530 | 370 |
| 169677 | 0.4008 | 201 |
| 169679 | 0.3233 | 154 |
| 169683 | 0.2435 | 124 |
| 169680 | 0.0896 | 20 |
| 208518 | 0.0732 | 30 |
| 169710 | 0.0559 | 25 |
Top tissues by expression
292 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right lung | UBERON:0002167 | 94.54 | gold quality |
| skin of leg | UBERON:0001511 | 93.94 | gold quality |
| skin of abdomen | UBERON:0001416 | 93.88 | gold quality |
| periodontal ligament | UBERON:0008266 | 93.88 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 93.72 | gold quality |
| colonic mucosa | UBERON:0000317 | 93.39 | gold quality |
| jejunal mucosa | UBERON:0000399 | 93.22 | gold quality |
| decidua | UBERON:0002450 | 93.20 | gold quality |
| sural nerve | UBERON:0015488 | 92.75 | gold quality |
| zone of skin | UBERON:0000014 | 92.21 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 91.61 | gold quality |
| minor salivary gland | UBERON:0001830 | 91.37 | gold quality |
| hair follicle | UBERON:0002073 | 90.99 | gold quality |
| upper lobe of lung | UBERON:0008948 | 90.70 | gold quality |
| body of uterus | UBERON:0009853 | 90.69 | gold quality |
| ileal mucosa | UBERON:0000331 | 90.39 | gold quality |
| vagina | UBERON:0000996 | 90.37 | gold quality |
| mouth mucosa | UBERON:0003729 | 90.03 | gold quality |
| pancreatic ductal cell | CL:0002079 | 89.51 | silver quality |
| ectocervix | UBERON:0012249 | 89.11 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 89.09 | gold quality |
| right uterine tube | UBERON:0001302 | 89.09 | gold quality |
| tibial nerve | UBERON:0001323 | 88.75 | gold quality |
| calcaneal tendon | UBERON:0003701 | 88.48 | gold quality |
| duodenum | UBERON:0002114 | 88.18 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 88.18 | gold quality |
| lung | UBERON:0002048 | 88.14 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 87.96 | gold quality |
| left uterine tube | UBERON:0001303 | 87.77 | gold quality |
| endocervix | UBERON:0000458 | 87.71 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ENAD-21 | yes | 1891.77 |
| E-CURD-7 | yes | 1843.65 |
| E-MTAB-7249 | yes | 1222.92 |
| E-MTAB-10855 | yes | 1110.30 |
| E-GEOD-86618 | yes | 798.53 |
| E-MTAB-8559 | yes | 444.74 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): EP300, FOSL2, GDNF, KLF4, MSX2, SMAD4, SP1, USF1
miRNA regulators (miRDB)
52 targeting LAMA3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-106A-5P | 99.90 | 73.94 | 2683 |
| HSA-MIR-302A-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302B-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302C-3P | 99.89 | 71.20 | 1778 |
| HSA-MIR-302D-3P | 99.89 | 71.25 | 1777 |
| HSA-MIR-17-5P | 99.89 | 73.83 | 2665 |
| HSA-MIR-106B-5P | 99.88 | 74.72 | 2795 |
| HSA-MIR-20A-5P | 99.88 | 74.76 | 2769 |
| HSA-MIR-20B-5P | 99.88 | 74.01 | 2621 |
| HSA-MIR-519D-3P | 99.88 | 73.97 | 2607 |
| HSA-MIR-526B-3P | 99.88 | 74.06 | 2587 |
| HSA-MIR-93-5P | 99.88 | 73.98 | 2606 |
| HSA-MIR-3140-3P | 99.88 | 68.47 | 2069 |
| HSA-MIR-6124 | 99.87 | 69.78 | 3551 |
| HSA-MIR-373-3P | 99.84 | 70.68 | 1668 |
| HSA-MIR-520E-3P | 99.84 | 70.55 | 1698 |
| HSA-MIR-372-3P | 99.83 | 70.58 | 1691 |
| HSA-MIR-520A-3P | 99.83 | 70.59 | 1687 |
| HSA-MIR-520B-3P | 99.83 | 70.56 | 1699 |
| HSA-MIR-520C-3P | 99.83 | 70.56 | 1699 |
| HSA-MIR-520D-3P | 99.83 | 70.78 | 1676 |
| HSA-MIR-520F-3P | 99.82 | 71.32 | 1216 |
| HSA-MIR-3681-5P | 99.82 | 66.88 | 387 |
| HSA-MIR-3617-5P | 99.75 | 69.41 | 1968 |
| HSA-MIR-641 | 99.75 | 69.35 | 1975 |
Literature-anchored findings (GeneRIF, showing 40)
- Regulatory implications of a novel mode of interaction of calmodulin with a double IQ-motif target sequence from murine dilute myosin V. (PMID:12441389)
- null behavioral phenotype originates in the nervous system and involves a calmodulin function that requires calcium binding to all four sites of the protein (PMID:14668380)
- the direct interaction of melatonin with intact calcium-saturated CaM is calcium-dependent; Molecular dynamics simulations follow the dynamics of melatonin in the binding pocket of CaM (PMID:15498938)
- potential functional role for calmodulin in regulation of the glycolytic pathway (PMID:15527800)
- A mutation to the gene encoding calmodulin deregulates muscle contraction. (PMID:15557269)
- Drosophila CaM is able to fully activate inducible nitric oxide synthase (iNOS); moreover, iNOS activation by CaM, like neuronal NOS, is not dependent on Ca2+ being bound to all four Ca2+-binding sites, but has specific and distinct requirements. (PMID:15896003)
- Calmodulin/CAMTA/Fbxl4 may mediate a long-term feedback regulation of the activity of Ca(2+)-stimulating G protein-coupled receptor, which could prevent cell damage due to extra Ca(2+) influx. (PMID:17110341)
- Thus, Calmodulin and Abelson tyrosine kinase are key signaling molecules working synergistically to transduce both midline attractive and repulsive cues. (PMID:18243630)
- characterized the interdomain motions in the calcium-bound state of calmodulin (Ca(2+)-CaM) using NMR chemical shifts as replica-averaged structural restraints in molecular dynamics simulations (PMID:24530797)
- Basal body formation in the male testes and the production of functional sperm does not rely on the PLP-CaM interaction, whereas production of functional mechanosensory neurons does. (PMID:25031429)
