LAMP2
gene geneOn this page
Also known as CD107b
Summary
LAMP2 (lysosome associated membrane protein 2, HGNC:6501) is a protein-coding gene on chromosome Xq24, encoding Lysosome-associated membrane glycoprotein 2 (P13473). Lysosomal membrane glycoprotein which plays an important role in lysosome biogenesis, lysosomal pH regulation and autophagy. It is haploinsufficient (ClinGen: sufficient evidence).
The protein encoded by this gene is a member of a family of membrane glycoproteins. This glycoprotein provides selectins with carbohydrate ligands. It may play a role in tumor cell metastasis. It may also function in the protection, maintenance, and adhesion of the lysosome. Alternative splicing of this gene results in multiple transcript variants encoding distinct proteins.
Source: NCBI Gene 3920 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Danon disease (Definitive, ClinGen)
- Clinical variants (ClinVar): 950 total — 117 pathogenic, 29 likely-pathogenic
- Phenotypes (HPO): 37
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_002294
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6501 |
| Approved symbol | LAMP2 |
| Name | lysosome associated membrane protein 2 |
| Location | Xq24 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CD107b |
| Ensembl gene | ENSG00000005893 |
| Ensembl biotype | protein_coding |
| OMIM | 309060 |
| Entrez | 3920 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 18 protein_coding, 1 nonsense_mediated_decay
ENST00000200639, ENST00000371335, ENST00000434600, ENST00000486593, ENST00000706600, ENST00000866853, ENST00000866854, ENST00000866855, ENST00000866856, ENST00000866857, ENST00000866858, ENST00000936274, ENST00000952162, ENST00000952163, ENST00000952164, ENST00000952165, ENST00000952166, ENST00000952167, ENST00000952168
RefSeq mRNA: 3 — MANE Select: NM_002294
NM_001122606, NM_002294, NM_013995
CCDS: CCDS14599, CCDS14600, CCDS48159
Canonical transcript exons
ENST00000200639 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000374515 | 120442599 | 120442662 |
| ENSE00000675764 | 120455357 | 120455570 |
| ENSE00000854520 | 120441730 | 120441894 |
| ENSE00000854522 | 120446305 | 120446427 |
| ENSE00000854523 | 120447841 | 120448025 |
| ENSE00000854524 | 120448970 | 120449128 |
| ENSE00001187748 | 120426148 | 120431462 |
| ENSE00003615412 | 120456651 | 120456769 |
| ENSE00003896841 | 120469106 | 120469296 |
Expression profiles
Bgee: expression breadth ubiquitous, 301 present calls, max score 99.23.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 122.7441 / max 3093.6267, expressed in 1825 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 200349 | 122.7441 | 1825 |
Top tissues by expression
301 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| corpus callosum | UBERON:0002336 | 99.23 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 98.82 | gold quality |
| nephron tubule | UBERON:0001231 | 98.81 | gold quality |
| parotid gland | UBERON:0001831 | 98.73 | gold quality |
| gall bladder | UBERON:0002110 | 98.56 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 98.53 | gold quality |
| stromal cell of endometrium | CL:0002255 | 98.40 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 98.39 | gold quality |
| gingival epithelium | UBERON:0001949 | 98.34 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 98.25 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 98.23 | gold quality |
| spinal cord | UBERON:0002240 | 98.22 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 98.14 | gold quality |
| gingiva | UBERON:0001828 | 98.03 | gold quality |
| cranial nerve II | UBERON:0000941 | 97.85 | gold quality |
| islet of Langerhans | UBERON:0000006 | 97.83 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 97.65 | gold quality |
| upper leg skin | UBERON:0004262 | 97.65 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 97.62 | gold quality |
| retina | UBERON:0000966 | 97.59 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 97.52 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 97.46 | gold quality |
| squamous epithelium | UBERON:0006914 | 97.35 | gold quality |
| monocyte | CL:0000576 | 97.29 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 97.26 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 97.25 | gold quality |
| minor salivary gland | UBERON:0001830 | 97.19 | gold quality |
| substantia nigra | UBERON:0002038 | 97.19 | gold quality |
| endothelial cell | CL:0000115 | 97.14 | gold quality |
| midbrain | UBERON:0001891 | 97.14 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-35 | yes | 82.13 |
| E-MTAB-6701 | yes | 39.35 |
| E-GEOD-84465 | yes | 13.10 |
| E-CURD-46 | yes | 9.77 |
| E-ENAD-17 | no | 1241.62 |
| E-MTAB-3929 | no | 690.66 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): VPS35
miRNA regulators (miRDB)
101 targeting LAMP2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-518D-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-518F-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-520C-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-526A-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-518E-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519A-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519B-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519C-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-522-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-523-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-574-5P | 100.00 | 66.01 | 989 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-520G-5P | 99.99 | 66.76 | 658 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-1-3P | 99.93 | 72.35 | 1914 |
