LAMA5
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Summary
LAMA5 (laminin subunit alpha 5, HGNC:6485) is a protein-coding gene on chromosome 20q13.33, encoding Laminin subunit alpha-5 (O15230). Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
This gene encodes one of the vertebrate laminin alpha chains. Laminins, a family of extracellular matrix glycoproteins, are the major noncollagenous constituent of basement membranes. They have been implicated in a wide variety of biological processes including cell adhesion, differentiation, migration, signaling, neurite outgrowth and metastasis. Laminins are composed of 3 non identical chains: laminin alpha, beta and gamma (formerly A, B1, and B2, respectively) and they form a cruciform structure consisting of 3 short arms, each formed by a different chain, and a long arm composed of all 3 chains. Each laminin chain is a multidomain protein encoded by a distinct gene. The protein encoded by this gene is the alpha-5 subunit of of laminin-10 (laminin-511), laminin-11 (laminin-521) and laminin-15 (laminin-523).
Source: NCBI Gene 3911 — RefSeq curated summary.
At a glance
- Gene–disease (curated): LAMA5-related multisystemic syndrome (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 10
- Clinical variants (ClinVar): 2,360 total — 8 pathogenic, 16 likely-pathogenic
- Phenotypes (HPO): 53
- Druggable target: yes
- MANE Select transcript:
NM_005560
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6485 |
| Approved symbol | LAMA5 |
| Name | laminin subunit alpha 5 |
| Location | 20q13.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000130702 |
| Ensembl biotype | protein_coding |
| OMIM | 601033 |
| Entrez | 3911 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 8 retained_intron, 3 protein_coding_CDS_not_defined, 2 protein_coding, 1 nonsense_mediated_decay
ENST00000252999, ENST00000370677, ENST00000370691, ENST00000462415, ENST00000464134, ENST00000468786, ENST00000471042, ENST00000474128, ENST00000481120, ENST00000491036, ENST00000492698, ENST00000495695, ENST00000497053, ENST00000497363
RefSeq mRNA: 1 — MANE Select: NM_005560
NM_005560
CCDS: CCDS33502
Canonical transcript exons
ENST00000252999 — 80 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000897388 | 62310419 | 62310572 |
| ENSE00000897441 | 62312888 | 62313010 |
| ENSE00001591530 | 62316882 | 62317023 |
| ENSE00001596708 | 62332557 | 62332717 |
| ENSE00001617270 | 62333090 | 62333243 |
| ENSE00001622903 | 62366949 | 62367312 |
| ENSE00001624779 | 62319684 | 62319795 |
| ENSE00001628519 | 62320559 | 62320669 |
| ENSE00001630917 | 62329138 | 62329253 |
| ENSE00001633945 | 62315028 | 62315207 |
| ENSE00001635743 | 62316671 | 62316773 |
| ENSE00001637463 | 62328844 | 62329055 |
| ENSE00001639303 | 62327529 | 62327669 |
| ENSE00001646359 | 62322019 | 62322168 |
| ENSE00001653265 | 62318843 | 62319013 |
| ENSE00001655361 | 62338468 | 62338608 |
| ENSE00001658020 | 62331032 | 62331129 |
| ENSE00001668273 | 62330488 | 62330614 |
| ENSE00001671072 | 62338016 | 62338150 |
| ENSE00001673813 | 62317345 | 62317499 |
| ENSE00001679650 | 62323456 | 62323670 |
| ENSE00001684418 | 62325316 | 62325546 |
| ENSE00001686341 | 62333901 | 62334039 |
| ENSE00001690195 | 62314304 | 62314440 |
| ENSE00001690936 | 62322269 | 62322449 |
| ENSE00001699058 | 62326865 | 62326966 |
| ENSE00001700939 | 62327866 | 62328010 |
| ENSE00001703467 | 62328241 | 62328445 |
| ENSE00001718334 | 62309065 | 62309475 |
| ENSE00001721911 | 62318454 | 62318650 |
| ENSE00001732494 | 62320739 | 62320890 |
| ENSE00001736657 | 62326677 | 62326760 |
| ENSE00001742713 | 62333375 | 62333481 |
| ENSE00001743768 | 62337590 | 62337727 |
| ENSE00001753363 | 62314555 | 62314725 |
| ENSE00001756290 | 62330743 | 62330944 |
| ENSE00001757654 | 62338232 | 62338369 |
| ENSE00001761863 | 62317662 | 62317778 |
| ENSE00001763595 | 62329777 | 62329916 |
| ENSE00001767007 | 62337804 | 62337938 |
| ENSE00001771710 | 62314799 | 62314947 |
| ENSE00001776024 | 62322658 | 62322758 |
| ENSE00001785748 | 62333564 | 62333706 |
| ENSE00001789995 | 62324441 | 62324554 |
| ENSE00001790562 | 62334186 | 62334342 |
| ENSE00001791759 | 62315948 | 62316058 |
| ENSE00001798290 | 62327233 | 62327406 |
| ENSE00001799288 | 62332372 | 62332480 |
| ENSE00003463358 | 62334522 | 62334621 |
| ENSE00003467771 | 62336734 | 62336786 |
| ENSE00003474410 | 62309988 | 62310081 |
| ENSE00003482433 | 62323776 | 62323856 |
| ENSE00003497606 | 62336340 | 62336445 |
| ENSE00003532462 | 62311401 | 62311536 |
| ENSE00003624414 | 62310178 | 62310311 |
| ENSE00003625689 | 62346682 | 62346800 |
| ENSE00003627966 | 62324080 | 62324204 |
| ENSE00003632951 | 62346913 | 62347028 |
| ENSE00003641980 | 62311614 | 62311784 |
| ENSE00003646354 | 62312173 | 62312316 |
| ENSE00003650244 | 62335217 | 62335269 |
| ENSE00003655078 | 62309716 | 62309835 |
| ENSE00003658406 | 62312400 | 62312532 |
| ENSE00003682961 | 62335021 | 62335126 |
| ENSE00003694446 | 62351704 | 62351801 |
| ENSE00003715629 | 62311920 | 62312050 |
| ENSE00003716301 | 62311162 | 62311307 |
| ENSE00003717885 | 62312632 | 62312780 |
| ENSE00003718380 | 62362400 | 62362552 |
| ENSE00003721327 | 62310665 | 62310829 |
| ENSE00003722495 | 62313649 | 62313802 |
| ENSE00003726252 | 62313327 | 62313460 |
| ENSE00003732105 | 62313088 | 62313250 |
| ENSE00003741612 | 62345818 | 62345877 |
| ENSE00003741939 | 62310902 | 62311094 |
| ENSE00003745466 | 62351909 | 62352079 |
| ENSE00003747809 | 62346506 | 62346596 |
| ENSE00003748883 | 62353134 | 62353251 |
| ENSE00003751511 | 62352242 | 62352360 |
| ENSE00003751879 | 62346081 | 62346215 |
Expression profiles
Bgee: expression breadth ubiquitous, 264 present calls, max score 99.23.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 30.5355 / max 661.7975, expressed in 1503 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 188260 | 24.8541 | 1463 |
| 188259 | 4.0253 | 1067 |
| 209189 | 1.2895 | 777 |
| 188254 | 0.1881 | 87 |