- Asp-CaM complex has a critical role in centrosome-pole cohesion and centrosome inheritance in neural stem cells (PMID:26620907)
- Calmodulin binds to Drosophila TRP with an unexpected mode. (PMID:33326749)
- Characterization of morphological and cytoskeletal changes in MCF10A breast epithelial cells plated on laminin-5: comparison with breast cancer cell line MCF7. (PMID:11775027)
- Neurite outgrowth promoting sites have been identified on the laminin alpha 3 chain LG4 module. (PMID:12196012)
- In all developing organs investigated, the mRNA of the alpha3 chain of laminin is strictly of epithelial origin and the corresponding protein localised in the underlying basement membrane zones (PMID:12382139)
- These results suggest that the G3 domain of laminin 5 alpha 3 contains two distinct regions that differently regulate cell adhesion and migration. (PMID:12532327)
- laminin alpha 3 LG4 module may play an important role in tissue remodeling by inducing MMP-1 expression during wound healing (PMID:12826666)
- a missense mutation in the adhesion G domain of laminin-5 causes mild junctional epidermolysis bullosa (PMID:12943669)
- results demonstrate that the laminin alpha3 LG4/5 modules within unprocessed laminin-5 permit its cell binding activity through heparan and chondroitin sulfate chains of syndecan-1 (PMID:12947106)
- proteolytic processing of laminin-5 influences its interaction with alpha3beta1 integrin (PMID:14612440)
- LAMA3 promoter methylation is associated with increased breast tumor stage and tumor size (PMID:14695139)
- Characterization of laminin 5B and NH2-terminal proteolytic fragment of its alpha3B chain (PMID:15044476)
- co-cultures of epithelial cells and fibroblasts were studied to analyse the processing of laminin 5 alpha3, beta3, and gamma2 chains (PMID:15149852)
- The G4/5 domain in the alpha3 chain facilitates deposition of precursor laminin 5 into the PBM in epidermal wounds (PMID:15316072)
- Premature termination codon mutations in both alleles of LAMB3 or LAMC2 genes were found in nine of the 11 H junctional epidermolysis bullosa patients (PMID:15373767)
- the LG4-5 domain synergistically enhances integrin signaling as it is released from the precursor LN5 (PMID:15695818)
- the absolute mRNA levels generated from the laminin 5 genes do not determine the translated protein levels of the laminin 5 chains in keratinocytes; the expression of the laminin 5 genes may be controlled by common regulation mechanisms (PMID:15854126)
- The uncoordinated production of chains of ln-5 in allergic asthma could have a bearing on the poor epithelial cell anchorage in these patients. (PMID:16179086)
- Suppression of laminin-5 alpha 3-chain expression in human mammary epithelial cells results in loss of reconstituted extracellular matrix-mediated growth control and apoptosis. (PMID:16219677)
- The hinge region between subdomains G3 and G4 of laminin alpha 3 carries the proteolytic cleavage sites but proteolytic processing plays no role in kerocyte migration. (PMID:16297184)
- tumor cell migration on laminin-5 is inhibited by HYD1, a biologically active integrin-targeting peptide (PMID:16537560)
- Ln-5 is an important regulator of ADPKD cell proliferation and cystogenesis; Ln-5 gamma(2) chain and Ln-5-alpha(6)beta(4) integrin interaction both contribute to these phenotypic changes (PMID:16870608)
- The major contributions of laminin-5 to the resistance of the epidermis against frictional stress but also for basement membrane regeneration and repair of damaged skin are reflected by the phenotype of Herlitz junctional epidermolysis bullosa. (PMID:17000025)
- Laminin-5 may contribute to the development of bone tissues by promoting the proliferation and by suppressing the chondrogenic differentiation of MSCs. (PMID:17071854)
- Laminin-5 alone stimulates global changes in gene/protein expression in mesenchymal stem cells that lead to commitment of these cells to the osteogenic phenotype, and this correlates with extracellular matrix production. (PMID:17137774)
- These results suggest a new possible approach to repairing SCI and, in general, a model which will be useful for other multidisciplinary procedures for complex neurological situations. (PMID:17466943)
- LM-332 is a crucial motility-promoting factor for B-CLL lymphocytes and is a potential constituent favoring the dissemination of B-CLL lymphocytes through vascular basement membranes and possibly lymph node compartments. (PMID:17482449)
- These results suggest that Crk is required for early attachment to laminin, cell motility, and growth of glioblastoma cell line KMG4. (PMID:17825249)
- the alpha3 chain can assemble with only beta3-gamma2 heterodimer to form a heterotrimer via disulfide bonds (PMID:18603785)
- Smad4 mediates transcriptional regulation through three mechanisms: Smad4 binding to a functional SBE site in the LAMA3 promoter, Smad4 binding to AP1 (and Sp1) sites via interaction with AP1 family, and Smad4 impact on transcription of AP1 factors (PMID:18664273)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | si:ch211-241e1.3 | ENSDARG00000022615 |
| danio_rerio | lama3 | ENSDARG00000071462 |
| mus_musculus | Lama3 | ENSMUSG00000024421 |
| rattus_norvegicus | Lama3 | ENSRNOG00000011300 |
