LAMA4
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Also known as LAMA3
Summary
LAMA4 (laminin subunit alpha 4, HGNC:6484) is a protein-coding gene on chromosome 6q21, encoding Laminin subunit alpha-4 (Q16363). Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins are composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively) and they form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. Several isoforms of each chain have been described. Different alpha, beta and gamma chain isomers combine to give rise to different heterotrimeric laminin isoforms which are designated by Arabic numerals in the order of their discovery, i.e. alpha1beta1gamma1 heterotrimer is laminin 1. The biological functions of the different chains and trimer molecules are largely unknown, but some of the chains have been shown to differ with respect to their tissue distribution, presumably reflecting diverse functions in vivo. This gene encodes the alpha chain isoform laminin, alpha 4. The domain structure of alpha 4 is similar to that of alpha 3, both of which resemble truncated versions of alpha 1 and alpha 2, in that approximately 1,200 residues at the N-terminus (domains IV, V and VI) have been lost. Laminin, alpha 4 contains the C-terminal G domain which distinguishes all alpha chains from the beta and gamma chains. The RNA analysis from adult and fetal tissues revealed developmental regulation of expression, however, the exact function of laminin, alpha 4 is not known. Tissue-specific utilization of alternative polyA-signal has been described in literature. Alternative splicing results in multiple transcript variants encoding distinct isoforms.
Source: NCBI Gene 3910 — RefSeq curated summary.
At a glance
- Gene–disease (curated): junctional epidermolysis bullosa (Definitive, GenCC) — +8 more curated relationships
- GWAS associations: 16
- Clinical variants (ClinVar): 4,541 total — 126 pathogenic, 137 likely-pathogenic
- Phenotypes (HPO): 18
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity unscored
- MANE Select transcript:
NM_001105206
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6484 |
| Approved symbol | LAMA4 |
| Name | laminin subunit alpha 4 |
| Location | 6q21 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | LAMA3 |
| Ensembl gene | ENSG00000112769 |
| Ensembl biotype | protein_coding |
| OMIM | 600133 |
| Entrez | 3910 |
Gene structure
Transcript identifiers
Ensembl transcripts: 32 — 23 protein_coding, 5 retained_intron, 2 protein_coding_CDS_not_defined, 2 nonsense_mediated_decay
ENST00000230538, ENST00000243219, ENST00000368638, ENST00000368640, ENST00000389463, ENST00000423735, ENST00000424408, ENST00000431543, ENST00000453937, ENST00000455073, ENST00000518842, ENST00000519245, ENST00000519932, ENST00000521187, ENST00000521398, ENST00000521690, ENST00000521693, ENST00000521732, ENST00000522006, ENST00000523765, ENST00000524032, ENST00000604740, ENST00000651529, ENST00000651860, ENST00000905054, ENST00000905055, ENST00000905056, ENST00000905057, ENST00000905058, ENST00000905059, ENST00000951658, ENST00000951659
RefSeq mRNA: 5 — MANE Select: NM_001105206
NM_001105206, NM_001105207, NM_001105208, NM_001105209, NM_002290
CCDS: CCDS34514, CCDS43491, CCDS43492
Canonical transcript exons
ENST00000230538 — 39 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000762308 | 112114076 | 112114195 |
| ENSE00000762309 | 112114663 | 112114756 |
| ENSE00000762311 | 112117739 | 112117898 |
| ENSE00000762312 | 112119156 | 112119311 |
| ENSE00000762313 | 112120283 | 112120472 |
| ENSE00000762314 | 112122014 | 112122201 |
| ENSE00000762316 | 112129876 | 112130040 |
| ENSE00000762317 | 112130968 | 112131101 |
| ENSE00000762318 | 112132753 | 112132890 |
| ENSE00000762319 | 112133349 | 112133487 |
| ENSE00000762320 | 112134467 | 112134609 |
| ENSE00000762322 | 112136123 | 112136254 |
| ENSE00000762324 | 112139120 | 112139291 |
| ENSE00000762326 | 112139752 | 112139885 |
| ENSE00000762328 | 112140760 | 112140922 |
| ENSE00000762329 | 112141358 | 112141503 |
| ENSE00000762330 | 112142119 | 112142292 |
| ENSE00000762333 | 112150511 | 112150627 |
| ENSE00000762334 | 112154851 | 112154947 |
| ENSE00000762335 | 112155565 | 112155706 |
| ENSE00000762336 | 112158732 | 112158880 |
| ENSE00000762337 | 112165160 | 112165276 |
| ENSE00000762338 | 112172611 | 112172804 |
| ENSE00000762340 | 112178121 | 112178232 |
| ENSE00000762341 | 112185237 | 112185347 |
| ENSE00000762342 | 112187450 | 112187601 |
| ENSE00000762343 | 112189110 | 112189205 |
| ENSE00000762344 | 112191636 | 112191850 |
| ENSE00000839988 | 112115863 | 112115993 |
| ENSE00000919069 | 112253956 | 112254291 |
| ENSE00001447682 | 112254459 | 112254567 |
| ENSE00001942586 | 112107931 | 112109582 |
| ENSE00003529949 | 112128922 | 112129075 |
| ENSE00003540024 | 112216368 | 112216469 |
| ENSE00003554997 | 112207021 | 112207145 |
| ENSE00003640406 | 112144794 | 112144933 |
| ENSE00003644431 | 112201608 | 112201688 |
| ENSE00003645036 | 112148157 | 112148336 |
| ENSE00003683085 | 112175313 | 112175480 |
Expression profiles
Bgee: expression breadth ubiquitous, 268 present calls, max score 98.98.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 30.1195 / max 451.0453, expressed in 1105 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 75161 | 13.2815 | 1003 |
| 75160 | 11.7270 | 1019 |
| 75159 | 2.6815 | 808 |
| 75163 | 0.7963 | 331 |
| 75158 | 0.5730 | 278 |
| 75156 | 0.4927 | 267 |
| 75162 | 0.3332 | 206 |