| 188250 | 0.1786 | 86 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 99.23 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 99.22 | gold quality |
| metanephros cortex | UBERON:0010533 | 99.19 | gold quality |
| right lung | UBERON:0002167 | 99.07 | gold quality |
| right coronary artery | UBERON:0001625 | 99.06 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 99.06 | gold quality |
| popliteal artery | UBERON:0002250 | 99.02 | gold quality |
| tibial artery | UBERON:0007610 | 99.02 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.97 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 98.92 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 98.89 | gold quality |
| mucosa of stomach | UBERON:0001199 | 98.88 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 98.86 | gold quality |
| aorta | UBERON:0000947 | 98.77 | gold quality |
| skin of abdomen | UBERON:0001416 | 98.75 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 98.74 | gold quality |
| lower esophagus | UBERON:0013473 | 98.72 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 98.72 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 98.70 | gold quality |
| left uterine tube | UBERON:0001303 | 98.68 | gold quality |
| left coronary artery | UBERON:0001626 | 98.64 | gold quality |
| apex of heart | UBERON:0002098 | 98.64 | gold quality |
| endocervix | UBERON:0000458 | 98.61 | gold quality |
| skin of leg | UBERON:0001511 | 98.61 | gold quality |
| body of uterus | UBERON:0009853 | 98.61 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 98.58 | gold quality |
| upper lobe of lung | UBERON:0008948 | 98.56 | gold quality |
| ectocervix | UBERON:0012249 | 98.55 | gold quality |
| ascending aorta | UBERON:0001496 | 98.54 | gold quality |
| thoracic aorta | UBERON:0001515 | 98.52 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-10283 | yes | 776.03 |
| E-MTAB-6678 | yes | 16.19 |
| E-ANND-3 | yes | 15.87 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
30 targeting LAMA5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-6891-5P | 99.98 | 66.53 | 1372 |
| HSA-MIR-3173-3P | 99.98 | 66.49 | 1217 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-5003-3P | 99.85 | 69.29 | 2517 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
| HSA-MIR-7856-5P | 99.75 | 69.99 | 2901 |
| HSA-MIR-6745 | 99.74 | 65.33 | 1321 |
| HSA-MIR-4672 | 99.50 | 71.58 | 2893 |
| HSA-MIR-363-5P | 99.46 | 64.51 | 1015 |
| HSA-MIR-4477B | 99.23 | 70.49 | 1733 |
| HSA-MIR-12125 | 98.59 | 67.54 | 1044 |
| HSA-MIR-6516-5P | 98.42 | 70.19 | 1551 |
| HSA-MIR-6773-3P | 98.17 | 65.51 | 1213 |
| HSA-MIR-509-3P | 98.12 | 67.25 | 612 |
| HSA-MIR-216B-5P | 97.16 | 66.76 | 1126 |
| HSA-MIR-6895-5P | 97.05 | 64.96 | 522 |
| HSA-MIR-3914 | 94.91 | 65.77 | 643 |
| HSA-MIR-6879-3P | 93.93 | 64.00 | 759 |
Literature-anchored findings (GeneRIF, showing 40)
- Laminin-10/11 and fibronectin differentially prevent apoptosis induced by serum removal via phosphatidylinositol 3-kinase/Akt- and MEK1/ERK-dependent pathways (Laminin 10; separate entry for Laminin 11). (PMID:11891225)
- LN5 has a role in the differentiation of the tracheal epithelium in human embryos (PMID:12242717)
- LN6 and LN5 have distinct biological activities, but they may cooperatively support cell adhesion (PMID:12379663)
- role for laminin-5 during human embryogenesis, for example, for epithelial cell development, beyond its involvement in hemidesmosome formation and cell adhesion. (PMID:12382139)
- Laminins with alpha1, alph4, and alpha5 chains are compared to determine laminin isoform-specific promotion of adhesion and migration of human bone marrow progenitor cells. (PMID:12393739)
- Our results elucidate a mechanism whereby mesangial cells organize the glomerular capillaries by adhering to the G domain of laminin alpha5 in the glomerular basement membrane. (PMID:12682087)
- Data suggest that this alphavbeta3 binding to alpha5-laminins is involved in the regulation of cellular responses to growth factors known to be involved in epithelial and endothelial development. (PMID:12691260)
- Data suggest that laminin-10 (alpha5beta1gamma1) is required for hair follicle development and report the first use of exogenous protein to correct a cutaneous developmental defect. (PMID:12743034)
- Incubation of mouse macrophages with human laminin alpha5 chain peptide results in marked increase in matrix metalloproteinase-9 mRNA and gelatinolytic activity; this peptide is chemotactic for mouse neutrophils and macrophages in vitro and in vivo. (PMID:12817023)
- Autocrine LM-5 mediates anchorage-independent survival in breast tumors through ligation of a wild-type, but not a cytoplasmic tail-truncated alpha6beta4 integrin. (PMID:14691145)
- cAMP-Epac-Rap1 pathway regulates cell spreading and cell adhesion to laminin-5 through the alpha3beta1 integrin but not the alpha6beta4 integrin (PMID:15302884)
- alpha6beta4 can augment cell-cell adhesion and slow down haptotaxis over laminin-5 (PMID:15579904)
- prostate cancer cells expressing high levels of MT1-MMP have increased invasive potential through their ability to degrade and invade Ln-10 barriers (PMID:15967115)
- Protein kinase A-dependent phosphorylation of Lutheran/basal cell adhesion molecule glycoprotein regulates cell adhesion to laminin alpha5 (PMID:15975931)
- An increase was noted in LAMA5 immunostaining in the dilated muscle of the ganglionic bowel upstream the distal aganglionic region in a group of Hirschprung disease patients. (PMID:16226104)
- Data show that alpha6 and alpha3 integrin subunits interact with laminin 5 to increase expression of E-cadherin, and suggest that phosphoinositide 3-kinase (PI 3-kinase) activation plays a key role in this cross-talk. (PMID:16339173)
- Results describe the expression of laminin 5 by parental and c-Ha-ras-transformed HaCaT keratinocytes in organotypic cultures. (PMID:16460839)
- laminin 5 and p16INK4A have roles in wound healing and senescence (PMID:16723698)