Paralogs (27): USH2A (ENSG00000042781), LAMC3 (ENSG00000050555), LAMC2 (ENSG00000058085), NTN1 (ENSG00000065320), NTN4 (ENSG00000074527), ATRN (ENSG00000088812), LAMB4 (ENSG00000091128), LAMB1 (ENSG00000091136), LAMA1 (ENSG00000101680), MEGF8 (ENSG00000105429), MEGF9 (ENSG00000106780), ATRNL1 (ENSG00000107518), LAMA4 (ENSG00000112769), LAMA5 (ENSG00000130702), LAMC1 (ENSG00000135862), NTN5 (ENSG00000142233), HSPG2 (ENSG00000142798), TMEFF2 (ENSG00000144339), NTN3 (ENSG00000162068), NTNG1 (ENSG00000162631), EGFLAM (ENSG00000164318), LAMB2 (ENSG00000172037), AGRN (ENSG00000188157), NTNG2 (ENSG00000196358), LAMA2 (ENSG00000196569), LAMB3 (ENSG00000196878), TMEFF1 (ENSG00000241697)
Protein
Protein identifiers
Laminin subunit alpha-3 — Q16787 (reviewed: Q16787)
Alternative names: Epiligrin 170 kDa subunit, Epiligrin subunit alpha, Kalinin subunit alpha, Laminin-5 subunit alpha, Laminin-6 subunit alpha, Laminin-7 subunit alpha, Nicein subunit alpha
All UniProt accessions (11): A0A075B783, A0A0A0MSA0, A0A0A0MTS5, A0A0A6YYF2, A0A3B3ITG1, Q16787, K7EIP4, K7EMU9, K7EPP3, K7EQ42, K7ERM0
UniProt curated annotations — full annotation on UniProt →
Function. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. Laminin-5 is thought to be involved in (1) cell adhesion via integrin alpha-3/beta-1 in focal adhesion and integrin alpha-6/beta-4 in hemidesmosomes, (2) signal transduction via tyrosine phosphorylation of pp125-FAK and p80, (3) differentiation of keratinocytes.
Subunit / interactions. Laminin is a complex glycoprotein, consisting of three different polypeptide chains (alpha, beta, gamma), which are bound to each other by disulfide bonds into a cross-shaped molecule comprising one long and three short arms with globules at each end. Alpha-3 is a subunit of laminin-5 (laminin-332 or epiligrin/kalinin/nicein), laminin-6 (laminin-311 or K-laminin) and laminin-7 (laminin-321 or KS-laminin).
Subcellular location. Secreted. Extracellular space. Extracellular matrix. Basement membrane.
Tissue specificity. Skin; respiratory, urinary, and digestive epithelia and in other specialized tissues with prominent secretory or protective functions. Epithelial basement membrane, and epithelial cell tongue that migrates into a wound bed. A differential and focal expression of the subunit alpha-3 is observed in the CNS.
Disease relevance. Epidermolysis bullosa, junctional 2A, intermediate (JEB2A) [MIM:619783] A form of epidermolysis bullosa, a genodermatosis characterized by recurrent blistering, fragility of the skin and mucosal epithelia, and erosions caused by minor mechanical trauma. JEB2A is an autosomal recessive, intermediate form in which blistering lesions occur between the epidermis and the dermis at the lamina lucida level of the basement membrane zone. In intermediate forms of junctional epidermolysis bullosa, blistering does not lead to the formation of chronic granulation tissue and does not affect the lifespan of affected individuals. Nail dystrophy and dental enamel defects are present. Scarring or non-scarring alopecia and diffuse hair loss may occur. The disease is caused by variants affecting the gene represented in this entry. Epidermolysis bullosa, junctional 2B, severe (JEB2B) [MIM:619784] A form of epidermolysis bullosa, a genodermatosis characterized by recurrent blistering, fragility of the skin and mucosal epithelia, and erosions caused by minor mechanical trauma. JEB2B is an autosomal recessive form in which blistering lesions occur between the epidermis and the dermis at the lamina lucida level of the basement membrane zone. It belongs to the severe spectrum of junctional epidermolysis bullosa (previously known as generalized severe or Herlitz type), characterized by onset of blistering over large regions of the body at birth or in early infancy. Blistering also affects the mucous membranes, such as the moist lining of the mouth and digestive tract, which can make it difficult to eat and digest food. The extensive blistering leads to scarring and the formation of red, bumpy patches called granulation tissue. Other complications can include fusion of the fingers and toes, abnormalities of the fingernails and toenails, joint deformities, dental enamel defects, and alopecia. Severe, junctional forms are associated with death in the first 6 to 24 months of life. The disease is caused by variants affecting the gene represented in this entry. Epidermolysis bullosa, junctional 2C, laryngoonychocutaneous (JEB2C) [MIM:245660] A form of epidermolysis bullosa, a genodermatosis characterized by recurrent blistering, fragility of the skin and mucosal epithelia, and erosions caused by minor mechanical trauma. JEB2C is an autosomal recessive, severe form in which blistering lesions occur between the epidermis and the dermis at the lamina lucida level of the basement membrane zone. JEB2C manifestations appear in early infancy and include hoarse cry, skin ulceration, nail dystrophy with recurrent loss of toenails and fingernails, and conjunctival scarring. Some patients have amelogenesis imperfecta. Death in childhood is common. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The alpha-helical domains I and II are thought to interact with other laminin chains to form a coiled coil structure. Domain G is globular.
