LBR
geneOn this page
Also known as DHCR14BTDRD18
Summary
LBR (lamin B receptor, HGNC:6518) is a protein-coding gene on chromosome 1q42.12, encoding Delta(14)-sterol reductase LBR (Q14739). Catalyzes the reduction of the C14-unsaturated bond of lanosterol, as part of the metabolic pathway leading to cholesterol biosynthesis.
The protein encoded by this gene belongs to the ERG4/ERG24 family. It localized in the nuclear envelope inner membrane and anchors the lamina and the heterochromatin to the membrane. It may mediate interaction between chromatin and lamin B. Mutations of this gene has been associated with autosomal recessive HEM/Greenberg skeletal dysplasia. Alternative splicing occurs at this locus and two transcript variants encoding the same protein have been identified.
Source: NCBI Gene 3930 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Greenberg dysplasia (Definitive, GenCC) — +2 more curated relationships
- GWAS associations: 5
- Clinical variants (ClinVar): 486 total — 21 pathogenic, 4 likely-pathogenic
- Phenotypes (HPO): 199
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_002296
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6518 |
| Approved symbol | LBR |
| Name | lamin B receptor |
| Location | 1q42.12 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DHCR14B, TDRD18 |
| Ensembl gene | ENSG00000143815 |
| Ensembl biotype | protein_coding |
| OMIM | 600024 |
| Entrez | 3930 |
Gene structure
Transcript identifiers
Ensembl transcripts: 30 — 25 protein_coding, 2 retained_intron, 2 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000272163, ENST00000338179, ENST00000421383, ENST00000424022, ENST00000425080, ENST00000441022, ENST00000487054, ENST00000488632, ENST00000651341, ENST00000885794, ENST00000885795, ENST00000885796, ENST00000885797, ENST00000885798, ENST00000885799, ENST00000885800, ENST00000885801, ENST00000885802, ENST00000885803, ENST00000933594, ENST00000933595, ENST00000933596, ENST00000933597, ENST00000945203, ENST00000945204, ENST00000945205, ENST00000945206, ENST00000945207, ENST00000945208, ENST00000945209
RefSeq mRNA: 2 — MANE Select: NM_002296
NM_002296, NM_194442
CCDS: CCDS1545
Canonical transcript exons
ENST00000272163 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000962089 | 225422077 | 225422277 |
| ENSE00001071015 | 225423911 | 225424089 |
| ENSE00001892518 | 225401502 | 225403463 |
| ENSE00001894160 | 225427954 | 225428038 |
| ENSE00002219018 | 225412454 | 225412645 |
| ENSE00002219833 | 225415278 | 225415332 |
| ENSE00002247606 | 225411337 | 225411440 |
| ENSE00002254361 | 225417984 | 225418180 |
| ENSE00002279308 | 225404626 | 225404706 |
| ENSE00002281815 | 225419715 | 225419798 |
| ENSE00002284747 | 225406664 | 225406832 |
| ENSE00002307138 | 225404404 | 225404526 |
| ENSE00003754323 | 225410291 | 225410416 |
| ENSE00003788743 | 225419263 | 225419452 |
Expression profiles
Bgee: expression breadth ubiquitous, 294 present calls, max score 98.89.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 41.1700 / max 834.4108, expressed in 1813 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 17691 | 39.1181 | 1813 |
| 17692 | 1.2233 | 682 |
| 17693 | 0.5910 | 330 |
| 17690 | 0.2377 | 108 |
Top tissues by expression
297 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| trabecular bone tissue | UBERON:0002483 | 98.89 | gold quality |
| bone marrow | UBERON:0002371 | 98.39 | gold quality |
| thymus | UBERON:0002370 | 98.10 | gold quality |
| bone marrow cell | CL:0002092 | 97.79 | gold quality |
| ventricular zone | UBERON:0003053 | 97.52 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 96.85 | gold quality |
| seminal vesicle | UBERON:0000998 | 96.82 | gold quality |
| vermiform appendix | UBERON:0001154 | 96.79 | gold quality |
| caecum | UBERON:0001153 | 96.72 | gold quality |
| sigmoid colon | UBERON:0001159 | 96.71 | gold quality |
| visceral pleura | UBERON:0002401 | 96.69 | gold quality |
| monocyte | CL:0000576 | 96.65 | gold quality |
| mononuclear cell | CL:0000842 | 96.65 | gold quality |
| leukocyte | CL:0000738 | 96.58 | gold quality |
| blood | UBERON:0000178 | 96.41 | gold quality |
| rectum | UBERON:0001052 | 96.35 | gold quality |
| colonic epithelium | UBERON:0000397 | 96.32 | gold quality |
| lymph node | UBERON:0000029 | 96.26 | gold quality |