| 75157 | 0.2341 | 97 |
Top tissues by expression
290 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus muscularis layer | UBERON:0035833 | 98.98 | gold quality |
| lower esophagus | UBERON:0013473 | 98.95 | gold quality |
| nerve | UBERON:0001021 | 98.84 | gold quality |
| tibial nerve | UBERON:0001323 | 98.84 | gold quality |
| left uterine tube | UBERON:0001303 | 98.82 | gold quality |
| peritoneum | UBERON:0002358 | 98.67 | gold quality |
| omental fat pad | UBERON:0010414 | 98.67 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 98.62 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 98.53 | gold quality |
| colonic epithelium | UBERON:0000397 | 98.47 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 98.46 | gold quality |
| parietal pleura | UBERON:0002400 | 98.37 | gold quality |
| body of uterus | UBERON:0009853 | 98.33 | gold quality |
| sural nerve | UBERON:0015488 | 98.11 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 98.08 | gold quality |
| adipose tissue | UBERON:0001013 | 97.95 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 97.86 | gold quality |
| saphenous vein | UBERON:0007318 | 97.76 | gold quality |
| pleura | UBERON:0000977 | 97.75 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 97.65 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 97.63 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 97.60 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 97.59 | gold quality |
| connective tissue | UBERON:0002384 | 97.58 | gold quality |
| myometrium | UBERON:0001296 | 97.50 | gold quality |
| vena cava | UBERON:0004087 | 97.13 | gold quality |
| urethra | UBERON:0000057 | 97.12 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 97.12 | gold quality |
| synovial joint | UBERON:0002217 | 97.09 | gold quality |
| endocervix | UBERON:0000458 | 97.06 | gold quality |
Single-cell (SCXA)
Detected in 17 experiment(s), a significant marker in 15.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-10 | yes | 47.82 |
| E-ANND-3 | yes | 18.96 |
| E-HCAD-1 | yes | 17.29 |
| E-MTAB-8410 | yes | 16.73 |
| E-MTAB-6701 | yes | 16.26 |
| E-CURD-112 | yes | 14.05 |
| E-MTAB-5061 | yes | 11.60 |
| E-GEOD-84465 | yes | 9.33 |
| E-CURD-46 | yes | 8.63 |
| E-HCAD-35 | yes | 8.48 |
| E-MTAB-9067 | yes | 7.78 |
| E-GEOD-83139 | yes | 7.77 |
| E-GEOD-130148 | yes | 7.19 |
| E-GEOD-93593 | yes | 4.55 |
| E-MTAB-7249 | yes | 3.52 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOXM1
miRNA regulators (miRDB)
73 targeting LAMA4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4682 | 100.00 | 68.89 | 1258 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-196A-5P | 100.00 | 68.16 | 684 |
| HSA-MIR-196B-5P | 100.00 | 68.16 | 681 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-1236-3P | 99.94 | 68.04 | 1695 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-MIR-129-5P | 99.88 | 70.26 | 3273 |
| HSA-MIR-30A-3P | 99.87 | 69.74 | 2928 |
| HSA-MIR-30D-3P | 99.87 | 69.92 | 2917 |
| HSA-MIR-30E-3P | 99.87 | 69.68 | 2942 |
| HSA-MIR-6515-3P | 99.82 | 68.19 | 1933 |
| HSA-MIR-4495 | 99.82 | 72.08 | 3080 |
| HSA-MIR-3133 | 99.81 | 70.92 | 3506 |
| HSA-MIR-4760-5P | 99.80 | 69.88 | 1619 |
| HSA-MIR-7856-5P | 99.75 | 69.99 | 2901 |
| HSA-MIR-148A-3P | 99.74 | 73.77 | 1700 |
| HSA-MIR-148B-3P | 99.74 | 73.75 | 1700 |
| HSA-MIR-152-3P | 99.74 | 73.75 | 1703 |
| HSA-MIR-4428 | 99.73 | 66.41 | 1733 |
| HSA-MIR-379-3P | 99.69 | 69.60 | 1524 |
| HSA-MIR-411-3P | 99.69 | 69.63 | 1524 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity Not yet evaluated (unscored). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 30)
- Laminins with alpha1, alpha4, and alpha5 chains are compared to determine laminin isoform-specific promotion of adhesion and migration of human bone marrow progenitor cells. (PMID:12393739)
- Data report the identification of a splice variant of the human laminin alpha4 subunit transcript containing 21 extra nucleotides. (PMID:12445830)
- The G domain of laminin alpha4 chain is a specific, high affinity ligand for alphavbeta3 & alpha3beta1 integrin heterodimers. These integrins, with alpha6beta1, cooperatively mediate endothelial cell-alpha4 laminin interaction & blood vessel development. (PMID:12454288)
- The alpha4 laminin subunit regulates vascular endothelium cell survival. (PMID:14980521)
- laminin alpha4 LG4 module may play an important role in cell adhesion and/or vessel wall formation in the skin by interacting with syndecan-2 and/or -4. (PMID:15086543)
- Downregulation of laminin alpha4 chain expression inhibits glioma invasion (PMID:15915502)
- laminin isoform changes are associated with brain tumor invasion and angiogenesis [review] (PMID:16146715)
- This suggests that G(1121-1139) peptide-containing proteins may perform their biological functions by interacting with alphavbeta3 integrin. (PMID:16824487)
- alpha4 chain Lms have a de-adhesive function and could thus play a role in detachment, migration and invasion of renal carcinoma cells in vivo. (PMID:17533363)
- 2 novel mutations (2828C>T [Pro943Leu] & 3217C>T [Arg1073X]) in the integrin-interacting domain of the LAMA4 gene reduce its integrin binding, & cause endothelial cell loss and heart failure. (PMID:17646580)
- LAMA4 is specifically up-regulated on both mRNA and protein levels in hepatocelluar carcinoma; potential role in hepatocarcinogenesis and tumor progression. (PMID:18084776)