- in natural HPV infection, proliferating keratinocytes expressing alpha6 integrin at the site of epithelial wounding might be targeted by virions adsorbed transiently to LN5 secreted by migrating keratinocytes (PMID:16940506)
- The results indicate that glioma cells secrete alpha2-, alpha4- and alpha5-laminins and that alpha3- and alpha5-laminins, selectively promote glioma cell migration and identify alpha3beta1 as the predominant integrin and laminin receptor in glioma cells. (PMID:17888902)
- Concomitant changes take place in laminin- and collagen-binding receptors. Laminin-411 reduces adhesion to laminin-511 and fibronectin, suggesting that tumor cells could utilize laminin-411 in their invasive behavior (PMID:18496706)
- alpha5-laminin was the most adhesion- and migration-promoting isoform for human blood lymphocytes, followed by alpha3- (Lm-332) and alpha4- (Lm-411) laminins. (PMID:18523231)
- These results suggest that laminins containing alpha 5 serve as functional substrates regulating progression of hepatocellular carcinoma. (PMID:18635166)
- results suggest an evolutionarily conserved role of a member of the laminin gene family in contributing to variation in weight and body composition (PMID:18694491)
- Cytoplasmic and basement membrane laminin is important in the pathogenesis and invasion of basal cell carcinoma. (PMID:19615022)
- Alpha3- and alpha5-laminins, but not other laminin isoforms, mediate mast cell adhesion via alpha3beta1 integrin. (PMID:19752234)
- Abnormal distribution of laminin alpha1 and laminin alpha5 in glomerular basement membrane is correlated with GBM thickening and splitting in human Alport’s syndrome. (PMID:20019771)
- Data from experiment with peptide fragments suggest laminin alpha5 (and laminin alpha4) may be part of host defense response and may protect tissues from invading pathogens. (PMID:20433883)
- investigated the relation between epithelial-mesenchymal transition criteria and laminin-332 expression in a cell culture model of transforming growth factor beta-1 (TGFbeta1)/epithelial growth factor (EGF) long time co-stimulation. (PMID:20819124)
- LAMA5 rs659822 regulates anthropometric and metabolic traits in elderly people (PMID:20951195)
- Data provides support for a primary role of laminin-511 and integrin beta-1 promoting hair follicle epithelial downgrowth without affecting dermal primary cilia and Shh target gene induction. (PMID:21067603)
- Data suggest that the alpha5 laminins emerge as putative primary extracellular matrix mediators of melanoma invasion and metastasis via alpha3/alpha6beta1 and other integrin receptors. (PMID:21195710)
- Polymorphisms in LN5 were associated with a reduced level of hemoglobin and neutropenia in non-small cell lung cancer. (PMID:21461966)
- Data indicate that the function-blocking antibody against Lu/B-CAM should be useful for not only investigating cell adhesion to laminin alpha5 but also for developing drugs to inhibit sickle cell vaso-occlusion. (PMID:21858073)
- PDGF-BB is not superior to laminin as a potential marker of advanced CP. (PMID:21921666)
- These results indicate specific laminin isoforms and integrins in maintenance of human embryonic stem cells pluripotency in feeder-dependent cultures. (PMID:22099024)
- mechanistic role of laminin-511 in tissue homeostasis (PMID:22666383)
- The laminin-5 staining pattern was significantly more often continuous in severe dysplasia/carcinoma-in-situ (PMID:23715200)
- Lutheran (Lu), also known as basal cell adhesion molecule (B-CAM), competes with integrins for binding to laminin alpha5, a subunit of LM-511, a major component of basement membranes. (PMID:24036115)
- Gal-1 decreased the expression of collagen genes COL3A1 and COL5A1 but increased the expression of fibronectin and laminin 5. (PMID:24503541)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lama5 | ENSDARG00000058543 |
| mus_musculus | Lama5 | ENSMUSG00000015647 |
| rattus_norvegicus | Lama5 | ENSRNOG00000053691 |
Paralogs (27): USH2A (ENSG00000042781), LAMC3 (ENSG00000050555), LAMA3 (ENSG00000053747), LAMC2 (ENSG00000058085), NTN1 (ENSG00000065320), NTN4 (ENSG00000074527), ATRN (ENSG00000088812), LAMB4 (ENSG00000091128), LAMB1 (ENSG00000091136), LAMA1 (ENSG00000101680), MEGF8 (ENSG00000105429), MEGF9 (ENSG00000106780), ATRNL1 (ENSG00000107518), LAMA4 (ENSG00000112769), LAMC1 (ENSG00000135862), NTN5 (ENSG00000142233), HSPG2 (ENSG00000142798), TMEFF2 (ENSG00000144339), NTN3 (ENSG00000162068), NTNG1 (ENSG00000162631), EGFLAM (ENSG00000164318), LAMB2 (ENSG00000172037), AGRN (ENSG00000188157), NTNG2 (ENSG00000196358), LAMA2 (ENSG00000196569), LAMB3 (ENSG00000196878), TMEFF1 (ENSG00000241697)
Protein
Protein identifiers
Laminin subunit alpha-5 — O15230 (reviewed: O15230)
Alternative names: Laminin-10 subunit alpha, Laminin-11 subunit alpha, Laminin-15 subunit alpha
All UniProt accessions (3): O15230, A0A087WYH7, H7C5J6
UniProt curated annotations — full annotation on UniProt →
Function. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. Plays a role in the regulation of skeletogenesis, through a mechanism that involves integrin-mediated signaling and PTK2B/PYK2.
Subunit / interactions. Laminin is a complex glycoprotein, consisting of three different polypeptide chains (alpha, beta, gamma), which are bound to each other by disulfide bonds into a cross-shaped molecule comprising one long and three short arms with globules at each end. Alpha-5 is a subunit of laminin-10 (laminin-511), laminin-11 (laminin-521) and laminin-15 (laminin-523).
Subcellular location. Secreted. Extracellular space. Extracellular matrix. Basement membrane.
Tissue specificity. Expressed in heart, lung, kidney, skeletal muscle, pancreas, retina and placenta. Little or no expression in brain and liver. Expressed in muscle, ligaments, periosteum, trabecular bone and throughout the cartilage, particularly in the growth plate and in articular chondrocytes.