| HSA-MIR-206 | 99.93 | 72.50 | 1893 |
| HSA-MIR-552-5P | 99.93 | 68.56 | 1583 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- review of structure, function, cell and tissue distribution, intracellular trafficking (PMID:12144129)
- This studu showed decreased LAMP2 expression in the sketal muscle in female patient with Danon disease. (PMID:14561493)
- The glycogen-storage cardiomyopathy produced by LAMP2 or PRKAG2 mutations resembles hypertrophic cardiomyopathy but is distinguished by electrophysiological abnormalities (PMID:15673802)
- role for the lysosomal Lamp-2a-hsc70 complex in promoting immunological recognition and antigen presentation (PMID:15894275)
- LAMP2 mutations may account for significant proportion of cases of hypertrophic cardiomyopathy children, especially when skeletal myopathy and/or Wolff-Parkinson-White syndrome is present. Danon disease may be underrecognized in pediatric cardiology. (PMID:16144992)
- Novel evidence for differential expression of HBGA and LAMPs in proliferative and involutive phases of immunohistochemistry is presented. (PMID:16570122)
- LAMP-1 and LAMP-2 may have roles in accidental involution of the thymic gland (PMID:17048695)
- Our report further expands the phenotype of Danon disease by describing retinopathy in 3 cases. A thorough clinical examination, including ophthalmic investigation, is needed in all cases of Danon disease. (PMID:17296900)
- Data show that cells lacking either LAMP-1 or LAMP-2 alone formed phagosomes that gradually acquired microbicidal activity and curtailed bacterial growth, but LAMP-1 and LAMP-2 double-deficient cells failed to kill engulfed Neisseria gonorrhoeae. (PMID:17506821)
- The biopsied muscle specimen stained for LAMP2 and confirmed the diagnosis of vacuolar myopathy with dilated cardiomyopathy. (PMID:17873513)
- Analysis of the lysosome-associated membrane protein-2 (LAMP-2) gene detected a novel mutation, confirming a diagnosis of Danon disease. (PMID:17899313)
- A new intronic mutation in the LAMP2 gene in French Candian family leading to out frame skppin of exon 7 in Dannon disease. (PMID:18004770)
- mutation located at the second nucleotide in the intron 8 of the Lamp-2 gene (c.1093+2 T>A) that generated exon 8 skipping confirmed at RNA level in Danon disease (PMID:18061453)
- UCH-L1 directly interacted with the cytosolic region of LAMP-2A. (PMID:18550537)
- Despite its abundance, LAMP-1 is not essential, but LAMP-2 may be partially important for the Salmonella-containing vacuolar membrane. (PMID:18958159)
- Danon disease is an X-linked dominant multisystem disorder that includes hypertrophic cardiomyopathy with skeletal myopathy, and results from mutations in the gene encoding the lysosome-associated membrane protein-2 (LAMP-2). (PMID:19057086)
- Most Hassal’s corpuscules in thymoma were negative for LAMPs, but positive in normal thymus. Both lymphocytes and epithelial cells in pathological thymus showed higher intensity for LAMP-2 compared with LAMP-1. (PMID:19343823)
- Impaired autolysosome formation correlates with Lamp-2 depletion: role of apoptosis, autophagy, and necrosis in pancreatitis. (PMID:19362087)
- Data show that The cell surface expression levels of (ICAM)-2 and -3 on the apoptotic cells were markedly lower, while those of calnexin, calreticulin, and (LAMP)-1 and -2 were significantly higher compared to non-apoptotic cells. (PMID:19524015)
- Mutational analysis of PRKAG2, LAMP2, and NKX2-5 genes in a cohort of 125 patients with accessory atrioventricular connection. (PMID:19533775)
- Data show that the BCG phagosome is relatively depleted in LAMP-2, NPC1, flotillin-1, vATPase, and syntaxin 3. (PMID:19815536)
- The LAMP2 microdeletion mechanism appears to involve 1 Alu-mediated unequal recombination and 2 chromosomal breakage points involving TA-rich repeat sequences. (PMID:20173215)
- Danon disease is caused by deficiency of lysosome-associated membrane protein-2 (LAMP-2). (PMID:20513107)
- gene deficient B cells exhibit altered MHC class II presentation of exogenous antigens (PMID:20518820)
- Lysosome-associated membrane protein (LAMP2) cardiomyopathy is an X-linked and highly progressive myocardial storage disorder associated with diminished survival, which clinically resembles sarcomeric hypertrophic cardiomyopathy. (PMID:20920663)
- Immunohistochemistry studies showed EGBs to exhibit pronounced reactivity to antibodies against lysosome-associated membrane proteins (LAMP)-1 and LAMP-2, and the lysosomal enzyme cathepsin D. (PMID:20926008)
- intrafamilial phenotypic variability in Danon disease is related to a novel LAMP-2 mutation (PMID:21161685)
- Peripheral leukocyte LAMP-2 expression is significantly inceased in coronary artery disease. (PMID:21462217)
- decreased LAMP-2 gene expression and increased LC3 gene expression may contribute to the pathogenesis of sporadic Parkinson’s disease (PMID:21514572)
- A novel LAMP2 mutation (c.940delG) in Danon disease patients, which results in a putatively truncated protein. (PMID:22365987)
- findings indicated that patients with Danon disease caused by mutations in exon 1 - 8 manifested as a typically severe phenotype, while patients with mutations in exon 9 of the LAMP2B isoform presented with a relatively benign phenotype (PMID:22541782)