Induction. Laminin-5 is up-regulated in wound sites of human skin.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q16787-2 | 2, B | yes |
| Q16787-1 | 1, A | |
| Q16787-3 | 3 | |
| Q16787-4 | 4 |
RefSeq proteins (4): NP_000218, NP_001121189, NP_001121190, NP_937762* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000034 | Laminin_IV | Domain |
| IPR000742 | EGF | Domain |
| IPR001791 | Laminin_G | Domain |
| IPR002049 | LE_dom | Domain |
| IPR008211 | Laminin_N | Domain |
| IPR009254 | Laminin_aI | Domain |
| IPR010307 | Laminin_dom_II | Domain |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR050440 | Laminin/Netrin_ECM | Family |
| IPR056863 | LMN_ATRN_NET-like_EGF | Domain |
Pfam: PF00052, PF00053, PF00055, PF02210, PF06008, PF06009, PF24973
UniProt features (118 total): disulfide bond 60, domain 22, sequence variant 8, sequence conflict 7, splice variant 5, region of interest 5, glycosylation site 5, coiled-coil region 3, signal peptide 1, chain 1, short sequence motif 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
No AlphaFold model available for Q16787 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (60): 299–308, 301–319, 321–330, 333–353, 356–365, 358–390, 393–402, 405–423, 426–436, 428–443, 445–454, 457–467, 491–503, 493–509, 511–520, 523–533, 536–548, 538–555, 557–566, 569–586 …
Glycosylation sites (5): 142, 242, 2365, 2502, 2584
Function
Pathways and Gene Ontology
Reactome pathways
19 pathways
| ID | Pathway |
|---|---|
| R-HSA-1474228 | Degradation of the extracellular matrix |
| R-HSA-2022090 | Assembly of collagen fibrils and other multimeric structures |
| R-HSA-2214320 | Anchoring fibril formation |
| R-HSA-3000157 | Laminin interactions |
| R-HSA-3000171 | Non-integrin membrane-ECM interactions |
| R-HSA-3000178 | ECM proteoglycans |
| R-HSA-446107 | Type I hemidesmosome assembly |
| R-HSA-8874081 | MET activates PTK2 signaling |
| R-HSA-9638630 | Attachment of bacteria to epithelial cells |
| R-HSA-9913351 | Formation of the dystrophin-glycoprotein complex (DGC) |
| R-HSA-9925563 | Developmental Lineage of Pancreatic Ductal Cells |
| R-HSA-1474244 | Extracellular matrix organization |
| R-HSA-1474290 | Collagen formation |
| R-HSA-1500931 | Cell-Cell communication |
| R-HSA-162582 | Signal Transduction |
| R-HSA-446728 | Cell junction organization |
| R-HSA-6806834 | Signaling by MET |
| R-HSA-8875878 | MET promotes cell motility |
| R-HSA-9006934 | Signaling by Receptor Tyrosine Kinases |
MSigDB gene sets: 468 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_DN, AP1_01, XU_GH1_AUTOCRINE_TARGETS_UP, GOBP_FORMATION_OF_PRIMARY_GERM_LAYER, JAEGER_METASTASIS_DN, LI_PROSTATE_CANCER_EPIGENETIC, SCHLESINGER_METHYLATED_DE_NOVO_IN_CANCER, NAGASHIMA_NRG1_SIGNALING_UP, HATADA_METHYLATED_IN_LUNG_CANCER_DN, CHANG_IMMORTALIZED_BY_HPV31_DN, GOBP_CELL_CELL_ADHESION, CAIRO_HEPATOBLASTOMA_CLASSES_DN, GOBP_HEMIDESMOSOME_ASSEMBLY, GOBP_CELL_JUNCTION_ORGANIZATION, AP1_Q4_01
GO Biological Process (9): epidermis development (GO:0008544), regulation of cell adhesion (GO:0030155), regulation of cell migration (GO:0030334), hemidesmosome assembly (GO:0031581), endodermal cell differentiation (GO:0035987), regulation of embryonic development (GO:0045995), cell-cell adhesion (GO:0098609), cell adhesion (GO:0007155), anatomical structure morphogenesis (GO:0009653)
GO Molecular Function (3): signaling receptor binding (GO:0005102), structural molecule activity (GO:0005198), extracellular matrix structural constituent (GO:0005201)
GO Cellular Component (10): extracellular region (GO:0005576), basement membrane (GO:0005604), laminin-121 trimer (GO:0005608), laminin-332 trimer (GO:0005610), endoplasmic reticulum (GO:0005783), adherens junction (GO:0005912), hemidesmosome (GO:0030056), extracellular matrix (GO:0031012), extracellular exosome (GO:0070062), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-12 pathways:
| Category | Pathways |
|---|---|
| Extracellular matrix organization | 5 |
| Collagen formation | 1 |
| Assembly of collagen fibrils and other multimeric structures | 1 |
| Cell junction organization | 1 |
| MET promotes cell motility | 1 |
| Biofilm formation | 1 |
| Non-integrin membrane-ECM interactions | 1 |
| Developmental Cell Lineages of the Exocrine Pancreas | 1 |
| Cell-Cell communication | 1 |
| Signaling by Receptor Tyrosine Kinases | 1 |
| Signaling by MET | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell adhesion | 2 |