Disease relevance. Nephrotic syndrome 26 (NPHS26) [MIM:620049] A form of nephrotic syndrome, a renal disease clinically characterized by severe proteinuria, resulting in complications such as hypoalbuminemia, hyperlipidemia and edema. Kidney biopsies show non-specific histologic changes such as focal segmental glomerulosclerosis and diffuse mesangial proliferation. Some affected individuals have an inherited steroid-resistant form that progresses to end-stage renal failure. NPHS26 is an autosomal recessive form characterized by onset of proteinuria in the first months or years of life. Some patients respond to steroids, whereas others show steroid resistance and progression to end-stage renal disease. The disease is caused by variants affecting the gene represented in this entry. Bent bone dysplasia syndrome 2 (BBDS2) [MIM:620076] An autosomal recessive bone dysplasia characterized by defects in both the axial and appendicular skeleton, with radiographic findings showing undermineralized bone and a distinct angulation of the mid femoral shaft. Extraskeletal features include facial dysmorphisms, abnormally formed ears with tags, wide spaced nipples, and atrial septal defects. Elbow fusions, ulnar flexion contractions at the wrist, bilateral talipes equinovarus, and failure to mount a respiratory effort at birth suggest abnormalities in muscle function. The disease may be caused by variants affecting the gene represented in this entry.
Domain organisation. Domain G is globular and is part of the major cell-binding site located in the long arm of the laminin heterotrimer.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O15230-1 | 1 | yes |
| O15230-2 | 2 |
RefSeq proteins (1): NP_005551* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000034 | Laminin_IV | Domain |
| IPR000742 | EGF | Domain |
| IPR001368 | TNFR/NGFR_Cys_rich_reg | Domain |
| IPR001791 | Laminin_G | Domain |
| IPR002049 | LE_dom | Domain |
| IPR008211 | Laminin_N | Domain |
| IPR009254 | Laminin_aI | Domain |
| IPR010307 | Laminin_dom_II | Domain |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR050440 | Laminin/Netrin_ECM | Family |
| IPR056863 | LMN_ATRN_NET-like_EGF | Domain |
Pfam: PF00052, PF00053, PF00054, PF00055, PF02210, PF06008, PF06009, PF24973
UniProt features (234 total): disulfide bond 88, strand 41, domain 30, sequence variant 26, glycosylation site 23, helix 10, region of interest 4, coiled-coil region 3, splice variant 2, short sequence motif 2, signal peptide 1, chain 1, sequence conflict 1, turn 1, compositionally biased region 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5XAU | X-RAY DIFFRACTION | 1.8 |
| 7CEC | ELECTRON MICROSCOPY | 3.9 |
Predicted structure (AlphaFold)
No AlphaFold model available for O15230 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Antibody-complex structures (SAbDab): 1 — 7CEC
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (88): 778–797, 799–808, 811–826, 829–841, 831–848, 850–859, 1438–1450, 1440–1457, 1459–1468, 1471–1481, 1484–1491, 1486–1498, 1500–1509, 1512–1525, 1528–1543, 1530–1550, 1552–1561, 1564–1574, 1577–1589, 1579–1596 …
Glycosylation sites (23): 95, 143, 243, 452, 479, 900, 921, 959, 1330, 1529, 1555, 2196, 2209, 2303, 2423, 2501, 2568, 2707, 3107, 3209 …
Function
Pathways and Gene Ontology
Reactome pathways
17 pathways
| ID | Pathway |
|---|---|
| R-HSA-1474228 | Degradation of the extracellular matrix |
| R-HSA-3000157 | Laminin interactions |
| R-HSA-3000171 | Non-integrin membrane-ECM interactions |
| R-HSA-3000178 | ECM proteoglycans |
| R-HSA-6785807 | Interleukin-4 and Interleukin-13 signaling |
| R-HSA-8874081 | MET activates PTK2 signaling |
| R-HSA-9638630 | Attachment of bacteria to epithelial cells |
| R-HSA-9913351 | Formation of the dystrophin-glycoprotein complex (DGC) |
| R-HSA-9925563 | Developmental Lineage of Pancreatic Ductal Cells |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-1474244 | Extracellular matrix organization |
| R-HSA-162582 | Signal Transduction |
| R-HSA-168256 | Immune System |
| R-HSA-449147 | Signaling by Interleukins |
| R-HSA-6806834 | Signaling by MET |
| R-HSA-8875878 | MET promotes cell motility |
| R-HSA-9006934 | Signaling by Receptor Tyrosine Kinases |
MSigDB gene sets: 457 (showing top):
GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_UP, GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_GLAND_MORPHOGENESIS, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_SALIVARY_GLAND_DEVELOPMENT, GCANCTGNY_MYOD_Q6, DITTMER_PTHLH_TARGETS_UP, GAUSSMANN_MLL_AF4_FUSION_TARGETS_A_DN, RIZKI_TUMOR_INVASIVENESS_3D_DN, GOBP_KIDNEY_EPITHELIUM_DEVELOPMENT, GOBP_MORPHOGENESIS_OF_EMBRYONIC_EPITHELIUM, CAGCTG_AP4_Q5, GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY
GO Biological Process (26): branching involved in ureteric bud morphogenesis (GO:0001658), morphogenesis of a polarized epithelium (GO:0001738), hair follicle development (GO:0001942), cell adhesion (GO:0007155), integrin-mediated signaling pathway (GO:0007229), muscle organ development (GO:0007517), morphogenesis of embryonic epithelium (GO:0016331), cell migration (GO:0016477), regulation of cell adhesion (GO:0030155), lung development (GO:0030324), regulation of cell migration (GO:0030334), substrate adhesion-dependent cell spreading (GO:0034446), trunk neural crest cell migration (GO:0036484), odontogenesis of dentin-containing tooth (GO:0042475), regulation of embryonic development (GO:0045995), skeletal system morphogenesis (GO:0048705), regulation of epithelial cell proliferation (GO:0050678), cilium assembly (GO:0060271), branching involved in salivary gland morphogenesis (GO:0060445), protein localization to plasma membrane (GO:0072659), postsynapse organization (GO:0099173), neural crest cell migration (GO:0001755), kidney development (GO:0001822), animal organ morphogenesis (GO:0009887), system development (GO:0048731), branching morphogenesis of an epithelial tube (GO:0048754)