- LAMP proteins retain TAPL on the limiting membrane of endosomes and prevent its sorting to intraluminal vesicles. (PMID:22641697)
- There is a progressive, age-related decrease of LAMP-2 gene expression in the peripheral leukocytes of healthy subjects, indicating a trend of decreasing autophagy activities with aging. (PMID:22732524)
- variants within LAMP-2 gene promoter may be linked to Parkinson disease. (PMID:22867958)
- expression of LAMP2A was observed in breast tumor tissues of all patients under investigation, suggesting a survival mechanism via chaperone-mediated autophagy and LAMP2A. (PMID:22874552)
- Studies suggest that Hsc70 and lysosome-associated protein 2A (LAMP-2A) through chaperone-mediated autophagy (CMA) play a role in the clearance of Htt and suggest a novel strategy to target the degradation of mutant huntingtin (Htt). (PMID:23071649)
- Decreased levels of the chaperone-mediated autophagy proteins LAMP-2A and hsc70 (CMA) in Parkinson’s disease brain samples suggests compromised alpha-synuclein degradation by CMA and may underpin the Lewy body pathology. (PMID:23492776)
- indicate that monoclonal antibodies specific to CD107a (LAMP-1) or CD107b (LAMP-2) enhanced LPS-induced IL-8 secretion of THP-1 cells. (PMID:23603048)
- These data support a positive relationship between anti-LAMP-2 antibody and cutaneous vasculitis. (PMID:23704322)
- LAMP2 has a role in differentiation of primary biliary cirrhosis (PMID:24007661)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lamp2 | ENSDARG00000014914 |
| mus_musculus | Lamp2 | ENSMUSG00000016534 |
| rattus_norvegicus | Lamp2 | ENSRNOG00000000164 |
Paralogs (3): LAMP5 (ENSG00000125869), CD68 (ENSG00000129226), LAMP1 (ENSG00000185896)
Protein
Protein identifiers
Lysosome-associated membrane glycoprotein 2 — P13473 (reviewed: P13473)
Alternative names: CD107 antigen-like family member B, LGP-96
All UniProt accessions (3): P13473, A0A9L9PXQ4, H0YCG2
UniProt curated annotations — full annotation on UniProt →
Function. Lysosomal membrane glycoprotein which plays an important role in lysosome biogenesis, lysosomal pH regulation and autophagy. Acts as an important regulator of lysosomal lumen pH regulation by acting as a direct inhibitor of the proton channel TMEM175, facilitating lysosomal acidification for optimal hydrolase activity. Plays an important role in chaperone-mediated autophagy, a process that mediates lysosomal degradation of proteins in response to various stresses and as part of the normal turnover of proteins with a long biological half-live. Functions by binding target proteins, such as GAPDH, GPX4, NLRP3 and MLLT11, and targeting them for lysosomal degradation. In the chaperone-mediated autophagy, acts downstream of chaperones, such as HSPA8/HSC70, which recognize and bind substrate proteins and mediate their recruitment to lysosomes, where target proteins bind LAMP2. Plays a role in lysosomal protein degradation in response to starvation. Required for the fusion of autophagosomes with lysosomes during autophagy. Cells that lack LAMP2 express normal levels of VAMP8, but fail to accumulate STX17 on autophagosomes, which is the most likely explanation for the lack of fusion between autophagosomes and lysosomes. Required for normal degradation of the contents of autophagosomes. Required for efficient MHC class II-mediated presentation of exogenous antigens via its function in lysosomal protein degradation; antigenic peptides generated by proteases in the endosomal/lysosomal compartment are captured by nascent MHC II subunits. Is not required for efficient MHC class II-mediated presentation of endogenous antigens. Modulates chaperone-mediated autophagy. Decreases presentation of endogenous antigens by MHCII. Does not play a role in the presentation of exogenous and membrane-derived antigens by MHCII. (Microbial infection) Supports the FURIN-mediated cleavage of mumps virus fusion protein F by interacting with both FURIN and the unprocessed form but not the processed form of the viral protein F.
Subunit / interactions. Monomer. Homodimer. Homotrimer. Forms large homooligomers. Interacts (via its cytoplasmic region) with HSPA8; HSPA8 mediates recruitment of proteins with a KFERQ motif to the surface of the lysosome for chaperone-mediated autophagy. Interacts with HSP90 in the lysosome lumen; this enhances LAMP2 stability. Interacts with MLLT11. Interacts with ABCB9. Interacts with FURIN. Interacts with CT55; this interaction may be important for LAMP2 protein stability. Interacts with TMEM175; inhibiting the proton channel activity of TMEM175. Forms a ternary complex with RAB7A and RUFY4 (via RUN domain); the interaction with RAB7A is mediated by RUFY4 (via RUN and coiled coil domains). (Microbial infection) Interacts with mumps virus protein F; this interaction promotes protein F cleavage by FURIN.
Subcellular location. Lysosome membrane. Endosome membrane. Cell membrane. Cytoplasmic vesicle. Autophagosome membrane.
Tissue specificity. Isoform LAMP-2A is highly expressed in placenta, lung and liver, less in kidney and pancreas, low in brain and skeletal muscle. Isoform LAMP-2B is detected in spleen, thymus, prostate, testis, small intestine, colon, skeletal muscle, brain, placenta, lung, kidney, ovary and pancreas and liver. Isoform LAMP-2C is detected in small intestine, colon, heart, brain, skeletal muscle, and at lower levels in kidney and placenta.
Post-translational modifications. O- and N-glycosylated; some of the 16 N-linked glycans are polylactosaminoglycans.