| extracellular matrix | 2 |
| cellular anatomical structure | 2 |
| laminin trimer | 2 |
| tissue development | 1 |
| regulation of cellular process | 1 |
| cell migration | 1 |
| regulation of cell motility | 1 |
| cell-substrate junction assembly | 1 |
| endoderm formation | 1 |
| cell differentiation | 1 |
| embryo development | 1 |
| regulation of multicellular organismal development | 1 |
| cellular process | 1 |
| developmental process | 1 |
| anatomical structure development | 1 |
| protein binding | 1 |
| molecular_function | 1 |
| structural molecule activity | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| cell-cell junction | 1 |
| cell-substrate junction | 1 |
| external encapsulating structure | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
2066 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LAMA3 | LAMB3 | Q13751 | 985 |
| LAMA3 | LAMC2 | Q13753 | 982 |
| LAMA3 | COL17A1 | Q9UMD9 | 936 |
| LAMA3 | ITGB4 | P16144 | 830 |
| LAMA3 | ITGA6 | P23229 | 785 |
| LAMA3 | ITGA3 | P26006 | 736 |
| LAMA3 | DST | Q03001 | 675 |
| LAMA3 | COL7A1 | Q02388 | 647 |
| LAMA3 | TLL2 | Q9Y6L7 | 639 |
| LAMA3 | COL4A1 | P02462 | 637 |
| LAMA3 | COL4A2 | P08572 | 636 |
| LAMA3 | ITGA5 | P08648 | 613 |
| LAMA3 | LAMB1 | P07942 | 612 |
| LAMA3 | NID1 | P14543 | 611 |
| LAMA3 | COL6A1 | P12109 | 573 |
IntAct
57 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| SPINK4 | PLXNA2 | psi-mi:“MI:0914”(association) | 0.530 |
| DEFA1 | MANBA | psi-mi:“MI:0914”(association) | 0.530 |
| SCGB1D4 | EGFR | psi-mi:“MI:0914”(association) | 0.530 |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| OS9 | AGRN | psi-mi:“MI:0914”(association) | 0.530 |
| CFTR | CNOT1 | psi-mi:“MI:0914”(association) | 0.480 |
| LAMA3 | SDC1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SIRT1 | KPNA3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| LAMA3 | KDM3A | psi-mi:“MI:0915”(physical association) | 0.400 |
| VWA8 | psi-mi:“MI:0914”(association) | 0.350 | |
| SCGB2A2 | GXYLT2 | psi-mi:“MI:0914”(association) | 0.350 |
| TSHR | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| CD44 | TCAF2 | psi-mi:“MI:0914”(association) | 0.350 |
| PTPRK | MANBA | psi-mi:“MI:0914”(association) | 0.350 |
| TAZ | MANBA | psi-mi:“MI:0914”(association) | 0.350 |
| SLAMF1 | RTCA | psi-mi:“MI:0914”(association) | 0.350 |
| GML | CLSTN1 | psi-mi:“MI:0914”(association) | 0.350 |
| HRAS | RPL7 | psi-mi:“MI:0914”(association) | 0.350 |
| CFTR | MYH7B | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| OS9 | GXYLT2 | psi-mi:“MI:0914”(association) | 0.350 |
| CDH23 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (72): LAMA3 (Affinity Capture-MS), LAMA3 (Affinity Capture-MS), LAMA3 (Affinity Capture-MS), PLG (Reconstituted Complex), PLAT (Reconstituted Complex), LAMA3 (Affinity Capture-MS), LAMA3 (Affinity Capture-MS), LAMA3 (Affinity Capture-MS), LAMA3 (Affinity Capture-MS), LAMA3 (Affinity Capture-MS), LAMA3 (Affinity Capture-MS), LAMA3 (Affinity Capture-MS), LAMA3 (Affinity Capture-MS), LAMA3 (Affinity Capture-MS), LAMA3 (Affinity Capture-MS)
ESM2 similar proteins: A0JP86, A1A5Y0, A4D0S4, G5ECE3, O15230, P11046, P15215, P15800, P16144, P18563, P18564, P19137, P24043, P25391, P26010, P26011, P55268, P58459, P97607, Q13751, Q13753, Q16787, Q1EHB3, Q1RPR6, Q2KIT5, Q2QI47, Q5RB89, Q60438, Q60675, Q61001, Q61087, Q61092, Q61292, Q61789, Q68SA9, Q6AYF4, Q75N90, Q863C4, Q8BG22, Q8HZI9
Diamond homologs: A0JP86, A2ASQ1, G5ECE3, O00468, O00634, O09118, O15230, O75445, O75882, O95631, P02468, P11047, P15215, P19137, P24043, P25304, P25391, P31696, P34710, P97927, Q00174, Q01635, Q13751, Q13753, Q16363, Q16787, Q18823, Q19981, Q1LVF0, Q24567, Q24568, Q27262, Q2HXW4, Q2QI47, Q5RB89, Q5VV63, Q60675, Q61001, Q61087, Q61092
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| GDNF | “up-regulates quantity by expression” | LAMA3 | “transcriptional regulation” |
| LAMA3 | “form complex” | Laminin-5 | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
2289 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 126 |
| Likely pathogenic | 134 |
| Uncertain significance | 626 |
| Likely benign | 1111 |
| Benign | 144 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1047960 | NM_198129.4(LAMA3):c.6319-1G>T | Pathogenic |
| 1047961 | NM_198129.4(LAMA3):c.6348_6352delinsCTGGCAAGA (p.Glu2117fs) | Pathogenic |
| 1047962 | NM_198129.4(LAMA3):c.9856G>T (p.Ala3286Ser) | Pathogenic |
| 1068548 | NM_198129.4(LAMA3):c.6469G>T (p.Glu2157Ter) | Pathogenic |