GO Molecular Function (6): integrin binding (GO:0005178), receptor ligand activity (GO:0048018), signaling receptor binding (GO:0005102), extracellular matrix structural constituent (GO:0005201), protein binding (GO:0005515), cell adhesion mediator activity (GO:0098631)
GO Cellular Component (13): extracellular region (GO:0005576), basement membrane (GO:0005604), laminin-332 trimer (GO:0005610), obsolete extracellular space (GO:0005615), nucleus (GO:0005634), extracellular matrix (GO:0031012), neuromuscular junction (GO:0031594), synaptic cleft (GO:0043083), laminin-511 trimer (GO:0043259), laminin-521 trimer (GO:0043260), extracellular exosome (GO:0070062), extracellular matrix of synaptic cleft (GO:0098965), glutamatergic synapse (GO:0098978)
Reactome top-level categories
Rollup of top-11 pathways:
| Category | Pathways |
|---|---|
| Extracellular matrix organization | 4 |
| Signaling by Interleukins | 1 |
| MET promotes cell motility | 1 |
| Biofilm formation | 1 |
| Non-integrin membrane-ECM interactions | 1 |
| Developmental Cell Lineages of the Exocrine Pancreas | 1 |
| Immune System | 1 |
| Cytokine Signaling in Immune system | 1 |
| Signaling by Receptor Tyrosine Kinases | 1 |
| Signaling by MET | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| laminin trimer | 3 |
| morphogenesis of an epithelium | 2 |
| animal organ development | 2 |
| cell adhesion | 2 |
| signaling receptor binding | 2 |
| cell adhesion molecule binding | 2 |
| extracellular matrix | 2 |
| cellular anatomical structure | 2 |
| synapse | 2 |
| branching morphogenesis of an epithelial tube | 1 |
| ureteric bud morphogenesis | 1 |
| hair cycle process | 1 |
| anatomical structure development | 1 |
| skin epidermis development | 1 |
| cellular process | 1 |
| cell surface receptor signaling pathway | 1 |
| muscle structure development | 1 |
| embryonic morphogenesis | 1 |
| cell motility | 1 |
| regulation of cellular process | 1 |
| respiratory tube development | 1 |
| respiratory system development | 1 |
| cell migration | 1 |
| regulation of cell motility | 1 |
| cell-substrate adhesion | 1 |
| neural crest cell migration | 1 |
| trunk segmentation | 1 |
| odontogenesis | 1 |
| embryo development | 1 |
| regulation of multicellular organismal development | 1 |
| skeletal system development | 1 |
| animal organ morphogenesis | 1 |
| regulation of cell population proliferation | 1 |
| epithelial cell proliferation | 1 |
| axoneme assembly | 1 |
| intraciliary transport involved in cilium assembly | 1 |
| cilium organization | 1 |
| protein localization to cilium | 1 |
| organelle assembly | 1 |
| trans-Golgi to periciliary membrane compartment transport | 1 |
Protein interactions and networks
STRING
2237 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LAMA5 | ITGA6 | P23229 | 868 |
| LAMA5 | BCAM | P50895 | 846 |
| LAMA5 | LAMC1 | P11047 | 822 |
| LAMA5 | LAMB1 | P07942 | 781 |
| LAMA5 | ITGB1 | P05556 | 774 |
| LAMA5 | COL4A1 | P02462 | 710 |
| LAMA5 | COL4A2 | P08572 | 691 |
| LAMA5 | NID1 | P14543 | 687 |
| LAMA5 | FN1 | P02751 | 652 |
| LAMA5 | COL6A1 | P12109 | 652 |
| LAMA5 | LAMA4 | Q16363 | 648 |
| LAMA5 | COL4A5 | P29400 | 646 |
| LAMA5 | COL12A1 | Q99715 | 624 |
| LAMA5 | COL6A2 | P12110 | 619 |
| LAMA5 | DAG1 | Q14118 | 617 |
IntAct
136 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ARRDC1 | WWP2 | psi-mi:“MI:0914”(association) | 0.850 |
| C1QTNF9 | C1QTNF9B | psi-mi:“MI:0914”(association) | 0.780 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| BCAM | LAMA5 | psi-mi:“MI:0914”(association) | 0.640 |
| KLHL22 | TMEM223 | psi-mi:“MI:0914”(association) | 0.640 |
| ODAPH | TCAF2 | psi-mi:“MI:0914”(association) | 0.530 |
| DEFA1 | MANBA | psi-mi:“MI:0914”(association) | 0.530 |
| OS9 | AGRN | psi-mi:“MI:0914”(association) | 0.530 |
| DKK3 | NME4 | psi-mi:“MI:0914”(association) | 0.530 |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| LRRTM4 | AP3B1 | psi-mi:“MI:0914”(association) | 0.530 |
| CRP | QSOX1 | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS1 | LAMA5 | psi-mi:“MI:0914”(association) | 0.530 |
| LAIR2 | LAMA5 | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS1 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| NOTCH2 | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| DAG1 | LAMA5 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| LAMA5 | PLEC | psi-mi:“MI:0915”(physical association) | 0.400 |
| LAMA5 | HOXA1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SMAD2 | LAMA5 | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (146): LAMA5 (Affinity Capture-MS), LAMA5 (Affinity Capture-MS), LAMA5 (Affinity Capture-MS), LAMA5 (Co-fractionation), LAMA5 (Affinity Capture-MS), LAMA5 (Affinity Capture-MS), LAMA5 (Affinity Capture-MS), LAMA5 (Affinity Capture-MS), LAMC1 (Co-localization), LAMA5 (Affinity Capture-MS), LAMA5 (Affinity Capture-MS), LAMA5 (Affinity Capture-MS), LAMA5 (Affinity Capture-MS), LAMA5 (Affinity Capture-MS), LAMA5 (Affinity Capture-MS)
ESM2 similar proteins: A0JP86, A1A5Y0, A4D0S4, G5ECE3, O15230, P11046, P15215, P15800, P16144, P18563, P18564, P19137, P24043, P25391, P26010, P26011, P55268, P58459, P97607, Q13751, Q13753, Q16787, Q1EHB3, Q1RPR6, Q2KIT5, Q2QI47, Q5RB89, Q60438, Q60675, Q61001, Q61087, Q61092, Q61292, Q61789, Q68SA9, Q6AYF4, Q75N90, Q863C4, Q8BG22, Q8HZI9