Disease relevance. Danon disease (DAND) [MIM:300257] DAND is a lysosomal glycogen storage disease characterized by the clinical triad of cardiomyopathy, vacuolar myopathy and intellectual disability. It is often associated with an accumulation of glycogen in muscle and lysosomes. The disease is caused by variants affecting the gene represented in this entry.
Induction. In peripheral blood B cells isoform LAMP-2A, LAMP-2B and LAMP-2C are up-regulated in response to treatments that stimulate immune responses via the Toll-like receptors TLR7 or TLR9.
Similarity. Belongs to the LAMP family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P13473-1 | LAMP-2A | yes |
| P13473-2 | LAMP-2B | |
| P13473-3 | LAMP-2C |
RefSeq proteins (3): NP_001116078, NP_002285, NP_054701 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002000 | Lysosome-assoc_membr_glycop | Family |
| IPR018134 | LAMP_CS | Conserved_site |
| IPR048524 | Lamp2-like_TM | Domain |
| IPR048528 | Lamp2-like_luminal | Domain |
Pfam: PF01299, PF21222
UniProt features (57 total): glycosylation site 26, sequence conflict 9, region of interest 5, disulfide bond 4, topological domain 2, splice variant 2, sequence variant 2, signal peptide 1, chain 1, compositionally biased region 1, transmembrane region 1, mutagenesis site 1, strand 1, helix 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2MOF | SOLUTION NMR | |
| 2MOM | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P13473-F1 | 83.54 | 0.60 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (4): 41–79, 153–189, 232–265, 331–368
Glycosylation sites (26): 32, 38, 49, 58, 75, 101, 123, 179, 195, 196, 200, 203, 204, 207, 209, 210, 211, 213, 229, 242 …
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 401–404 | impairs binding and subsequent lysosomal degradation of target proteins, such as gapdh. |
Function
Pathways and Gene Ontology
Reactome pathways
9 pathways
| ID | Pathway |
|---|---|
| R-HSA-114608 | Platelet degranulation |
| R-HSA-6798695 | Neutrophil degranulation |
| R-HSA-9613829 | Chaperone Mediated Autophagy |
| R-HSA-109582 | Hemostasis |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-76002 | Platelet activation, signaling and aggregation |
| R-HSA-76005 | Response to elevated platelet cytosolic Ca2+ |
| R-HSA-9612973 | Autophagy |
MSigDB gene sets: 511 (showing top):
GOBP_NEGATIVE_REGULATION_OF_PROTEIN_CONTAINING_COMPLEX_ASSEMBLY, SHEPARD_BMYB_MORPHOLINO_UP, BORCZUK_MALIGNANT_MESOTHELIOMA_UP, HORIUCHI_WTAP_TARGETS_DN, REACTOME_INNATE_IMMUNE_SYSTEM, MORF_MBD4, GOBP_LYSOSOMAL_TRANSPORT, GOBP_VACUOLE_ORGANIZATION, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, GOBP_INFLAMMATORY_RESPONSE, GOCC_VACUOLAR_MEMBRANE, TGCACTT_MIR519C_MIR519B_MIR519A, GOCC_SECRETORY_GRANULE, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, SP3_Q3
GO Biological Process (18): protein targeting (GO:0006605), lysosomal lumen acidification (GO:0007042), cellular response to starvation (GO:0009267), protein import (GO:0017038), protein catabolic process (GO:0030163), negative regulation of protein-containing complex assembly (GO:0031333), regulation of protein stability (GO:0031647), muscle cell cellular homeostasis (GO:0046716), protein stabilization (GO:0050821), chaperone-mediated autophagy (GO:0061684), protein targeting to lysosome involved in chaperone-mediated autophagy (GO:0061740), autophagosome maturation (GO:0097352), positive regulation of ferroptosis (GO:0160020), negative regulation of NLRP3 inflammasome complex assembly (GO:1900226), lysosomal protein catabolic process (GO:1905146), autophagy (GO:0006914), lysosomal lumen pH elevation (GO:0035752), proton transmembrane transport (GO:1902600)
GO Molecular Function (6): ion channel inhibitor activity (GO:0008200), enzyme binding (GO:0019899), protein domain specific binding (GO:0019904), protein-macromolecule adaptor activity (GO:0030674), signaling adaptor activity (GO:0035591), protein binding (GO:0005515)
GO Cellular Component (22): autophagosome membrane (GO:0000421), obsolete extracellular space (GO:0005615), lysosome (GO:0005764), lysosomal membrane (GO:0005765), late endosome (GO:0005770), trans-Golgi network (GO:0005802), plasma membrane (GO:0005886), membrane (GO:0016020), phagocytic vesicle membrane (GO:0030670), platelet dense granule membrane (GO:0031088), late endosome membrane (GO:0031902), azurophil granule membrane (GO:0035577), lysosomal lumen (GO:0043202), autolysosome (GO:0044754), perinuclear region of cytoplasm (GO:0048471), chaperone-mediated autophagy translocation complex (GO:0061742), extracellular exosome (GO:0070062), ficolin-1-rich granule membrane (GO:0101003), endosome (GO:0005768), endosome membrane (GO:0010008), cytoplasmic vesicle (GO:0031410), membrane microdomain (GO:0098857)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| Response to elevated platelet cytosolic Ca2+ | 1 |
| Innate Immune System | 1 |
| Autophagy | 1 |
| Immune System | 1 |
| Hemostasis | 1 |
| Platelet activation, signaling and aggregation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| lysosome | 3 |
| protein binding | 3 |
| secretory granule membrane | 3 |
| signaling receptor binding | 2 |
| protein-folding chaperone binding | 2 |
| endosome | 2 |
| cellular anatomical structure | 2 |
| lysosomal membrane | 2 |
| establishment of protein localization | 1 |
| vacuolar acidification | 1 |
| cellular response to nutrient levels | 1 |
| cellular response to stress | 1 |