| 1069997 | NM_198129.4(LAMA3):c.5622_5635del (p.Leu1874fs) | Pathogenic |
| 1070832 | NM_198129.4(LAMA3):c.8145T>A (p.Tyr2715Ter) | Pathogenic |
| 1070853 | NC_000018.9:g.(?21478692)(21479039_?)del | Pathogenic |
| 1071930 | NM_198129.4(LAMA3):c.6100A>T (p.Lys2034Ter) | Pathogenic |
| 1071950 | NM_198129.4(LAMA3):c.9887G>A (p.Trp3296Ter) | Pathogenic |
| 1072339 | NM_198129.4(LAMA3):c.5394T>A (p.Cys1798Ter) | Pathogenic |
| 1072501 | NM_198129.4(LAMA3):c.6847_6854del (p.Ala2283fs) | Pathogenic |
| 1074803 | NC_000018.9:g.(?21484507)(21485598_?)del | Pathogenic |
| 1075696 | NM_198129.4(LAMA3):c.5568dup (p.Leu1857fs) | Pathogenic |
| 1252054 | NM_198129.4(LAMA3):c.8302C>T (p.Arg2768Ter) | Pathogenic |
| 1321416 | NM_198129.4(LAMA3):c.7204C>T (p.Arg2402Ter) | Pathogenic |
| 1323177 | NM_198129.4(LAMA3):c.5000_5003del (p.Gly1667fs) | Pathogenic |
| 1323178 | NM_198129.4(LAMA3):c.8087_8090delinsTGC (p.Asn2696fs) | Pathogenic |
| 1350464 | NM_198129.4(LAMA3):c.9617T>G (p.Leu3206Ter) | Pathogenic |
| 1361060 | NM_198129.4(LAMA3):c.9893C>A (p.Ser3298Ter) | Pathogenic |
| 1369957 | NM_198129.4(LAMA3):c.8755A>T (p.Lys2919Ter) | Pathogenic |
| 1371125 | NM_198129.4(LAMA3):c.7738del (p.Thr2580fs) | Pathogenic |
| 1379401 | NM_198129.4(LAMA3):c.5137G>T (p.Glu1713Ter) | Pathogenic |
| 1400822 | NM_198129.4(LAMA3):c.9236dup (p.Arg3081fs) | Pathogenic |
| 1404615 | NM_198129.4(LAMA3):c.5728C>T (p.Gln1910Ter) | Pathogenic |
| 1412135 | NM_198129.4(LAMA3):c.5992G>T (p.Glu1998Ter) | Pathogenic |
| 1412583 | NM_198129.4(LAMA3):c.6778G>T (p.Glu2260Ter) | Pathogenic |
| 1417958 | NM_198129.4(LAMA3):c.8284del (p.Glu2762fs) | Pathogenic |
| 1422229 | NM_198129.4(LAMA3):c.8911C>T (p.Gln2971Ter) | Pathogenic |
| 1422425 | NM_198129.4(LAMA3):c.6199C>T (p.Gln2067Ter) | Pathogenic |
| 1441309 | NM_198129.4(LAMA3):c.5119C>T (p.Gln1707Ter) | Pathogenic |
SpliceAI
11506 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 18:23713916:TCAG:T | acceptor_loss | 1.0000 |
| 18:23713917:CAGG:C | acceptor_loss | 1.0000 |
| 18:23713918:A:AG | acceptor_gain | 1.0000 |
| 18:23713918:AG:A | acceptor_gain | 1.0000 |
| 18:23713919:G:GT | acceptor_gain | 1.0000 |
| 18:23713919:GG:G | acceptor_gain | 1.0000 |
| 18:23713919:GGGCC:G | acceptor_gain | 1.0000 |
| 18:23714070:CAGGT:C | donor_loss | 1.0000 |
| 18:23714071:AGGTG:A | donor_loss | 1.0000 |
| 18:23714073:GTG:G | donor_loss | 1.0000 |
| 18:23714074:T:G | donor_loss | 1.0000 |
| 18:23747937:TATCA:T | acceptor_loss | 1.0000 |
| 18:23747938:ATCAG:A | acceptor_loss | 1.0000 |
| 18:23747939:TCAG:T | acceptor_loss | 1.0000 |
| 18:23747940:CAGC:C | acceptor_loss | 1.0000 |
| 18:23747941:A:AG | acceptor_gain | 1.0000 |
| 18:23747941:AGC:A | acceptor_loss | 1.0000 |
| 18:23747942:G:A | acceptor_loss | 1.0000 |
| 18:23747942:G:GA | acceptor_gain | 1.0000 |
| 18:23748056:TGCTC:T | donor_gain | 1.0000 |
| 18:23748057:GCTC:G | donor_gain | 1.0000 |
| 18:23748057:GCTCG:G | donor_gain | 1.0000 |
| 18:23748058:CTC:C | donor_gain | 1.0000 |
| 18:23748059:TC:T | donor_gain | 1.0000 |
| 18:23748060:CG:C | donor_loss | 1.0000 |
| 18:23748061:G:GG | donor_gain | 1.0000 |
| 18:23748061:GT:G | donor_loss | 1.0000 |
| 18:23748062:TAAG:T | donor_loss | 1.0000 |
| 18:23748063:A:AT | donor_loss | 1.0000 |
| 18:23748064:AGT:A | donor_loss | 1.0000 |
AlphaMissense
21889 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 18:23909264:T:C | L2376P | 0.998 |
| 18:23909275:G:C | A2380P | 0.998 |
| 18:23861664:T:A | W1481R | 0.996 |
| 18:23861664:T:C | W1481R | 0.996 |
| 18:23928151:G:C | G2736R | 0.996 |
| 18:23928154:T:A | C2737S | 0.996 |
| 18:23928155:G:C | C2737S | 0.996 |
| 18:23928223:T:C | C2760R | 0.996 |
| 18:23714006:G:C | W127C | 0.995 |
| 18:23714006:G:T | W127C | 0.995 |
| 18:23714010:A:C | S129R | 0.995 |
| 18:23714012:C:A | S129R | 0.995 |
| 18:23714012:C:G | S129R | 0.995 |
| 18:23928154:T:C | C2737R | 0.995 |
| 18:23928223:T:A | C2760S | 0.995 |
| 18:23928224:G:C | C2760S | 0.995 |
| 18:23689927:T:A | C82S | 0.994 |
| 18:23689928:G:C | C82S | 0.994 |
| 18:23689929:C:G | C82W | 0.994 |
| 18:23713929:T:A | C102S | 0.994 |
| 18:23713930:G:C | C102S | 0.994 |
| 18:23714004:T:A | W127R | 0.994 |
| 18:23714004:T:C | W127R | 0.994 |
| 18:23915361:A:C | S2573R | 0.994 |
| 18:23915363:C:A | S2573R | 0.994 |
| 18:23915363:C:G | S2573R | 0.994 |
| 18:23916580:T:G | F2603C | 0.994 |
| 18:23920951:T:C | L2647P | 0.994 |
| 18:23921558:G:A | G2717E | 0.994 |