Diamond homologs: A0JP86, A2ASQ1, G5ECE3, O00468, O00634, O09118, O15230, O75445, O75882, O95631, P02468, P11047, P15215, P19137, P24043, P25304, P25391, P31696, P34710, P97927, Q00174, Q01635, Q13751, Q13753, Q16363, Q16787, Q18823, Q19981, Q1LVF0, Q24567, Q24568, Q27262, Q2HXW4, Q2QI47, Q5RB89, Q5VV63, Q60675, Q61001, Q61087, Q61092
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| LAMA5 | “form complex” | Laminin-10 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 140 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| ERAD pathway | 7 | 10.8× | 4e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
2360 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 8 |
| Likely pathogenic | 16 |
| Uncertain significance | 1043 |
| Likely benign | 802 |
| Benign | 288 |
Top pathogenic / likely-pathogenic (24)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1180535 | GRCh37/hg19 20q13.2-13.33(chr20:51799648-62916626)x3 | Pathogenic |
| 1707488 | NM_005560.6(LAMA5):c.1282+1G>A | Pathogenic |
| 1707489 | NM_005560.6(LAMA5):c.9232C>T (p.Arg3078Ter) | Pathogenic |
| 1707490 | NM_005560.6(LAMA5):c.8158C>T (p.Arg2720Ter) | Pathogenic |
| 2444312 | NM_005560.6(LAMA5):c.6883C>T (p.Gln2295Ter) | Pathogenic |
| 3117515 | NM_005560.6(LAMA5):c.3364C>T (p.Gln1122Ter) | Pathogenic |
| 4531761 | NM_005560.6(LAMA5):c.3012_3013dup (p.Val1005fs) | Pathogenic |
| 4537018 | NM_005560.6(LAMA5):c.2341_2342del (p.Arg781fs) | Pathogenic |
| 1077028 | NM_005560.6(LAMA5):c.9700_9728del (p.Leu3234fs) | Likely pathogenic |
| 1077029 | NM_005560.6(LAMA5):c.8488G>A (p.Ala2830Thr) | Likely pathogenic |
| 1077030 | NM_005560.6(LAMA5):c.5315C>T (p.Thr1772Met) | Likely pathogenic |
| 1077032 | NM_005560.6(LAMA5):c.1538G>A (p.Gly513Glu) | Likely pathogenic |
| 1077035 | NM_005560.6(LAMA5):c.4315G>A (p.Gly1439Ser) | Likely pathogenic |
| 2429886 | NM_005560.6(LAMA5):c.5071G>T (p.Glu1691Ter) | Likely pathogenic |
| 2446390 | NM_005560.6(LAMA5):c.7036_7037del (p.Gln2346fs) | Likely pathogenic |
| 2446391 | NM_005560.6(LAMA5):c.4300G>A (p.Gly1434Arg) | Likely pathogenic |
| 2498385 | NM_005560.6(LAMA5):c.5071del (p.Glu1691fs) | Likely pathogenic |
| 3256690 | NM_005560.6(LAMA5):c.8477dup (p.Gln2827fs) | Likely pathogenic |
| 3377297 | NM_005560.6(LAMA5):c.10739_10743dup (p.Arg3582fs) | Likely pathogenic |
| 4072274 | NM_005560.6(LAMA5):c.6271C>T (p.Arg2091Ter) | Likely pathogenic |
| 4278109 | NM_005560.6(LAMA5):c.4364G>A (p.Gly1455Asp) | Likely pathogenic |
| 4278218 | NM_005560.6(LAMA5):c.298G>A (p.Gly100Ser) | Likely pathogenic |
| 4292615 | NM_005560.6(LAMA5):c.5791C>T (p.Arg1931Ter) | Likely pathogenic |
| 4849351 | NM_005560.6(LAMA5):c.1336C>T (p.Arg446Ter) | Likely pathogenic |
SpliceAI
12397 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 20:62308013:T:TA | acceptor_gain | 1.0000 |
| 20:62308016:CCCA:C | acceptor_loss | 1.0000 |
| 20:62308018:CA:C | acceptor_loss | 1.0000 |
| 20:62308019:A:AG | acceptor_gain | 1.0000 |
| 20:62308019:AG:A | acceptor_loss | 1.0000 |
| 20:62308019:AGT:A | acceptor_gain | 1.0000 |
| 20:62308019:AGTG:A | acceptor_gain | 1.0000 |
| 20:62308020:G:GT | acceptor_gain | 1.0000 |
| 20:62308020:GT:G | acceptor_gain | 1.0000 |
| 20:62308020:GTG:G | acceptor_gain | 1.0000 |
| 20:62308020:GTGG:G | acceptor_gain | 1.0000 |
| 20:62308020:GTGGA:G | acceptor_gain | 1.0000 |
| 20:62308021:T:TA | acceptor_gain | 1.0000 |
| 20:62308022:G:A | acceptor_gain | 1.0000 |
| 20:62308174:AGCAG:A | donor_loss | 1.0000 |
| 20:62308175:GCAG:G | donor_gain | 1.0000 |
| 20:62308178:GGTA:G | donor_loss | 1.0000 |
| 20:62308179:G:GG | donor_gain | 1.0000 |
| 20:62308363:TGCAG:T | acceptor_loss | 1.0000 |
| 20:62308364:GCAG:G | acceptor_loss | 1.0000 |
| 20:62308466:GGGCG:G | donor_gain | 1.0000 |
| 20:62308467:GGCG:G | donor_gain | 1.0000 |
| 20:62308467:GGCGG:G | donor_gain | 1.0000 |
| 20:62308468:GCG:G | donor_gain | 1.0000 |
| 20:62308468:GCGG:G | donor_gain | 1.0000 |
| 20:62308471:G:GG | donor_gain | 1.0000 |
| 20:62308471:GT:G | donor_loss | 1.0000 |
| 20:62308472:TAAGT:T | donor_loss | 1.0000 |
| 20:62308643:A:AG | acceptor_gain | 1.0000 |
| 20:62308643:AAC:A | acceptor_gain | 1.0000 |
AlphaMissense
23908 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 20:62346950:C:A | W345C | 0.999 |
| 20:62346950:C:G | W345C | 0.999 |
| 20:62351755:C:G | C302S | 0.999 |
| 20:62351756:A:T | C302S | 0.999 |
| 20:62351790:G:C | S290R | 0.999 |
| 20:62351790:G:T | S290R | 0.999 |
| 20:62351792:T:G | S290R | 0.999 |
| 20:62351988:C:G | R260P | 0.999 |
| 20:62352284:G:C | C215W | 0.999 |
| 20:62352285:C:G | C215S | 0.999 |
| 20:62352286:A:G | C215R | 0.999 |
| 20:62352286:A:T | C215S | 0.999 |
| 20:62353147:C:A | W185C | 0.999 |
| 20:62353147:C:G | W185C | 0.999 |
| 20:62353149:A:G | W185R | 0.999 |
| 20:62353149:A:T | W185R | 0.999 |
| 20:62353194:A:G | W170R | 0.999 |
| 20:62353194:A:T | W170R | 0.999 |
| 20:62362466:C:A | W128C | 0.999 |
| 20:62362466:C:G | W128C | 0.999 |
| 20:62346918:C:G | C356S | 0.998 |
| 20:62346919:A:T | C356S | 0.998 |
| 20:62351754:G:C | C302W | 0.998 |
| 20:62351756:A:G | C302R | 0.998 |
| 20:62351784:C:A | K292N | 0.998 |
| 20:62351784:C:G | K292N | 0.998 |
| 20:62351788:A:T | I291N | 0.998 |
| 20:62351979:A:G | F263S | 0.998 |
| 20:62351985:A:G | L261P | 0.998 |
| 20:62352285:C:T | C215Y | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000040444 (20:62340358 C>A), RS1000130114 (20:62364548 C>T), RS1000137079 (20:62331530 C>T), RS1000168325 (20:62353259 C>A,T), RS1000174947 (20:62366277 G>A), RS1000230996 (20:62363965 C>T), RS1000286076 (20:62323982 G>A,T), RS1000288179 (20:62317363 AGCTGGCCCAGCT>A), RS1000393299 (20:62329767 T>C), RS1000432278 (20:62364117 G>A), RS1000470314 (20:62359059 T>C), RS1000529654 (20:62333216 C>G,T), RS1000561190 (20:62308847 T>C,G), RS1000622498 (20:62360220 G>T), RS1000639663 (20:62339488 G>A,C,T)