| response to starvation | 1 |
| protein transport | 1 |
| macromolecule catabolic process | 1 |
| protein metabolic process | 1 |
| regulation of protein-containing complex assembly | 1 |
| negative regulation of cellular component organization | 1 |
| protein-containing complex assembly | 1 |
| regulation of biological quality | 1 |
| cellular homeostasis | 1 |
| regulation of protein stability | 1 |
| autophagy | 1 |
| protein catabolic process | 1 |
| protein carrier activity | 1 |
| protein targeting to lysosome | 1 |
| chaperone-mediated autophagy | 1 |
| protein targeting to vacuole involved in autophagy | 1 |
| macroautophagy | 1 |
| protein-containing complex disassembly | 1 |
| positive regulation of programmed cell death | 1 |
| ferroptosis | 1 |
| regulation of ferroptosis | 1 |
| negative regulation of protein-containing complex assembly | 1 |
| NLRP3 inflammasome complex assembly | 1 |
| negative regulation of inflammasome-mediated signaling pathway | 1 |
| regulation of NLRP3 inflammasome complex assembly | 1 |
| protein catabolic process in the vacuole | 1 |
| catabolic process | 1 |
| transmembrane transport | 1 |
Protein interactions and networks
STRING
3114 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LAMP2 | CD63 | P08962 | 986 |
| LAMP2 | LAMP1 | P11279 | 904 |
| LAMP2 | ABCB9 | Q9NP78 | 899 |
| LAMP2 | SQSTM1 | Q13501 | 867 |
| LAMP2 | EEA1 | Q15075 | 853 |
| LAMP2 | CTSD | P07339 | 839 |
| LAMP2 | FIG4 | Q92562 | 820 |
| LAMP2 | PRKAG2 | Q9UGJ0 | 817 |
| LAMP2 | BECN1 | Q14457 | 794 |
| LAMP2 | RAB5A | P20339 | 789 |
| LAMP2 | HSPA4 | P34932 | 787 |
| LAMP2 | MAP1LC3A | Q9H492 | 786 |
| LAMP2 | VAC14 | Q08AM6 | 784 |
| LAMP2 | NAAA | Q02083 | 772 |
| LAMP2 | LAPTM5 | Q13571 | 754 |
IntAct
55 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| IFT27 | IFT56 | psi-mi:“MI:0914”(association) | 0.690 |
| SFXN5 | CTSA | psi-mi:“MI:0914”(association) | 0.640 |
| LGALS1 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| TRUB2 | HSPD1 | psi-mi:“MI:0914”(association) | 0.530 |
| GTPBP8 | HSPD1 | psi-mi:“MI:0914”(association) | 0.530 |
| LAMP2 | LRRK2 | psi-mi:“MI:0403”(colocalization) | 0.460 |
| LRRK2 | LAMP2 | psi-mi:“MI:0915”(physical association) | 0.460 |
| LAMP2 | WDR31 | psi-mi:“MI:0915”(physical association) | 0.400 |
| LAMP2 | RRAGB | psi-mi:“MI:0915”(physical association) | 0.400 |
| LAMP2 | APLNR | psi-mi:“MI:0915”(physical association) | 0.370 |
| PIAS4 | LAMP2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| HSCB | RBP5 | psi-mi:“MI:0914”(association) | 0.350 |
| ESR1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| JMJD4 | SPTLC1 | psi-mi:“MI:0914”(association) | 0.350 |
| TEX101 | PSMD12 | psi-mi:“MI:0914”(association) | 0.350 |
| TEX101 | NDUFA4 | psi-mi:“MI:0914”(association) | 0.350 |
| TEX101 | GGT3P | psi-mi:“MI:0914”(association) | 0.350 |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| TAGLN | LOC392647 | psi-mi:“MI:0914”(association) | 0.350 |
| VPS37C | psi-mi:“MI:0914”(association) | 0.350 | |
| PLEKHM1 | STX7 | psi-mi:“MI:0914”(association) | 0.350 |
| NPC1 | psi-mi:“MI:0914”(association) | 0.350 | |
| ATP6V1A | psi-mi:“MI:0914”(association) | 0.350 | |
| HLA-C | psi-mi:“MI:0914”(association) | 0.350 | |
| Npc1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| CLDN2 | AP2A1 | psi-mi:“MI:0914”(association) | 0.350 |
| CANX | HLA-A | psi-mi:“MI:0914”(association) | 0.350 |
| LAMP2 | MSN | psi-mi:“MI:0914”(association) | 0.350 |
| OTULIN | SULT1C2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (669): LAMP2 (Affinity Capture-MS), LAMP2 (Proximity Label-MS), LAMP2 (Affinity Capture-Western), BRF2 (Affinity Capture-MS), LAMP2 (Affinity Capture-MS), LAMP2 (Affinity Capture-MS), MTG2 (Affinity Capture-MS), CDC6 (Affinity Capture-MS), NEK6 (Affinity Capture-MS), STK39 (Affinity Capture-MS), TAMM41 (Affinity Capture-MS), CYP2S1 (Affinity Capture-MS), GUF1 (Affinity Capture-MS), HSPA12A (Affinity Capture-MS), HELLS (Affinity Capture-MS)
ESM2 similar proteins: A1L2K1, A4FV27, A4IGL3, A7E2Z9, A8WFR0, B0S5G3, L7VG99, O14525, O43556, O54715, O70258, O70367, O75829, O77049, O77770, O88823, P05300, P13473, P17046, P17047, P17404, P40682, P49130, Q15904, Q29S03, Q4R5B1, Q5PPI4, Q5R5V2, Q5RAP2, Q5VW38, Q61137, Q6AXF6, Q6Q3F5, Q6YAT4, Q6ZQE4, Q8BXN9, Q8NBN3, Q8VDA1, Q90617, Q9D387
Diamond homologs: P05300, P11279, P11438, P13473, P14562, P17046, P17047, P31996, P49129, P49130, Q05204, Q90617, P34810, Q8MJJ2, Q9UQV4, Q5XI99, Q7TST5
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| FBXO27 | “down-regulates quantity by destabilization” | LAMP2 | binding |
| “Cullin 1-RBX1-Skp1” | “down-regulates quantity by destabilization” | LAMP2 | polyubiquitination |
| LAMP2 | “up-regulates activity” | “Chaperone-mediated autophagy” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
950 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 117 |
| Likely pathogenic | 29 |
| Uncertain significance | 296 |
| Likely benign | 224 |
| Benign | 63 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1012342 | NM_002294.3(LAMP2):c.139C>T (p.Gln47Ter) | Pathogenic |
| 1029437 | NM_002294.3(LAMP2):c.614_615del (p.Val205fs) | Pathogenic |
| 1064624 | NM_002294.3(LAMP2):c.928+3A>T | Pathogenic |
| 1065183 | NM_002294.3(LAMP2):c.668dup (p.Tyr223Ter) | Pathogenic |
| 1072236 | NC_000023.10:g.(?119565168)(119603034_?)del | Pathogenic |
| 1074071 | NM_002294.3(LAMP2):c.646G>T (p.Glu216Ter) | Pathogenic |
| 1075078 | NM_002294.3(LAMP2):c.929-197_1070del | Pathogenic |