- Concomitant changes take place in laminin- and collagen-binding receptors. Laminin-411 reduces adhesion to laminin-511 and fibronectin, suggesting that tumor cells could utilize laminin-411 in their invasive behavior (PMID:18496706)
- LM alpha4 and beta2 have roles in in vitro migration and in vivo tumorigenicity of prostate cancer cells (PMID:19048114)
- LAMC2, LAMA4, ITGB1, ITGB3, RSPA and MMP2) are overexpressed in angiotropic melanoma cells vs. non-angiotropic melanoma cells from the same tumor (PMID:19469865)
- Data from experiment with peptide fragments suggest laminin alpha4 (and laminin alpha5) may be part of host defense response and may protect tissues from invading pathogens. (PMID:20433883)
- These results indicate that mAbs to the laminin a4 globular domain are able to inhibit tumor cell adhesion and migration on laminins 411 and 421, and that alpha6beta1 integrin and MCAM bind a4-laminins at very close sites on the globular domain (PMID:24681327)
- Laminins 411 and 421 differentially promote tumor cell migration via alpha6beta1 integrin and MCAM (CD146). (PMID:24951930)
- Oxidative stress plays a vital role in controlling expression of LAMA4 through MAPK signaling pathways, which suggests a possible pathological mechanism of pre-eclampsia. (PMID:25676580)
- LAMA4 expression is lowered in preeclamptic placentas and promotes trophoblast cell invasion, migration, and angiogenesis. hypoxia-reoxygenation decreases LAMA4 expression and decouple the relationship between LAMA4 expression and p38 and ERK activation. (PMID:26059342)
- LAMA4-integrin signalling affects chondrocyte morphology and gene expression, contributing to cluster formation in osteoarthritic chondrocytes. (PMID:26295200)
- highlight MCAM and LAMA4 as prime candidates for RCC prognosis and therapeutic targeting (PMID:26921326)
- Disruption of LAMA4, LAMA5, and LAMB2 or the laminin-receptor interaction occurs in neuromuscular diseases including Pierson syndrome and Lambert-Eaton myasthenic syndrome (LEMS). (Review) (PMID:27614294)
- High LAMA4 expression is associated with gastric cancer. (PMID:30015861)
- In diverse models, laminins alpha-4 (LAMA4) and alpha-5 (LAMA5) were differentially regulated. Immunity was associated with decreased LAMA4:LAMA5 ratio, while tolerance was associated with an increased ratio. LAMA4inhibited CD4+ T-cell proliferation and Th1, Th2, and Th17 polarization but favored Treg induction. LAMA4 and LAMA5 are coinhibitory and costimulatory ligands for human and mouse CD4 T cells, respectively. (PMID:31343575)
- High LAMA4 expression is associated with inflammation in asthma. (PMID:31553662)
- Downregulation of the LAMA4 gene inhibits the proliferation, migration, and invasion of extravillous trophoblasts to suppress the expression of vascular factors, leading to the occurrence or development of preeclampsia. (PMID:31842202)
- Laminin Subunit Alpha-4 and Osteopontin Are Glioblastoma-Selective Secreted Proteins That Are Increased in the Cerebrospinal Fluid of Glioblastoma Patients. (PMID:32628487)
- Laminin-alpha4 Is Upregulated in Both Human and Murine Models of Obesity. (PMID:34394003)
- Effect of LAMA4 on Prognosis and Its Correlation with Immune Infiltration in Gastric Cancer. (PMID:34414238)
- [Research Progress on the Role of Laminin Subunit Alpha 4 in Diseases]. (PMID:36861161)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Lama4 | ENSMUSG00000019846 |
| rattus_norvegicus | Lama4 | ENSRNOG00000000599 |
Paralogs (27): USH2A (ENSG00000042781), LAMC3 (ENSG00000050555), LAMA3 (ENSG00000053747), LAMC2 (ENSG00000058085), NTN1 (ENSG00000065320), NTN4 (ENSG00000074527), ATRN (ENSG00000088812), LAMB4 (ENSG00000091128), LAMB1 (ENSG00000091136), LAMA1 (ENSG00000101680), MEGF8 (ENSG00000105429), MEGF9 (ENSG00000106780), ATRNL1 (ENSG00000107518), LAMA5 (ENSG00000130702), LAMC1 (ENSG00000135862), NTN5 (ENSG00000142233), HSPG2 (ENSG00000142798), TMEFF2 (ENSG00000144339), NTN3 (ENSG00000162068), NTNG1 (ENSG00000162631), EGFLAM (ENSG00000164318), LAMB2 (ENSG00000172037), AGRN (ENSG00000188157), NTNG2 (ENSG00000196358), LAMA2 (ENSG00000196569), LAMB3 (ENSG00000196878), TMEFF1 (ENSG00000241697)
Protein
Protein identifiers
Laminin subunit alpha-4 — Q16363 (reviewed: Q16363)
Alternative names: Laminin-14 subunit alpha, Laminin-8 subunit alpha, Laminin-9 subunit alpha
All UniProt accessions (12): A0A0A0MTC7, A0A494C139, A0A494C1K8, E5RFD7, E5RFQ2, E5RHF3, E5RK79, Q16363, H0Y351, H0YAP9, H0YAQ5, Q6LET9
UniProt curated annotations — full annotation on UniProt →
Function. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
Subunit / interactions. Laminin is a complex glycoprotein, consisting of three different polypeptide chains (alpha, beta, gamma), which are bound to each other by disulfide bonds into a cross-shaped molecule comprising one long and three short arms with globules at each end. Alpha-4 is a subunit of laminin-8 (laminin-411), laminin-9 (laminin-421) and laminin-14 (laminin-423).
Subcellular location. Secreted. Extracellular space. Extracellular matrix. Basement membrane.
Tissue specificity. Detected in placenta (at protein level). Detected in fibroblasts and urine (at protein level). In adult, strong expression in heart, lung, ovary small and large intestines, placenta, liver; weak or no expression in skeletal muscle, kidney, pancreas, testis, prostate, brain. High expression in fetal lung and kidney. Expression in fetal and newborn tissues is observed in certain mesenchymal cells in tissues such as smooth muscle and dermis.