| 18:23928152:G:A | G2736D | 0.994 |
dbSNP variants (sampled 300 via entrez): RS1000004758 (18:23925781 G>T), RS1000008419 (18:23846639 T>C), RS1000009756 (18:23809926 T>C), RS1000011371 (18:23744686 G>A), RS1000013857 (18:23853186 AAAAT>A,AAAATAAAT), RS1000024389 (18:23837372 G>C,T), RS1000025785 (18:23698276 G>A,C), RS1000030198 (18:23840560 A>T), RS1000054308 (18:23937609 G>T), RS1000055444 (18:23729888 C>T), RS1000058071 (18:23695159 A>G), RS1000067236 (18:23701369 T>C), RS1000071294 (18:23906581 A>G), RS1000102051 (18:23906025 A>G), RS1000108879 (18:23795837 A>T)
Disease associations
OMIM: gene MIM:600805 | disease phenotypes: MIM:226650, MIM:226700, MIM:245660, MIM:619783, MIM:619784, MIM:178500
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| laryngo-onycho-cutaneous syndrome | Definitive | Autosomal recessive |
| junctional epidermolysis bullosa | Definitive | Autosomal recessive |
| junctional epidermolysis bullosa, non-Herlitz type | Strong | Autosomal recessive |
| junctional epidermolysis bullosa Herlitz type | Strong | Autosomal recessive |
| epidermolysis bullosa, junctional 2A, intermediate | Strong | Autosomal recessive |
| epidermolysis bullosa, junctional 2B, severe | Strong | Autosomal recessive |
| generalized junctional epidermolysis bullosa non-Herlitz type | Supportive | Autosomal recessive |
Mondo (8): junctional epidermolysis bullosa, non-Herlitz type (MONDO:0009180), junctional epidermolysis bullosa (MONDO:0017612), junctional epidermolysis bullosa Herlitz type (MONDO:0009182), laryngo-onycho-cutaneous syndrome (MONDO:0009513), epidermolysis bullosa, junctional 2A, intermediate (MONDO:0030746), epidermolysis bullosa, junctional 2B, severe (MONDO:0030747), interstitial lung disease 2 (MONDO:0800497), generalized junctional epidermolysis bullosa non-Herlitz type (MONDO:0019307)
Orphanet (9): Localized junctional epidermolysis bullosa (Orphanet:251393), Intermediate generalized junctional epidermolysis bullosa (Orphanet:79402), Junctional epidermolysis bullosa inversa (Orphanet:79405), OBSOLETE: Junctional epidermolysis bullosa, non-Herlitz type (Orphanet:89840), Junctional epidermolysis bullosa (Orphanet:305), Laryngo-onycho-cutaneous syndrome (Orphanet:2407), Severe generalized junctional epidermolysis bullosa (Orphanet:79404), Idiopathic pulmonary fibrosis (Orphanet:2032), Acute interstitial pneumonia (Orphanet:79126)
HPO phenotypes
98 total (30 of 98 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000003 | Multicystic kidney dysplasia |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000010 | Recurrent urinary tract infections |
| HP:0000014 | Abnormality of the bladder |
| HP:0000016 | Urinary retention |
| HP:0000070 | Ureterocele |
| HP:0000072 | Hydroureter |
| HP:0000081 | Duplicated collecting system |
| HP:0000107 | Renal cyst |
| HP:0000126 | Hydronephrosis |
| HP:0000421 | Epistaxis |
| HP:0000481 | Abnormal cornea morphology |
| HP:0000505 | Visual impairment |
| HP:0000670 | Carious teeth |
| HP:0000684 | Delayed eruption of teeth |
| HP:0000691 | Microdontia |
| HP:0000705 | Amelogenesis imperfecta |
| HP:0000939 | Osteoporosis |
| HP:0000969 | Edema |
| HP:0000982 | Palmoplantar keratoderma |
| HP:0000999 | Pyoderma |
| HP:0001000 | Abnormality of skin pigmentation |
| HP:0001030 | Fragile skin |
| HP:0001056 | Milia |
| HP:0001057 | Aplasia cutis congenita |
| HP:0001075 | Atrophic scars |
| HP:0001159 | Syndactyly |
| HP:0001211 | Abnormal fingertip morphology |
| HP:0001250 | Seizure |
| HP:0001508 | Failure to thrive |
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D016109 | Epidermolysis Bullosa, Junctional | C16.131.831.493.170; C16.320.850.275.170; C17.800.804.493.170; C17.800.827.275.170; C17.800.865.410.170 |
| C537032 | Laryngo onycho cutaneous syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2364187 (PROTEIN COMPLEX GROUP)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
82 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Estradiol | affects expression, affects cotreatment, increases expression, decreases expression | 5 |
| sodium arsenite | affects expression, affects methylation, increases expression | 3 |
| Zoledronic Acid | increases expression | 3 |
| Air Pollutants | affects cotreatment, decreases expression, increases abundance, increases oxidation, increases expression | 3 |
| Tetrachlorodibenzodioxin | affects cotreatment, increases expression, decreases expression | 3 |