| 1220164 | NM_002294.3(LAMP2):c.181del (p.Tyr61fs) | Pathogenic |
| 1300025 | NM_002294.3(LAMP2):c.864+4A>G | Pathogenic |
| 1323186 | NM_002294.3(LAMP2):c.64G>T (p.Gly22Ter) | Pathogenic |
| 1323203 | NM_002294.3(LAMP2):c.467T>G (p.Leu156Ter) | Pathogenic |
| 1323222 | NM_002294.3(LAMP2):c.183+2T>C | Pathogenic |
| 1323223 | NM_002294.3(LAMP2):c.327T>A (p.Tyr109Ter) | Pathogenic |
| 1329242 | NM_002294.3(LAMP2):c.107C>G (p.Ser36Ter) | Pathogenic |
| 1369085 | NM_002294.3(LAMP2):c.955del (p.Ser319fs) | Pathogenic |
| 1398614 | NM_002294.3(LAMP2):c.54C>A (p.Cys18Ter) | Pathogenic |
| 1451509 | NM_002294.3(LAMP2):c.1041del (p.Phe348fs) | Pathogenic |
| 1452436 | NM_002294.3(LAMP2):c.928G>C (p.Val310Leu) | Pathogenic |
| 1459080 | NM_002294.3(LAMP2):c.391del (p.Asp131fs) | Pathogenic |
| 1514744 | NM_002294.3(LAMP2):c.741+2T>A | Pathogenic |
| 1523103 | NM_002294.3(LAMP2):c.1A>C (p.Met1Leu) | Pathogenic |
| 163812 | NM_002294.3(LAMP2):c.877C>T (p.Arg293Ter) | Pathogenic |
| 163813 | NM_002294.3(LAMP2):c.864+1G>T | Pathogenic |
| 1676381 | NM_002294.3(LAMP2):c.344C>A (p.Ser115Ter) | Pathogenic |
| 1685922 | NM_002294.3(LAMP2):c.436_440dup (p.Leu147fs) | Pathogenic |
| 1698512 | NC_000023.10:g.(?119560002)(119603205_?)del | Pathogenic |
| 1734193 | NM_002294.3(LAMP2):c.371_375del (p.Thr124fs) | Pathogenic |
| 178999 | NM_002294.3(LAMP2):c.1020del (p.Gly341fs) | Pathogenic |
| 179062 | NM_002294.3(LAMP2):c.121del (p.Cys41fs) | Pathogenic |
| 179126 | NM_002294.3(LAMP2):c.851_852del (p.Phe284fs) | Pathogenic |
SpliceAI
1702 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:120441895:C:CC | acceptor_gain | 1.0000 |
| X:120446332:A:AC | donor_gain | 1.0000 |
| X:120446333:A:C | donor_gain | 1.0000 |
| X:120447837:ATAC:A | donor_gain | 1.0000 |
| X:120447839:A:C | donor_loss | 1.0000 |
| X:120447840:C:CG | donor_loss | 1.0000 |
| X:120447844:AT:A | donor_gain | 1.0000 |
| X:120447845:T:C | donor_gain | 1.0000 |
| X:120448022:AACT:A | acceptor_gain | 1.0000 |
| X:120448024:CT:C | acceptor_gain | 1.0000 |
| X:120448026:C:CC | acceptor_gain | 1.0000 |
| X:120448026:CTAAA:C | acceptor_loss | 1.0000 |
| X:120448027:T:C | acceptor_loss | 1.0000 |
| X:120448032:C:CT | acceptor_gain | 1.0000 |
| X:120448036:C:CT | acceptor_gain | 1.0000 |
| X:120448037:G:T | acceptor_gain | 1.0000 |
| X:120448966:TCA:T | donor_loss | 1.0000 |
| X:120448967:CA:C | donor_loss | 1.0000 |
| X:120448968:A:AC | donor_gain | 1.0000 |
| X:120448968:AC:A | donor_gain | 1.0000 |
| X:120448969:C:CC | donor_gain | 1.0000 |
| X:120448969:CC:C | donor_gain | 1.0000 |
| X:120449129:C:CA | acceptor_loss | 1.0000 |
| X:120449129:C:CC | acceptor_gain | 1.0000 |
| X:120449130:T:G | acceptor_loss | 1.0000 |
| X:120455351:GGTTA:G | donor_loss | 1.0000 |
| X:120455352:GTTAC:G | donor_loss | 1.0000 |
| X:120455353:TTACC:T | donor_loss | 1.0000 |
| X:120455354:TACCT:T | donor_loss | 1.0000 |
| X:120455355:A:T | donor_loss | 1.0000 |
AlphaMissense
2689 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| X:120441831:C:G | C331S | 0.998 |
| X:120441832:A:T | C331S | 0.998 |
| X:120441832:A:G | C331R | 0.997 |
| X:120431452:G:C | C368W | 0.996 |
| X:120431453:C:G | C368S | 0.996 |
| X:120431453:C:T | C368Y | 0.996 |
| X:120431454:A:G | C368R | 0.996 |
| X:120431454:A:T | C368S | 0.996 |
| X:120441768:A:T | V352D | 0.996 |
| X:120441830:G:C | C331W | 0.996 |
| X:120447866:A:G | L239P | 0.996 |
| X:120441762:G:T | P354H | 0.995 |
| X:120441831:C:T | C331Y | 0.995 |
| X:120442645:A:C | F294L | 0.995 |
| X:120442645:A:T | F294L | 0.995 |
| X:120442647:A:G | F294L | 0.995 |
| X:120447860:A:G | L241P | 0.995 |
| X:120447863:T:G | Q240P | 0.995 |
| X:120441758:G:C | F355L | 0.994 |
| X:120441758:G:T | F355L | 0.994 |
| X:120441760:A:G | F355L | 0.994 |
| X:120441765:T:G | Q353P | 0.994 |
| X:120441774:A:G | L350P | 0.994 |
| X:120441831:C:A | C331F | 0.994 |
| X:120441838:A:C | Y329D | 0.994 |
| X:120442640:A:G | L296P | 0.994 |
| X:120447878:G:T | A235D | 0.994 |
| X:120447879:C:G | A235P | 0.994 |
| X:120431453:C:A | C368F | 0.993 |
| X:120441841:A:G | S328P | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000213846 (X:120434429 A>G), RS1000269978 (X:120438417 A>G), RS1000312356 (X:120455277 A>C), RS1000438881 (X:120468204 G>C), RS1000528539 (X:120433129 C>T), RS1000605973 (X:120440637 T>C), RS1000679373 (X:120441042 C>T), RS1000817865 (X:120431789 G>A), RS1000877206 (X:120429436 G>A), RS1000903133 (X:120450573 A>G), RS1000919192 (X:120458359 A>G), RS1001044275 (X:120445990 T>C), RS1001337984 (X:120436567 G>A), RS1001394228 (X:120459228 T>C), RS1001570359 (X:120436772 T>C)
Disease associations
OMIM: gene MIM:309060 | disease phenotypes: MIM:300257, MIM:192600
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Danon disease | Definitive | X-linked |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Danon disease | Definitive | XL |
Mondo (6): Danon disease (MONDO:0010281), dilated cardiomyopathy (MONDO:0005021), cardiomyopathy (MONDO:0004994), hypertrophic cardiomyopathy (MONDO:0005045), familial hypertrophic cardiomyopathy (MONDO:0024573), intellectual disability (MONDO:0001071)
Orphanet (7): Danon disease (Orphanet:34587), Dilated cardiomyopathy (Orphanet:217604), Rare cardiomyopathy (Orphanet:167848), Rare hypertrophic cardiomyopathy (Orphanet:217569), Rare familial disorder with hypertrophic cardiomyopathy (Orphanet:99739), NON RARE IN EUROPE: Familial isolated hypertrophic cardiomyopathy (Orphanet:155), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