Disease relevance. Cardiomyopathy, dilated, 1JJ (CMD1JJ) [MIM:615235] A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The alpha-helical domains I and II are thought to interact with other laminin chains to form a coiled coil structure. Domain G is globular.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q16363-1 | 1 | yes |
| Q16363-2 | 2 | |
| Q16363-3 | 3 |
RefSeq proteins (5): NP_001098676, NP_001098677, NP_001098678, NP_001098679, NP_002281 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000742 | EGF | Domain |
| IPR001791 | Laminin_G | Domain |
| IPR002049 | LE_dom | Domain |
| IPR009254 | Laminin_aI | Domain |
| IPR010307 | Laminin_dom_II | Domain |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR050372 | Neurexin-related_CASP | Family |
| IPR056863 | LMN_ATRN_NET-like_EGF | Domain |
Pfam: PF00053, PF02210, PF06008, PF06009, PF24973
UniProt features (74 total): glycosylation site 20, disulfide bond 19, sequence variant 10, domain 9, coiled-coil region 5, splice variant 3, sequence conflict 3, region of interest 2, signal peptide 1, chain 1, short sequence motif 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q16363-F1 | 73.75 | 0.18 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (19): 82–91, 84–98, 101–110, 113–129, 132–146, 134–155, 157–166, 169–184, 187–202, 189–209, 212–221, 224–238, 273, 276, 1005–1035, 1201–1227, 1370–1402, 1617–1640, 1792–1820
Glycosylation sites (20): 39, 104, 215, 315, 465, 531, 557, 578, 581, 638, 646, 742, 758, 761, 787, 810, 1093, 1288, 1366, 1418
Function
Pathways and Gene Ontology
Reactome pathways
12 pathways
| ID | Pathway |
|---|---|
| R-HSA-3000157 | Laminin interactions |
| R-HSA-3000171 | Non-integrin membrane-ECM interactions |
| R-HSA-3000178 | ECM proteoglycans |
| R-HSA-8874081 | MET activates PTK2 signaling |
| R-HSA-9638630 | Attachment of bacteria to epithelial cells |
| R-HSA-9913351 | Formation of the dystrophin-glycoprotein complex (DGC) |
| R-HSA-9925563 | Developmental Lineage of Pancreatic Ductal Cells |
| R-HSA-1474244 | Extracellular matrix organization |
| R-HSA-162582 | Signal Transduction |
| R-HSA-6806834 | Signaling by MET |
| R-HSA-8875878 | MET promotes cell motility |
| R-HSA-9006934 | Signaling by Receptor Tyrosine Kinases |
MSigDB gene sets: 687 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_DN, GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_DN, GSE45365_NK_CELL_VS_CD8A_DC_UP, WAMUNYOKOLI_OVARIAN_CANCER_LMP_DN, LI_CISPLATIN_RESISTANCE_DN, AP1_01, JI_RESPONSE_TO_FSH_UP, TSENG_IRS1_TARGETS_UP, XU_GH1_AUTOCRINE_TARGETS_UP, GOBP_FORMATION_OF_PRIMARY_GERM_LAYER, JAEGER_METASTASIS_DN, LI_PROSTATE_CANCER_EPIGENETIC, MODULE_493, SCHLESINGER_METHYLATED_DE_NOVO_IN_CANCER, TOMLINS_PROSTATE_CANCER_DN
GO Biological Process (5): cell adhesion (GO:0007155), regulation of cell adhesion (GO:0030155), regulation of cell migration (GO:0030334), regulation of embryonic development (GO:0045995), negative regulation of cold-induced thermogenesis (GO:0120163)
GO Molecular Function (3): signaling receptor binding (GO:0005102), extracellular matrix structural constituent (GO:0005201), protein binding (GO:0005515)
GO Cellular Component (5): extracellular region (GO:0005576), basement membrane (GO:0005604), extracellular matrix (GO:0031012), extracellular exosome (GO:0070062), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-8 pathways:
| Category | Pathways |
|---|---|
| Extracellular matrix organization | 3 |
| MET promotes cell motility | 1 |
| Biofilm formation | 1 |
| Non-integrin membrane-ECM interactions | 1 |
| Developmental Cell Lineages of the Exocrine Pancreas | 1 |
| Signaling by Receptor Tyrosine Kinases | 1 |
| Signaling by MET | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| extracellular matrix | 2 |
| cellular anatomical structure | 2 |
| cellular process | 1 |
| cell adhesion | 1 |
| regulation of cellular process | 1 |
| cell migration | 1 |
| regulation of cell motility | 1 |
| embryo development | 1 |
| regulation of multicellular organismal development | 1 |
| negative regulation of multicellular organismal process | 1 |
| cold-induced thermogenesis | 1 |
| regulation of cold-induced thermogenesis | 1 |
| protein binding | 1 |
| structural molecule activity | 1 |
| binding | 1 |
| external encapsulating structure | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
2594 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LAMA4 | LAMB3 | Q13751 | 983 |
| LAMA4 | LAMC2 | Q13753 | 982 |
| LAMA4 | LAMB1 | P07942 | 920 |
| LAMA4 | COL17A1 | Q9UMD9 | 853 |
| LAMA4 | LAMC1 | P11047 | 818 |
| LAMA4 | ITGB1 | P05556 | 804 |
| LAMA4 | FN1 | P02751 | 793 |
| LAMA4 | ITGA6 | P23229 | 783 |
| LAMA4 | ITGB4 | P16144 | 767 |
| LAMA4 | MCAM | P43121 | 732 |
| LAMA4 | COL4A2 | P08572 | 730 |
| LAMA4 | ME1 | P48163 | 728 |
| LAMA4 | COL4A1 | P02462 | 725 |
| LAMA4 | ITGA7 | Q13683 | 682 |
| LAMA4 | IGBP1 | P78318 | 656 |
IntAct
41 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MCAM | CNTN1 | psi-mi:“MI:0914”(association) | 0.750 |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| HADHA | AGRN | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS1 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS3 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| TP53 | LAMA4 | psi-mi:“MI:2364”(proximity) | 0.520 |
| DAG1 | LAMA4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| LAMA4 | RTN4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ATF7IP | LAMA4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| TNIP1 | COCH | psi-mi:“MI:0914”(association) | 0.350 |
| TNIP2 | TMEM178B | psi-mi:“MI:0914”(association) | 0.350 |
| CCN1 | psi-mi:“MI:0914”(association) | 0.350 | |