| bisphenol A | increases methylation, increases expression, affects cotreatment | 2 |
| chloropicrin | affects expression, decreases expression | 2 |
| Benzo(a)pyrene | increases expression, affects methylation, decreases methylation | 2 |
| Cisplatin | decreases expression, increases expression | 2 |
| Formaldehyde | decreases expression, increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, increases expression | 2 |
| Tretinoin | decreases expression, increases expression | 2 |
| Cyclosporine | decreases expression, affects expression | 2 |
| Aflatoxin B1 | increases expression, increases methylation | 2 |
| Cadmium Chloride | affects expression, decreases expression | 2 |
| Particulate Matter | increases expression, affects cotreatment, increases abundance | 2 |
| 4-oxoretinoic acid | decreases expression | 1 |
| chloroacetaldehyde | affects expression | 1 |
| alpha-pinene | decreases expression, increases oxidation, increases abundance, affects cotreatment | 1 |
| pyrogallol 1,3-dimethyl ether | affects localization, affects cotreatment, increases expression, decreases expression | 1 |
| 2,4,5,2’,4’,5’-hexachlorobiphenyl | increases expression | 1 |
| beta-lapachone | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| benzo(e)pyrene | affects methylation, increases methylation | 1 |
| cupric chloride | increases expression | 1 |
| phenanthrene | increases expression | 1 |
| lysophosphatidic acid | increases expression | 1 |
| benazol P | affects expression | 1 |
| methacrylaldehyde | increases oxidation, increases abundance, affects cotreatment, decreases expression | 1 |
| brequinar | increases expression | 1 |
Cellosaurus cell lines
2 cell lines: 1 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1VH | Abcam HeLa LAMA3 KO | Cancer cell line | Female |
| CVCL_D9I7 | Ubigene HEK293 LAMA3 KO | Transformed cell line | Female |
Clinical trials (associated diseases)
17 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00587223 | PHASE3 | TERMINATED | Safety and Efficacy of Apligraf in Nonhealing Wounds of Subjects With Junctional or Dystrophic Epidermolysis Bullosa (EB) |
| NCT06917690 | PHASE3 | RECRUITING | A Study to Learn About the Safety and Efficacy of the Drug Oleogel-S10 in Japanese Patients With Epidermolysis Bullosa |
| NCT03578029 | PHASE2 | TERMINATED | Evaluation of the Safety and Efficacy Study of RGN-137 Topical Gel for Junctional and Dystrophic Epidermolysis Bullosa |
| NCT04908215 | PHASE2 | COMPLETED | INM-755 (Cannabinol) Cream for Treatment of Epidermolysis Bullosa |
| NCT06594393 | PHASE2 | RECRUITING | A Phase 2 Study of TCP-25 Gel in Patients With Epidermolysis Bullosa, STEP-study |
| NCT03472287 | PHASE1 | COMPLETED | To Evaluate the Pharmacokinetic of Diacerein and Rhein After Maximum Use in Patients With Epidermolysis Bullosa (EB) |
| NCT06713434 | PHASE1 | ACTIVE_NOT_RECRUITING | Pilot Study of ELK-003 Eye Drops for Treating Ocular Manifestations of Epidermolysis Bullosa |
| NCT04727268 | Not specified | UNKNOWN | Genotype-phenotype Correlation in Junctional Epidermolysis Bullosa |
| NCT03490331 | PHASE1/PHASE2 | TERMINATED | Clinical Trial to Assess Safety and Efficacy of Autologous Cultured Epidermal Grafts Containing Epidermal Stem Cells Genetically Modified in Patients With JEB (HOLOGENE17) |
| NCT03526159 | PHASE1/PHASE2 | RECRUITING | Gentamicin for Junctional Epidermolysis Bullosa |
| NCT04140786 | PHASE1/PHASE2 | UNKNOWN | Optimizing IV Gentamicin in JEB |
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| NCT06007235 | Not specified | UNKNOWN | CACIPLIQ20 in Wound Healing in Subjects With Epidermolysis Bullosa |
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Related Atlas pages
- Associated diseases: junctional epidermolysis bullosa, non-Herlitz type, junctional epidermolysis bullosa Herlitz type, laryngo-onycho-cutaneous syndrome, junctional epidermolysis bullosa, generalized junctional epidermolysis bullosa non-Herlitz type, epidermolysis bullosa, junctional 2A, intermediate, epidermolysis bullosa, junctional 2B, severe
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): epidermolysis bullosa, junctional 2A, intermediate, epidermolysis bullosa, junctional 2B, severe, generalized junctional epidermolysis bullosa non-Herlitz type, interstitial lung disease 2, junctional epidermolysis bullosa, junctional epidermolysis bullosa Herlitz type, junctional epidermolysis bullosa, non-Herlitz type, laryngo-onycho-cutaneous syndrome