Disease associations
OMIM: gene MIM:601033 | disease phenotypes: MIM:620076, MIM:620049, MIM:236100
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| LAMA5-related multisystemic syndrome | Definitive | Autosomal recessive |
| nephrotic syndrome, IIa 26 | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| LAMA5-related multisystemic syndrome | Definitive | AR |
Mondo (11): nephrotic syndrome (MONDO:0005377), bent bone dysplasia syndrome 2 (MONDO:0859573), presynaptic congenital myasthenic syndrome (MONDO:0700466), multiple sclerosis (MONDO:0005301), prostate cancer (MONDO:0008315), nephrotic syndrome, IIa 26 (MONDO:0031061), LAMA5-related multisystemic syndrome (MONDO:0033856), focal segmental glomerulosclerosis (MONDO:0100313), polymicrogyria (MONDO:0000087), holoprosencephaly (MONDO:0016296), omphalocele (MONDO:0019015)
Orphanet (7): Presynaptic congenital myasthenic syndromes (Orphanet:98914), Familial prostate cancer (Orphanet:1331), LAMA5-related multisystemic syndrome (Orphanet:521450), Polymicrogyria (Orphanet:35981), Holoprosencephaly (Orphanet:2162), Omphalocele (Orphanet:660), NON RARE IN EUROPE: Multiple sclerosis (Orphanet:802)
HPO phenotypes
53 total (30 of 53 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000049 | Shawl scrotum |
| HP:0000054 | Micropenis |
| HP:0000093 | Proteinuria |
| HP:0000097 | Focal segmental glomerulosclerosis |
| HP:0000100 | Nephrotic syndrome |
| HP:0000465 | Webbed neck |
| HP:0000470 | Short neck |
| HP:0000474 | Thickened nuchal skin fold |
| HP:0000476 | Cystic hygroma |
| HP:0000707 | Abnormality of the nervous system |
| HP:0000737 | Irritability |
| HP:0000773 | Short ribs |
| HP:0000879 | Short sternum |
| HP:0000883 | Thin ribs |
| HP:0000926 | Platyspondyly |
| HP:0000938 | Osteopenia |
| HP:0000969 | Edema |
| HP:0001511 | Intrauterine growth retardation |
| HP:0001631 | Atrial septal defect |
| HP:0001762 | Talipes equinovarus |
| HP:0001945 | Fever |
| HP:0001967 | Diffuse mesangial sclerosis |
| HP:0002027 | Abdominal pain |
| HP:0002240 | Hepatomegaly |
| HP:0002315 | Headache |
| HP:0002586 | Peritonitis |
| HP:0002804 | Arthrogryposis multiplex congenita |
| HP:0002866 | Hypoplastic iliac wing |
| HP:0002980 | Femoral bowing |
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000843_2 | Colorectal cancer | 2.000000e-10 |
| GCST001942_4 | Prostate cancer | 4.000000e-08 |
| GCST002411_6 | Colorectal cancer | 3.000000e-11 |
| GCST002919_19 | Colorectal cancer | 3.000000e-11 |
| GCST003226_19 | Pelvic organ prolapse | 6.000000e-06 |
| GCST007856_47 | Colorectal cancer or advanced adenoma | 1.000000e-26 |
| GCST008059_188 | Estimated glomerular filtration rate | 3.000000e-12 |
| GCST011053_14 | Neuroblastoma (pediatric) | 8.000000e-14 |
| GCST012490_375 | Femur bone mineral density x serum urate levels interaction | 3.000000e-08 |
| GCST90002400_307 | Plateletcrit | 3.000000e-12 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004531 | urate measurement |
| EFO:0007985 | platelet crit |
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D005923 | Glomerulosclerosis, Focal Segmental | C12.050.351.968.419.570.363.640; C12.200.777.419.570.363.660; C12.950.419.570.363.640 |
| D016142 | Holoprosencephaly | C05.660.207.410; C10.500.034.875; C16.131.077.410; C16.131.260.380; C16.131.621.207.410; C16.131.666.034.875; C16.320.180.380 |
| D009103 | Multiple Sclerosis | C10.114.375.500; C10.314.350.500; C20.111.258.250.500 |
| D009404 | Nephrotic Syndrome | C12.050.351.968.419.630.643; C12.200.777.419.630.643; C12.950.419.630.643 |
| D065706 | Polymicrogyria | C10.500.507.500.500; C16.131.666.507.500.500 |
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2364187 (PROTEIN COMPLEX GROUP)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
79 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 4 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 4 |
| bisphenol A | decreases expression, affects expression, affects cotreatment, increases methylation | 3 |
| sodium arsenite | decreases expression, increases expression | 3 |
| Particulate Matter | increases abundance, affects expression, increases reaction, decreases expression | 3 |
| bisphenol F | affects cotreatment, increases methylation, decreases expression | 2 |
| Cisplatin | affects expression, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Smoke | decreases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| dicrotophos | increases expression | 1 |
| tremortin | decreases expression | 1 |
| 2,4,6-tribromophenol | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pirinixic acid | increases activity, affects binding, decreases expression | 1 |
| deoxynivalenol | decreases expression | 1 |
| lead acetate | decreases expression | 1 |
| titanium dioxide | affects binding, increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| cobaltous chloride | decreases secretion | 1 |
| butyraldehyde | decreases expression | 1 |
| tetrabromobisphenol A | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| cupric chloride | decreases expression | 1 |
| phenanthrene | decreases expression | 1 |
| boric acid | increases expression | 1 |
| perfluorodecanoic acid | decreases expression | 1 |
| nivalenol | decreases expression | 1 |
| beta-methylcholine | affects expression | 1 |
Cellosaurus cell lines
4 cell lines: 4 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D9I9 | Ubigene HEK293 LAMA5 KO | Transformed cell line | Female |
| CVCL_RY69 | HEK293 rLN10 | Transformed cell line | Female |
| CVCL_RY70 | HEK293 rLN10_hNid1 | Transformed cell line | Female |