| LGALS8 | SLC22A23 | psi-mi:“MI:0914”(association) | 0.350 |
| CCL3 | KRBA1 | psi-mi:“MI:0914”(association) | 0.350 |
| NID2 | AGRN | psi-mi:“MI:0914”(association) | 0.350 |
| MANEA | AGRN | psi-mi:“MI:0914”(association) | 0.350 |
| LGALS9 | PODXL | psi-mi:“MI:0914”(association) | 0.350 |
| BCAM | TNPO2 | psi-mi:“MI:0914”(association) | 0.350 |
| PILRA | NID2 | psi-mi:“MI:0914”(association) | 0.350 |
| CDH5 | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CDH5 | MYO1C | psi-mi:“MI:2364”(proximity) | 0.270 |
| LAMA4 | psi-mi:“MI:0915”(physical association) | 0.000 | |
| APC | LAMA4 | psi-mi:“MI:0915”(physical association) | 0.000 |
| FHL1 | LAMA4 | psi-mi:“MI:0915”(physical association) | 0.000 |
| LAMA4 | EEF1A1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| BRD7 | LAMA4 | psi-mi:“MI:0915”(physical association) | 0.000 |
| LAMA4 | MED31 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (53): LAMA4 (Affinity Capture-MS), LAMA4 (Affinity Capture-MS), LAMA4 (Affinity Capture-MS), LAMA4 (Affinity Capture-MS), LAMA4 (Affinity Capture-MS), LAMA4 (Co-localization), LAMA4 (Affinity Capture-MS), LAMA4 (Affinity Capture-MS), LAMA4 (Affinity Capture-MS), LAMA4 (Affinity Capture-MS), LAMA4 (Affinity Capture-MS), LAMA4 (Affinity Capture-MS), LAMA4 (Affinity Capture-MS), LAMA4 (Affinity Capture-MS), LAMA4 (Affinity Capture-MS)
ESM2 similar proteins: A2VE53, A5PJQ2, A5PMY6, A6H6E2, A6QP79, A8WGB1, F1QC17, O35550, O35551, O70340, O75071, O94901, P21757, P21758, P30204, P47970, P47971, P47972, P97738, P97927, Q05585, Q07065, Q15276, Q15818, Q16363, Q2LK54, Q3MI99, Q4V885, Q5EAJ6, Q5KU26, Q5RFW0, Q5RI56, Q62443, Q6AZY7, Q6P132, Q6P402, Q6ZMJ2, Q70UQ0, Q8BGQ6, Q8BMK4
Diamond homologs: A0JP86, A2ASQ1, G5ECE3, O00468, O00634, O09118, O15230, O75445, O75882, O95631, P02468, P11047, P15215, P19137, P24043, P25304, P25391, P31696, P34710, P97927, Q00174, Q01635, Q13751, Q13753, Q16363, Q16787, Q18823, Q19981, Q1LVF0, Q24567, Q24568, Q27262, Q2HXW4, Q2QI47, Q5RB89, Q5VV63, Q60675, Q61001, Q61087, Q61092
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| LAMA4 | “form complex” | Laminin-9 | binding |
| LAMA4 | “form complex” | Laminin-8 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 45 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| positive regulation of cell migration | 7 | 10.3× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
4541 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 126 |
| Likely pathogenic | 137 |
| Uncertain significance | 1857 |
| Likely benign | 1795 |
| Benign | 278 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1047960 | NM_198129.4(LAMA3):c.6319-1G>T | Pathogenic |
| 1047961 | NM_198129.4(LAMA3):c.6348_6352delinsCTGGCAAGA (p.Glu2117fs) | Pathogenic |
| 1047962 | NM_198129.4(LAMA3):c.9856G>T (p.Ala3286Ser) | Pathogenic |
| 1068548 | NM_198129.4(LAMA3):c.6469G>T (p.Glu2157Ter) | Pathogenic |
| 1069997 | NM_198129.4(LAMA3):c.5622_5635del (p.Leu1874fs) | Pathogenic |
| 1070832 | NM_198129.4(LAMA3):c.8145T>A (p.Tyr2715Ter) | Pathogenic |
| 1070853 | NC_000018.9:g.(?21478692)(21479039_?)del | Pathogenic |
| 1071930 | NM_198129.4(LAMA3):c.6100A>T (p.Lys2034Ter) | Pathogenic |
| 1071950 | NM_198129.4(LAMA3):c.9887G>A (p.Trp3296Ter) | Pathogenic |
| 1072339 | NM_198129.4(LAMA3):c.5394T>A (p.Cys1798Ter) | Pathogenic |
| 1072501 | NM_198129.4(LAMA3):c.6847_6854del (p.Ala2283fs) | Pathogenic |
| 1074803 | NC_000018.9:g.(?21484507)(21485598_?)del | Pathogenic |
| 1075696 | NM_198129.4(LAMA3):c.5568dup (p.Leu1857fs) | Pathogenic |
| 1252054 | NM_198129.4(LAMA3):c.8302C>T (p.Arg2768Ter) | Pathogenic |
| 1321416 | NM_198129.4(LAMA3):c.7204C>T (p.Arg2402Ter) | Pathogenic |
| 1323177 | NM_198129.4(LAMA3):c.5000_5003del (p.Gly1667fs) | Pathogenic |
| 1323178 | NM_198129.4(LAMA3):c.8087_8090delinsTGC (p.Asn2696fs) | Pathogenic |
| 1350464 | NM_198129.4(LAMA3):c.9617T>G (p.Leu3206Ter) | Pathogenic |
| 1361060 | NM_198129.4(LAMA3):c.9893C>A (p.Ser3298Ter) | Pathogenic |
| 1369957 | NM_198129.4(LAMA3):c.8755A>T (p.Lys2919Ter) | Pathogenic |
| 1371125 | NM_198129.4(LAMA3):c.7738del (p.Thr2580fs) | Pathogenic |
| 1379401 | NM_198129.4(LAMA3):c.5137G>T (p.Glu1713Ter) | Pathogenic |
| 1400822 | NM_198129.4(LAMA3):c.9236dup (p.Arg3081fs) | Pathogenic |
| 1404615 | NM_198129.4(LAMA3):c.5728C>T (p.Gln1910Ter) | Pathogenic |
| 1412135 | NM_198129.4(LAMA3):c.5992G>T (p.Glu1998Ter) | Pathogenic |
| 1412583 | NM_198129.4(LAMA3):c.6778G>T (p.Glu2260Ter) | Pathogenic |
| 1417958 | NM_198129.4(LAMA3):c.8284del (p.Glu2762fs) | Pathogenic |
| 1422229 | NM_198129.4(LAMA3):c.8911C>T (p.Gln2971Ter) | Pathogenic |
| 1422425 | NM_198129.4(LAMA3):c.6199C>T (p.Gln2067Ter) | Pathogenic |
| 1441309 | NM_198129.4(LAMA3):c.5119C>T (p.Gln1707Ter) | Pathogenic |
SpliceAI
6475 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:112109581:TT:T | acceptor_gain | 1.0000 |
| 6:112109582:TC:T | acceptor_loss | 1.0000 |
| 6:112109583:C:A | acceptor_loss | 1.0000 |
| 6:112109593:C:CT | acceptor_gain | 1.0000 |
| 6:112109594:A:T | acceptor_gain | 1.0000 |
| 6:112114071:CTTA:C | donor_loss | 1.0000 |
| 6:112114072:TTAC:T | donor_loss | 1.0000 |
| 6:112114073:TACC:T | donor_loss | 1.0000 |
| 6:112114074:ACC:A | donor_loss | 1.0000 |
| 6:112114075:C:A | donor_loss | 1.0000 |
| 6:112114193:TAA:T | acceptor_gain | 1.0000 |
| 6:112114196:C:CC | acceptor_gain | 1.0000 |
| 6:112114201:A:AC | acceptor_gain | 1.0000 |
| 6:112114659:TCA:T | donor_loss | 1.0000 |
| 6:112114660:CACCT:C | donor_loss | 1.0000 |
| 6:112114661:A:C | donor_loss | 1.0000 |
| 6:112114662:C:CA | donor_loss | 1.0000 |
| 6:112114753:TGAC:T | acceptor_gain | 1.0000 |
| 6:112114757:C:CC | acceptor_gain | 1.0000 |