37 total (30 of 37 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000505 | Visual impairment |
| HP:0001249 | Intellectual disability |
| HP:0001263 | Global developmental delay |
| HP:0001279 | Syncope |
| HP:0001288 | Gait disturbance |
| HP:0001324 | Muscle weakness |
| HP:0001423 | X-linked dominant inheritance |
| HP:0001635 | Congestive heart failure |
| HP:0001639 | Hypertrophic cardiomyopathy |
| HP:0001640 | Cardiomegaly |
| HP:0001644 | Dilated cardiomyopathy |
| HP:0001678 | Atrioventricular block |
| HP:0001685 | Myocardial fibrosis |
| HP:0001692 | Atrial arrhythmia |
| HP:0001700 | Myocardial necrosis |
| HP:0001716 | Wolff-Parkinson-White syndrome |
| HP:0001761 | Pes cavus |
| HP:0002375 | Hypokinesia |
| HP:0002460 | Distal muscle weakness |
| HP:0003236 | Elevated circulating creatine kinase concentration |
| HP:0003458 | EMG: myopathic abnormalities |
| HP:0003546 | Exercise intolerance |
| HP:0003621 | Juvenile onset |
| HP:0003690 | Limb muscle weakness |
| HP:0003700 | Generalized amyotrophy |
| HP:0003701 | Proximal muscle weakness |
| HP:0003710 | Exercise-induced muscle cramps |
| HP:0004756 | Ventricular tachycardia |
| HP:0006543 | Cardiorespiratory arrest |
| HP:0007210 | Lower limb amyotrophy |
GWAS associations
0 associations (top):
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009202 | Cardiomyopathies | C14.280.238 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| D024741 | Cardiomyopathy, Hypertrophic, Familial | C14.280.238.100.500; C14.280.484.048.750.070.160.500; C16.320.160 |
| D052120 | Glycogen Storage Disease Type IIb | C10.597.606.360.455.562; C14.280.238.458; C16.320.322.201; C16.320.565.202.449.510; C18.452.648.202.449.510 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5465542 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
4 potent at pChembl≥5 of 4 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.42 | Kd | 37.83 | nM | CHEMBL3752910 |
| 7.42 | ED50 | 37.83 | nM | CHEMBL3752910 |
| 5.76 | Kd | 1718 | nM | CHEMBL5653589 |
| 5.76 | ED50 | 1718 | nM | CHEMBL5653589 |
PubChem BioAssay actives
2 with measured affinity, of 5 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148636: Binding affinity to human LAMP2 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0378 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148636: Binding affinity to human LAMP2 incubated for 45 mins by Kinobead based pull down assay | kd | 1.7184 | uM |
CTD chemical–gene interactions
92 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression | 5 |
| Benzo(a)pyrene | decreases expression, increases methylation, increases reaction, decreases reaction, increases expression | 4 |
| Tretinoin | increases expression, increases reaction | 4 |
| methylmercuric chloride | increases expression, affects cotreatment | 3 |
| bisphenol A | affects cotreatment, increases methylation, decreases expression | 3 |
| trichostatin A | increases expression, affects cotreatment | 3 |
| sodium arsenite | decreases expression, increases abundance, increases expression | 3 |
| mercuric bromide | affects cotreatment, increases expression | 2 |
| entinostat | increases expression, affects cotreatment | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment | 2 |
| Panobinostat | increases expression, affects cotreatment | 2 |
| Air Pollutants | affects expression, increases abundance, decreases expression | 2 |
| Atrazine | affects cotreatment, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, affects cotreatment | 2 |
| aristolochic acid I | decreases expression | 1 |
| spautin-1 | affects cotreatment, affects localization, affects reaction, increases transport | 1 |
| 1-cyclopropyl-4-(4-((5-methyl-3-(3-(4-(trifluoromethoxy)phenyl)-1,2,4-oxadiazol-5-yl)-1H-pyrazol-1-yl)methyl)pyridin-2-yl)piperazine | decreases reaction, increases expression | 1 |
| bisphenol F | increases expression | 1 |
| dicrotophos | decreases expression | 1 |
| beauvericin | decreases expression, affects cotreatment | 1 |
| triphenyl phosphate | affects expression | 1 |
| uranyl acetate | affects expression | 1 |
| 2-methyl-4-isothiazolin-3-one | increases expression | 1 |
| dodecyldimethylamine oxide | increases expression | 1 |
| beta-lapachone | increases expression | 1 |
| arsenite | decreases expression, increases abundance | 1 |
| sulforaphane | increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5338453 | Binding | Binding affinity to Lamp2 (unknown origin) assessed as fold change in protein upregulation at 200 uM preincubated for 2 hrs followed by pronase addition and measured after 30 mins by coomassie blue staining based SDS-PAGE gel analysis | Structurally Diverse Alkaloids with Anti-Renal-Fibrosis Activity from the Centipede Scolopendra subspinipes mutilans. — J Nat Prod |
Cellosaurus cell lines
12 cell lines: 9 cancer cell line, 2 transformed cell line, 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A1NE | NJDTHi001-A | Induced pluripotent stem cell | Male |
| CVCL_B1B6 | Abcam HEK293 LAMP2 KO | Transformed cell line | Female |
| CVCL_B1VJ | Abcam HeLa LAMP2 KO | Cancer cell line | Female |
| CVCL_B7XY | Abcam Raji LAMP2 KO | Cancer cell line | Male |
| CVCL_B9YN | Abcam THP-1 LAMP2 KO | Cancer cell line | Male |
| CVCL_C7AF | Abcam PC-3 LAMP2 KO | Cancer cell line | Male |
| CVCL_D1TF | Abcam U-87MG LAMP2 KO | Cancer cell line | Male |
| CVCL_D5EY | HeLa::TMEM192-3xHA LAMP2 KO | Cancer cell line | Female |