| CVCL_VN83 | HEK293 rLN10_hEcad | Transformed cell line | Female |
Clinical trials (associated diseases)
104 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00308321 | PHASE4 | UNKNOWN | Long Term Tapering or Standard Steroids for Nephrotic Syndrome |
| NCT01021540 | PHASE4 | COMPLETED | Prospective Study Evaluating the Effect of Repository Corticotropin in the Treatment of Various Nephrotic Syndromes |
| NCT01028287 | PHASE4 | COMPLETED | Adrenocorticotropic Hormone (ACTH) Treatment of Nephrotic Range Proteinuria in Diabetic Nephropathy (NRDN) |
| NCT01162005 | PHASE4 | COMPLETED | Therapeutic Effect of Tacrolimus on Primary Nephrotic Syndrome in Children |
| NCT01895894 | PHASE4 | COMPLETED | Mycophenolate Mofetil in Pediatric Steroid Dependent Nephrotic Syndrome |
| NCT02238418 | PHASE4 | COMPLETED | Efficacy of Usual Vitamin D Supplementation and Its Impact on Children and Adolescents Calciuria. |
| NCT02382575 | PHASE4 | UNKNOWN | Efficacy and Safety of Rituximab to That of Calcineurin Inhibitors in Children With Steroid Resistant Nephrotic Syndrome |
| NCT02427880 | PHASE4 | COMPLETED | Role of Acetazolamide and Hydrochlorothiazide Followed by Furosemide in Treating Nephrotic Edema |
| NCT03210688 | PHASE4 | COMPLETED | Active Vitamin D And Reduced Dose Prednisolone for Treatment in Minimal Change Nephropathy |
| NCT03347357 | PHASE4 | COMPLETED | Pharmacokinetics of Tacrolimus in Children |
| NCT05696977 | PHASE4 | UNKNOWN | Effect of Obesity on Cyclosporine Blood Trough Level in Nephrotic Syndrome Patients |
| NCT05966818 | PHASE4 | UNKNOWN | Effect of Dapagliflozin in Non-Diabetic Patients With Nephrotic Syndrome. |
| NCT06026787 | PHASE4 | COMPLETED | Clinical Value of Adding Dapagliflozin in Patients With Nephrotic Syndrome |
| NCT00354731 | PHASE3 | COMPLETED | Efficacy of Pentoxifylline on Primary Nephrotic Syndrome |
| NCT00615667 | PHASE3 | COMPLETED | Prospective, Multicenter Study of the Efficacy and Tolerance of Tacrolimus on Refractory Nephrotic Syndrome (RNS) |
| NCT00981838 | PHASE3 | COMPLETED | Rituximab in Multirelapsing Minimal Change Disease (MCD) or Focal Segmental Glomerulosclerosis (FSGS) |
| NCT01197040 | PHASE3 | COMPLETED | Evaluation of Low Dose Corticosteroids Efficiency, Associated With Myfortic ® in the Treatment of Nephrotic Syndrome |
| NCT01309477 | PHASE3 | COMPLETED | The Efficacy and Tolerance of Tacrolimus Sustained-release Capsules on Refractory Nephrotic Syndrome (RNS) |
| NCT02132195 | PHASE3 | COMPLETED | Adrenocorticotropic Hormone (ACTH) for Frequently Relapsing and Steroid Dependent Nephrotic Syndrome |
| NCT02257697 | PHASE3 | COMPLETED | A Study to Evaluate the Efficacy and Safety of Mizoribine in the Treatment of Refractory Nephrotic Syndrome |
| NCT02438982 | PHASE3 | COMPLETED | Efficacy and Safety of Rituximab to That of Calcineurin Inhibitors in Children With Steroid Dependent Nephrotic Syndrome |
| NCT03141970 | PHASE3 | COMPLETED | Prednisolone Trial in Children Younger Than 4 Years |
| NCT03501459 | PHASE3 | UNKNOWN | Lymphocyte Markers As Predictors Of Responsiveness To Rituximab Among Patients With Idiopathic Nephrotic Syndrome |
| NCT05079789 | PHASE3 | TERMINATED | Amiloride in Nephrotic Syndrome |
| NCT05716880 | PHASE3 | RECRUITING | Ketoanalogues for Muscle Mass Loss in Nephrotic Syndrome |
| NCT06635720 | PHASE3 | ACTIVE_NOT_RECRUITING | REduced-dose Steroid PrOtocol for Childhood Nephrotic SyndromE (RESPONSE) |
| NCT00001212 | PHASE2 | COMPLETED | Drug Therapy in Lupus Nephropathy |
| NCT00001959 | PHASE2 | COMPLETED | Pirfenidone to Treat Kidney Disease (Focal Segmental Glomerulosclerosis) |
| NCT00004466 | PHASE2 | TERMINATED | Pilot Study of Atorvastatin in Children With Chronic Hyperlipidemia Secondary to Nephrotic Syndrome |
| NCT00004990 | PHASE2 | COMPLETED | Once-A-Month Steroid Treatment for Patients With Focal Segmental Glomerulosclerosis |
| NCT00977977 | PHASE2 | RECRUITING | Rituximab Plus Cyclosporine in Idiopathic Membranous Nephropathy |
| NCT02394106 | PHASE2 | TERMINATED | Ofatumumab in Children With Drug Resistant Idiopathic Nephrotic Syndrome |
| NCT02394119 | PHASE2 | COMPLETED | Ofatumumab Versus Rituximab in Children With Steroid and Calcineurin Inhibitor Dependent Idiopathic Nephrotic Syndrome |
| NCT02592798 | PHASE2 | COMPLETED | Pilot Study to Evaluate the Safety and Efficacy of Abatacept in Adults and Children 6 Years and Older With Excessive Loss of Protein in the Urine Due to Either Focal Segmental Glomerulosclerosis (FSGS) or Minimal Change Disease (MCD) |
| NCT02966717 | PHASE2 | UNKNOWN | Rituximab Combined With MSCs in the Treatment of PNS (3-4 Stage of CKD) |
| NCT03004001 | PHASE2 | TERMINATED | Effect of PCSK9-Antibody (Alirocumab) on Dyslipidemia Secondary to Nephrotic Syndrome |
| NCT03949855 | PHASE2 | RECRUITING | Belimumab With Rituximab for Primary Membranous Nephropathy |
| NCT05599815 | PHASE2 | WITHDRAWN | Part 1 - A Clinical Trial in Patients With Frequently Relapsing and Steroid-Dependent Nephrotic Syndrome |
| NCT05704400 | PHASE2 | UNKNOWN | Efficacy of Anti-CD20 Ab Associated With Anti-CD38 in the Childhood Multidrug Dependent and Resistant Nephrotic Syndrome |
| NCT06983028 | PHASE2 | RECRUITING | Atacicept in Multiple Glomerular Diseases |
Related Atlas pages
- Associated diseases: nephrotic syndrome, IIa 26, LAMA5-related multisystemic syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): bent bone dysplasia syndrome 2, focal segmental glomerulosclerosis, holoprosencephaly, LAMA5-related multisystemic syndrome, nephrotic syndrome, nephrotic syndrome, IIa 26, neuroblastoma, omphalocele, pelvic organ prolapse, polymicrogyria, presynaptic congenital myasthenic syndrome