| 6:112114758:T:A | acceptor_loss | 1.0000 |
| 6:112115895:C:CA | donor_gain | 1.0000 |
| 6:112117751:ATCCT:A | donor_gain | 1.0000 |
| 6:112119152:TTAC:T | donor_loss | 1.0000 |
| 6:112119154:A:AG | donor_loss | 1.0000 |
| 6:112119308:TCAC:T | acceptor_gain | 1.0000 |
| 6:112119309:CACC:C | acceptor_gain | 1.0000 |
| 6:112119310:ACCTG:A | acceptor_loss | 1.0000 |
| 6:112119311:CCTG:C | acceptor_loss | 1.0000 |
| 6:112119313:T:A | acceptor_loss | 1.0000 |
| 6:112120281:A:AC | donor_gain | 1.0000 |
AlphaMissense
12090 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:112109535:A:G | C1792R | 0.999 |
| 6:112114676:C:A | W1731C | 0.999 |
| 6:112114676:C:G | W1731C | 0.999 |
| 6:112201641:C:G | C157S | 0.999 |
| 6:112201642:A:T | C157S | 0.999 |
| 6:112109450:C:G | C1820S | 0.998 |
| 6:112109451:A:G | C1820R | 0.998 |
| 6:112109451:A:T | C1820S | 0.998 |
| 6:112109534:C:G | C1792S | 0.998 |
| 6:112109535:A:T | C1792S | 0.998 |
| 6:112114087:C:T | G1772E | 0.998 |
| 6:112114195:A:T | V1736D | 0.998 |
| 6:112114678:A:G | W1731R | 0.998 |
| 6:112114678:A:T | W1731R | 0.998 |
| 6:112115945:C:G | R1677P | 0.998 |
| 6:112122053:C:G | R1479P | 0.998 |
| 6:112139811:G:C | S1017R | 0.998 |
| 6:112139811:G:T | S1017R | 0.998 |
| 6:112139813:T:G | S1017R | 0.998 |
| 6:112191749:C:G | C202S | 0.998 |
| 6:112191750:A:T | C202S | 0.998 |
| 6:112191803:C:G | C184S | 0.998 |
| 6:112191804:A:T | C184S | 0.998 |
| 6:112191848:C:G | C169S | 0.998 |
| 6:112191849:A:T | C169S | 0.998 |
| 6:112201613:A:C | C166W | 0.998 |
| 6:112201614:C:A | C166F | 0.998 |
| 6:112201614:C:G | C166S | 0.998 |
| 6:112201614:C:T | C166Y | 0.998 |
| 6:112201615:A:T | C166S | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000047452 (6:112222957 A>G), RS1000064484 (6:112129778 C>T), RS1000099053 (6:112174602 C>G), RS1000108408 (6:112216935 C>A), RS1000136128 (6:112156829 A>G), RS1000176610 (6:112233815 A>G,T), RS1000183895 (6:112206738 A>G), RS1000208755 (6:112250017 G>A,T), RS1000223880 (6:112147477 T>C), RS1000242629 (6:112109882 T>C), RS1000250929 (6:112157087 C>T), RS1000309173 (6:112243204 G>C,T), RS1000361076 (6:112149964 A>G), RS1000383232 (6:112243415 A>G), RS1000456661 (6:112137047 A>T)
Disease associations
OMIM: gene MIM:600133 | disease phenotypes: MIM:615235, MIM:226650, MIM:226700, MIM:245660, MIM:619783, MIM:619784, MIM:192600, MIM:600996, MIM:604772, MIM:194200, MIM:302045, MIM:607346, MIM:616399, MIM:608583, MIM:178500, MIM:601144
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| laryngo-onycho-cutaneous syndrome | Definitive | Autosomal recessive |
| junctional epidermolysis bullosa | Definitive | Autosomal recessive |
| dilated cardiomyopathy 1JJ | Strong | Autosomal dominant |
| junctional epidermolysis bullosa, non-Herlitz type | Strong | Autosomal recessive |
| junctional epidermolysis bullosa Herlitz type | Strong | Autosomal recessive |
| epidermolysis bullosa, junctional 2A, intermediate | Strong | Autosomal recessive |
| epidermolysis bullosa, junctional 2B, severe | Strong | Autosomal recessive |
| generalized junctional epidermolysis bullosa non-Herlitz type | Supportive | Autosomal recessive |
| familial isolated dilated cardiomyopathy | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| dilated cardiomyopathy 1JJ | Limited | AD |
Mondo (25): dilated cardiomyopathy 1JJ (MONDO:0014095), junctional epidermolysis bullosa, non-Herlitz type (MONDO:0009180), junctional epidermolysis bullosa (MONDO:0017612), junctional epidermolysis bullosa Herlitz type (MONDO:0009182), laryngo-onycho-cutaneous syndrome (MONDO:0009513), epidermolysis bullosa, junctional 2A, intermediate (MONDO:0030746), epidermolysis bullosa, junctional 2B, severe (MONDO:0030747), cardiomyopathy (MONDO:0004994), dilated cardiomyopathy (MONDO:0005021), arrhythmogenic right ventricular cardiomyopathy (MONDO:0016587), familial hypertrophic cardiomyopathy (MONDO:0024573), catecholaminergic polymorphic ventricular tachycardia 1 (MONDO:0011484), Wolff-Parkinson-White syndrome (MONDO:0008685), dilated cardiomyopathy 3B (MONDO:0010542), hypertrophic cardiomyopathy (MONDO:0005045)
Orphanet (21): Familial isolated dilated cardiomyopathy (Orphanet:154), Localized junctional epidermolysis bullosa (Orphanet:251393), Intermediate generalized junctional epidermolysis bullosa (Orphanet:79402), Junctional epidermolysis bullosa inversa (Orphanet:79405), OBSOLETE: Junctional epidermolysis bullosa, non-Herlitz type (Orphanet:89840), Junctional epidermolysis bullosa (Orphanet:305), Laryngo-onycho-cutaneous syndrome (Orphanet:2407), Severe generalized junctional epidermolysis bullosa (Orphanet:79404), Rare cardiomyopathy (Orphanet:167848), Dilated cardiomyopathy (Orphanet:217604), Inherited arrhythmogenic cardiomyopathy (Orphanet:247), Rare familial disorder with hypertrophic cardiomyopathy (Orphanet:99739), Catecholaminergic polymorphic ventricular tachycardia (Orphanet:3286), Rare hypertrophic cardiomyopathy (Orphanet:217569), Brugada syndrome (Orphanet:130)
HPO phenotypes
18 total (20 of 18 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000969 | Edema |
| HP:0001635 | Congestive heart failure |
| HP:0001644 | Dilated cardiomyopathy |
| HP:0001727 | Thromboembolic stroke |
| HP:0002875 | Exertional dyspnea |
| HP:0003198 | Myopathy |
| HP:0003457 | EMG abnormality |
| HP:0003584 | Late onset |
| HP:0003596 | Middle age onset |
| HP:0011462 | Young adult onset |
| HP:0011675 | Arrhythmia |
| HP:0012378 | Fatigue |
| HP:0012664 | Reduced left ventricular ejection fraction |
| HP:0012764 | Orthopnea |
| HP:0025169 | Left ventricular systolic dysfunction |
| HP:0100578 | Lipoatrophy |
| HP:0001716 | Wolff-Parkinson-White syndrome |
| HP:0001639 | Hypertrophic cardiomyopathy |