| CVCL_D9IC | Ubigene HEK293 LAMP2 KO | Transformed cell line | Female |
| CVCL_E1DT | Ubigene U2OS LAMP2 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
165 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00374465 | PHASE4 | UNKNOWN | Therapy With Verapamil or Carvedilol in Chronic Heart Failure |
| NCT01293903 | PHASE4 | COMPLETED | Study of Qiliqiangxin Capsule to Treat Dilated Cardiomyopathy |
| NCT01557140 | PHASE4 | COMPLETED | A Randomized Trial of Carvedilol in Chronic Chagas Cardiomyopathy |
| NCT01917149 | PHASE4 | COMPLETED | Supramaximal Titrated Inhibition of RAAS in Dilated Cardiomyopathy |
| NCT02115581 | PHASE4 | COMPLETED | Coenzyme Q10 Supplementation in Children With Idiopathic Dilated Cardiomyopathy |
| NCT06236022 | PHASE4 | RECRUITING | The Effects of Sirolimus in Patients With Dilated Cardiomyopathy Infected With Kaposi Sarcoma-associated Virus |
| NCT00333827 | PHASE3 | COMPLETED | Cell Therapy In Dilated Cardiomyopathy |
| NCT00505154 | PHASE3 | COMPLETED | Effect of Rosuvastatin on Left Ventricular Remodeling |
| NCT01223703 | PHASE3 | COMPLETED | PUFAs and Left Ventricular Function in Heart Failure |
| NCT01583114 | PHASE3 | TERMINATED | PREclinical Mutation CARriers From Families With DIlated Cardiomyopathy and ACE Inhibitors |
| NCT01914081 | PHASE3 | UNKNOWN | Resveratrol: A Potential Anti- Remodeling Agent in Heart Failure, From Bench to Bedside |
| NCT02989181 | PHASE3 | UNKNOWN | Continues Positive Airway Pressure Treatment for Patients With Dilated Cardiomyopathy and Obstructive Sleep Apnea |
| NCT03439514 | PHASE3 | TERMINATED | A Study of ARRY-371797 (PF-07265803) in Patients With Symptomatic Dilated Cardiomyopathy Due to a Lamin A/C Gene Mutation |
| NCT05237323 | PHASE3 | COMPLETED | Micophenolate Mofetil Versus Azathioprine in Myocarditis |
| NCT05849766 | PHASE3 | COMPLETED | Effect of Dapagliflozin on Cardiac Structure, Function and Secondary Mitral Regurgitation in Patients with Left Ventricle Dysfunction |
| NCT06250257 | PHASE3 | RECRUITING | Bromocriptine in Dilated Cardiomyopathy Among Women of Reproductive Age |
| NCT06092034 | PHASE2 | RECRUITING | A Gene Therapy Study of RP-A501 in Male Patients With Danon Disease |
| NCT00629018 | PHASE2 | COMPLETED | Safety and Efficacy Study of Stem Cell Transplantation to Treat Dilated Cardiomyopathy |
| NCT00629096 | PHASE2 | COMPLETED | Intracoronary Infusion of Autologous Bone Marrow Cells for Treatment of Idiopathic Dilated Cardiomyopathy |
| NCT00765518 | PHASE2 | COMPLETED | Use of Ixmyelocel-T (Formerly Cardiac Repair Cell [CRC] Treatment) in Patients With Heart Failure Due to Dilated Cardiomyopathy (IMPACT-DCM) |
| NCT00847964 | PHASE2 | COMPLETED | Safety and Feasibility of Algisyl-LVR™ as a Method of Left Ventricular Restoration in Patients With DCM Undergoing Open-heart Surgery |
| NCT01020968 | PHASE2 | COMPLETED | Use of Ixmyelocel-T (Formerly Catheter-based Cardiac Repair Cell [CRC]) Treatment in Patients With Heart Failure Due to Dilated Cardiomyopathy |
| NCT01302171 | PHASE2 | COMPLETED | Bone Marrow Derived Adult Stem Cells for Dilated Cardiomyopathy |
| NCT01350310 | PHASE2 | COMPLETED | Safety and Efficacy Study of Intramyocardial Stem Cell Therapy in Patients With Dilated Cardiomyopathy |
| NCT02133911 | PHASE2 | COMPLETED | A Pilot Trial of Ranolazine to Treat Patients With Dilated Cardiomyopathy |
| NCT03071653 | PHASE2 | SUSPENDED | Left Cardiac Sympathetic Denervation for Cardiomyopathy Feasibility Pilot Study |
| NCT03572660 | PHASE2 | ACTIVE_NOT_RECRUITING | Use of Bone Marrow Derived Stem Cell and G-CSF With Circulatory Assistance in the Treatment of DCM |
| NCT03775070 | PHASE2 | COMPLETED | Simvastatin Therapy in Patients With Dilated Cardiomyopathy. |
| NCT04405804 | PHASE2 | UNKNOWN | Early Administration of Ivabradine in Children With Heart Failure |
| NCT05410873 | PHASE2 | COMPLETED | Examining the Effects of Mitochondrial Oxidative Stress in DCM |
| NCT06632834 | PHASE2 | RECRUITING | Outcome-targeted Therapy: Principle and Outcome Evaluation: Clinical Study and Phenotype-genotype Correlation |
| NCT03882437 | PHASE1 | UNKNOWN | Gene Therapy for Male Patients With Danon Disease (DD) Using RP-A501; AAV9.LAMP2B |
| NCT00585546 | PHASE1 | TERMINATED | Harefield Recovery Protocol Study for Patients With Refractory Chronic Heart Failure |
| NCT02293603 | PHASE1 | UNKNOWN | Dilated cardiomYopathy iNtervention With Allogeneic MyocardIally-regenerative Cells (DYNAMIC) |
| NCT03062956 | PHASE1 | COMPLETED | A Single Ascending Dose Study Assessing the Safety, Tolerability, PK and PD of MYK-491 |
| NCT03129568 | PHASE1 | COMPLETED | Transcoronary Infusion of Cardiac Progenitor Cells in Pediatric Dilated Cardiomyopathy |
| NCT04982081 | PHASE1 | UNKNOWN | Treating Congestive HF With hiPSC-CMs Through Endocardial Injection |
| NCT06381466 | PHASE1 | TERMINATED | A Study to Investigate Safety, Tolerability, and Pharmacokinetics of Oral AZD0233 Compared With Placebo in Healthy Adult Participants. |
| NCT06464588 | PHASE1 | RECRUITING | A Phase 1 Open-Label Study of the Safety of Intravenous Allogeneic Neonatal Mesenchymal Cells (nMSCs) in Young Adult (1A) and Pediatric (1B) Patients With Dilated Cardiomyopathy (DCM) |
| NCT06902896 | PHASE1 | COMPLETED | Safety and Efficacy of FAP iCDC in End-stage Dilated Cardiomyopathy |
Related Atlas pages
- Associated diseases: Danon disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Danon disease, familial hypertrophic cardiomyopathy