GWAS associations
16 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001664_14 | Amyotrophic lateral sclerosis | 7.000000e-07 |
| GCST002550_24 | Allergic rhinitis | 4.000000e-07 |
| GCST004611_138 | High light scatter reticulocyte count | 6.000000e-09 |
| GCST004612_87 | High light scatter reticulocyte percentage of red cells | 4.000000e-09 |
| GCST008103_72 | Bipolar disorder | 8.000000e-07 |
| GCST008570_7 | Composite immunoglobulin trait (IgA x IgG/IgM) | 4.000000e-07 |
| GCST009391_29 | Metabolite levels | 3.000000e-06 |
| GCST90020024_592 | A body shape index | 2.000000e-08 |
| GCST90020024_593 | A body shape index | 9.000000e-12 |
| GCST90020024_594 | A body shape index | 3.000000e-08 |
| GCST90020025_1082 | Waist-to-hip ratio adjusted for BMI | 1.000000e-10 |
| GCST90020025_1083 | Waist-to-hip ratio adjusted for BMI | 3.000000e-08 |
| GCST90020027_1107 | Waist-hip index | 1.000000e-10 |
| GCST90020027_1108 | Waist-hip index | 4.000000e-08 |
| GCST90020029_1418 | Waist circumference adjusted for body mass index | 3.000000e-09 |
| GCST90020029_1419 | Waist circumference adjusted for body mass index | 2.000000e-12 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007986 | reticulocyte count |
| EFO:0010350 | cholesteryl ester 22:6 measurement |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
MeSH disease descriptors (15)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D019571 | Arrhythmogenic Right Ventricular Dysplasia | C14.240.400.145; C14.280.238.028; C14.280.400.145; C16.131.240.400.145 |
| D053840 | Brugada Syndrome | C14.280.067.322; C14.280.123.250; C16.320.100 |
| D009202 | Cardiomyopathies | C14.280.238 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| D024741 | Cardiomyopathy, Hypertrophic, Familial | C14.280.238.100.500; C14.280.484.048.750.070.160.500; C16.320.160 |
| D016109 | Epidermolysis Bullosa, Junctional | C16.131.831.493.170; C16.320.850.275.170; C17.800.804.493.170; C17.800.827.275.170; C17.800.865.410.170 |
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
| D017180 | Tachycardia, Ventricular | C14.280.067.845.940; C14.280.123.875.940; C23.550.073.845.940 |
| D014927 | Wolff-Parkinson-White Syndrome | C14.280.067.780.977; C14.280.123.750.977; C16.131.240.400.980 |
| C563409 | Arrhythmogenic Right Ventricular Dysplasia, Familial, 2 (supp.) | |
| C580047 | Dmd-Associated Dilated Cardiomyopathy (supp.) | |
| C537032 | Laryngo onycho cutaneous syndrome (supp.) | |
| C537198 | Spinocerebellar ataxia 19 (supp.) | |
| C542540 | Spinocerebellar ataxia 22 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2364187 (PROTEIN COMPLEX GROUP)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
80 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, increases methylation, decreases expression, increases expression | 4 |
| trichostatin A | increases expression, affects cotreatment | 3 |
| sodium arsenite | affects methylation, decreases expression, increases abundance, increases expression | 3 |
| Estradiol | decreases expression, affects expression, affects cotreatment | 3 |
| methylmercuric chloride | decreases expression, increases expression | 2 |
| cobaltous chloride | decreases secretion, decreases expression | 2 |
| belinostat | increases expression, affects cotreatment | 2 |
| Troglitazone | increases expression | 2 |
| Vorinostat | affects cotreatment, increases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Benzo(a)pyrene | increases expression, increases methylation | 2 |
| Doxorubicin | increases expression | 2 |
| Endosulfan | decreases expression | 2 |
| Progesterone | affects cotreatment, decreases expression, increases expression | 2 |
| Tobacco Smoke Pollution | increases expression, affects expression | 2 |
| Valproic Acid | affects expression, increases expression | 2 |
| Aflatoxin B1 | increases methylation, increases expression | 2 |
| bisphenol F | increases expression | 1 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| geldanamycin | increases expression | 1 |
| 2,4,6-tribromophenol | increases expression | 1 |
| testosterone enanthate | affects expression | 1 |
| propionaldehyde | decreases expression | 1 |
| pirinixic acid | increases activity, increases expression, affects binding | 1 |
| methylselenic acid | increases expression | 1 |
| decabromobiphenyl ether | increases expression | 1 |
| ethyl-p-hydroxybenzoate | increases expression | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| tetrabromobisphenol A | increases expression | 1 |
| N-acetyl-4-benzoquinoneimine | affects response to substance | 1 |
Cellosaurus cell lines
2 cell lines: 2 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D9I8 | Ubigene HEK293 LAMA4 KO | Transformed cell line | Female |
| CVCL_RY71 | HEK293 rLN8 | Transformed cell line | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00348530 | PHASE4 | UNKNOWN | Carvedilol Versus Verapamil in Chronic Heart Failure Secondary to Non-Ischemic Cardiomyopathy |
| NCT00371891 | PHASE4 | COMPLETED | Ontario Multidetector Computed Tomographic (MDCT) Coronary Angiography Study (OMCAS) |
| NCT00401856 | PHASE4 | COMPLETED | CMR to Assess Fibrosis in Cardiomyopathy Using Eplerenone |
| NCT00559338 | PHASE4 | COMPLETED | Impact of Nesiritide Infusion for Decompensated Heart Failure in the Emergency Department |
| NCT00606775 | PHASE4 | UNKNOWN | The Preventive Efficacy of Carvedilol on Cardiac Dysfunction in Duchenne Muscular Dystrophy |
| NCT00658203 | PHASE4 | COMPLETED | Clinical Evaluation on Advanced Resynchronization |
| NCT00701220 | PHASE4 | COMPLETED | Statin Therapy for Ischemic and Nonischemic Cardiomyopathy |
| NCT00800761 | PHASE4 | COMPLETED | Intensive Combined Chelation Therapy for Iron-Induced Cardiac Disease in Patients With Thalassemia Major |
| NCT00806390 | PHASE4 | TERMINATED | Prevention of Anthracycline or Trastuzumab Induced Cardiomyopathy by Metoprolol |
| NCT01006473 | PHASE4 | COMPLETED | Exercise Training in Chagas Cardiomyopathy |
| NCT01261065 | PHASE4 | COMPLETED | Mechanisms of Improvement With Beta-Blocker Treatment in Heart Failure |
| NCT01345188 | PHASE4 | COMPLETED | Ranolazine in Ischemic Cardiomyopathy |
| NCT01868841 | PHASE4 | COMPLETED | 123-I mIBG (AdreView) Heart-to-Mediastinal (H/M) Ratio and SPECT Imaging on a Small Field of View-High Efficiency Cardiac SPECT System |
| NCT02640846 | PHASE4 | UNKNOWN | Effects of Levosimendan, Milrinone and Norepinephrine on Left and Right Ventricular Function in Septic Shock |
| NCT03228823 | PHASE4 | UNKNOWN | Prospective Assessment of Premature Ventricular Contractions Suppression in Cardiomyopathy(PAPS) |
| NCT04323852 | PHASE4 | COMPLETED | Can Vitamin D Reduce Heart Muscle Damage After Bypass Surgery? |
| NCT05034432 | PHASE4 | RECRUITING | The PIVATAL Study -Study of Ventricular Arrhythmia (VTA) Ablation in Left Ventricular Assist Device (LVAD) Patients |
| NCT05718128 | PHASE4 | RECRUITING | Clinical Study of Endocardial Myocardial Biopsy |
| NCT06964464 | PHASE4 | RECRUITING | Comparative Effectiveness of Carvedilol Versus Metoprolol Succinate in Heart Failure Patients With an Implantable Cardioverter Defibrillator |
| NCT00587223 | PHASE3 | TERMINATED | Safety and Efficacy of Apligraf in Nonhealing Wounds of Subjects With Junctional or Dystrophic Epidermolysis Bullosa (EB) |
| NCT06917690 | PHASE3 | RECRUITING | A Study to Learn About the Safety and Efficacy of the Drug Oleogel-S10 in Japanese Patients With Epidermolysis Bullosa |
| NCT00170183 | PHASE3 | COMPLETED | Brain Natriuretic Peptide (BNP) to Preserve Renal Function in Hospitalized Patients With Heart Failure |
| NCT00270387 | PHASE3 | COMPLETED | A Study of Short-Term Outcomes and Economic Impact For Patients With Worsening Congestive Heart Failure When Natrecor (Nesiritide) is Added to Standard-Care Therapy, Compared to Administration of Placebo With Standard-Care Therapy |
| NCT00321295 | PHASE3 | COMPLETED | Biventricular Pacing In Patients With Left Ventricular Dysfunction After Cardiovascular Surgery |
| NCT00483197 | PHASE3 | UNKNOWN | VentrAssistTM LVAD as a Bridge to Cardiac Transplantation - Pivotal Trial |
| NCT00490321 | PHASE3 | UNKNOWN | VentrAssistTM LVAD for the Treatment of Advanced Heart Failure - Destination Therapy |
| NCT00626028 | PHASE3 | COMPLETED | Comparison of Inhaled Nitric Oxide and Oxygen in Participants Reactivity During Acute Pulmonary Vasodilator Testing |
| NCT01013714 | PHASE3 | UNKNOWN | Cardiac Sympathetic Denervation for Prevention of Ventricular Tachyarrhythmias |
| NCT01217827 | PHASE3 | COMPLETED | Implantable Cardioverter-Defibrillator Use in the VA System |
| NCT01648634 | PHASE3 | COMPLETED | Nebivolol for the Prevention of Left Ventricular Systolic Dysfunction in Patients With Duchenne Muscular Dystrophy |
| NCT02924285 | PHASE3 | COMPLETED | Catheter Ablation Versus Amiodarone for Therapy of Premature Ventricular Contractions in Patients With Structural Heart Disease |
| NCT03860935 | PHASE3 | COMPLETED | Efficacy and Safety of AG10 in Subjects With Transthyretin Amyloid Cardiomyopathy |
| NCT04166331 | PHASE3 | COMPLETED | Adjunctive DobutAmine in sePtic Cardiomyopathy With Tissue Hypoperfusion |
| NCT05175066 | PHASE3 | COMPLETED | Bisoprolol Administration to Prevent Anthracycline-induced Cardiotoxicity |
| NCT05237323 | PHASE3 | COMPLETED | Micophenolate Mofetil Versus Azathioprine in Myocarditis |
| NCT06158698 | PHASE3 | RECRUITING | CMP-MYTHiC Trial and Registry - CardioMyoPathy With MYocarditis THerapy With Colchicine |
| NCT06563895 | PHASE3 | RECRUITING | Acoramidis Transthyretin Amyloidosis Prevention Trial in the Young (ACT-EARLY) Study in Asymptomatic Carriers of a Pathogenic TTR Variant |
| NCT06846086 | PHASE3 | RECRUITING | Cardioprotective Effects of Melatonin in Patients With Cardiomyopathy |
| NCT07116473 | PHASE3 | NOT_YET_RECRUITING | To Evaluate the Long-term Safety and Tolerability of Acoramidis in Participants With Newly Diagnosed ATTR-CM (ACT-EARLY OLE) |
| NCT03578029 | PHASE2 | TERMINATED | Evaluation of the Safety and Efficacy Study of RGN-137 Topical Gel for Junctional and Dystrophic Epidermolysis Bullosa |
Related Atlas pages
- Associated diseases: dilated cardiomyopathy 1JJ, junctional epidermolysis bullosa, non-Herlitz type, junctional epidermolysis bullosa Herlitz type, laryngo-onycho-cutaneous syndrome, junctional epidermolysis bullosa, generalized junctional epidermolysis bullosa non-Herlitz type, familial isolated dilated cardiomyopathy, epidermolysis bullosa, junctional 2A, intermediate, epidermolysis bullosa, junctional 2B, severe
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): arrhythmogenic right ventricular cardiomyopathy, Brugada syndrome, Brugada syndrome 9, catecholaminergic polymorphic ventricular tachycardia 1, dilated cardiomyopathy 1JJ, dilated cardiomyopathy 3B, epidermolysis bullosa, junctional 2A, intermediate, epidermolysis bullosa, junctional 2B, severe, familial atrial fibrillation, familial hypertrophic cardiomyopathy, generalized junctional epidermolysis bullosa non-Herlitz type, hypertrophic cardiomyopathy 1, interstitial lung disease 2, junctional epidermolysis bullosa, junctional epidermolysis bullosa Herlitz type, junctional epidermolysis bullosa, non-Herlitz type, laryngo-onycho-cutaneous syndrome, spinocerebellar ataxia type 19/22, ventricular tachycardia, Wolff-Parkinson-White syndrome