| secondary oocyte | CL:0000655 | 96.25 | gold quality |
| pleura | UBERON:0000977 | 96.13 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 96.09 | gold quality |
| parietal pleura | UBERON:0002400 | 96.01 | gold quality |
| colonic mucosa | UBERON:0000317 | 95.98 | gold quality |
| embryo | UBERON:0000922 | 95.94 | gold quality |
| large intestine | UBERON:0000059 | 95.80 | gold quality |
| corpus epididymis | UBERON:0004359 | 95.80 | gold quality |
| cauda epididymis | UBERON:0004360 | 95.80 | gold quality |
| colon | UBERON:0001155 | 95.76 | gold quality |
| superficial temporal artery | UBERON:0001614 | 95.76 | gold quality |
| saphenous vein | UBERON:0007318 | 95.61 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.69 |
| E-CURD-88 | no | 3.71 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CEBPE, GLI2, MYC, NFKB, SP1
miRNA regulators (miRDB)
144 targeting LBR, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- The binding of lamin B receptor to chromatin is regulated by phosphorylation in the arginine-serine repeat-containing REGION (PMID:11846796)
- Mutations in the gene encoding the lamin B receptor produce an altered nuclear morphology in granulocytes (Pelger-Huet anomaly). (PMID:12118250)
- Autosomal recessive HEM/Greenberg skeletal dysplasia is caused by 3 beta-hydroxysterol delta 14-reductase deficiency due to mutations in this gene. (PMID:12618959)
- examination of temporal association with protamine 1 during spermiogenesis (PMID:14701833)
- SR protein kinase and cdc2 kinase regulate lamin B receptor binding to chromatin (PMID:14718546)
- MeCP2 interacts in vitro and in vivo with the inner nuclear membrane protein LBR, and the unstructured aminoacidic sequence linking the MBD and TRD domains of MeCP2 is responsible for this association. (PMID:19331822)
- results suggest that LMNA, ZMPSTE24, and LBR sequence variations are not major genetic determinants involved in scleroderma pathogenesis (PMID:19645629)
- LBR mutant variants and sterol reductases can severely interfere with the regular organization of the nuclear envelope and the endoplasmic reticulum. (PMID:19940018)
- LBR targets the membrane precursor vesicles to chromatin by interacting with importin beta in a LBR phosphorylation-dependent manner during the NE assembly at the end of mitosis (PMID:20576617)
- LBR is heavily expressed in papillary thyroid carcinoma cells, but an abnormal folding of the protein might explain its lack of immunohistochemical reactivity and be associated with the anomalous folding of the nuclear membrane. (PMID:21103616)
- a highly significant gene-dosage effect between the gene copy number and the nuclear segmentation index of neutrophils (PMID:21326950)
- LBR missense mutations can abolish sterol reductase activity, causing lethal Greenberg dysplasia but not Pelger anomaly (PMID:21327084)
- The LBR knockdown cells retain an ovoid shaped nucleus with reduced levels of lamin A/C during in vitro granulopoiesis induced with retinoic acid. (PMID:21327094)
- Our studies reveal for the first time a mechanism that controls the timing of nuclear envelope reassembly through modification of the integral nuclear membrane protein lamin B receptor (PMID:21795390)
- Lymphohematopoietic licence: sterol C-14 reductase activity of lamin B receptor (Lbr) is essential for neutrophil differentiation. (PMID:22581323)
- Mutation in LBR gene is associated with pelger-huet anomaly and a mild skeletal phenotype. (PMID:23824842)
- Lamin B receptor mRNA expression was directly associated with tumor grade in breast cancer patients(grade 1 vs. grade 3 - 0.00 vs. 0.00; p = 0.0479) and Nottingham Prognostic Index (NPI1 vs. NPI3 - 0.00 vs. 0.00; p = 0.0551). (PMID:24293108)
- We have shown here that lamin B receptor (LBR) showed a change in localization in both BrdU-induced and replicative senescent cells. (PMID:27059139)
- Data indicate that proto-oncogene protein c-akt (Akt) phosphorylates distinct sites than SRPK1 protein within the arginine-serine (RS) domain of Lamin B Receptor (LBR). (PMID:27105349)
- The authors demonstrate that human LBR is essential for cholesterol synthesis. (PMID:27336722)
- The primary response of cells to various stresses leading to senescence consists of the down-regulation of LBR and LB1 to attain reversal of the chromatin architecture. (PMID:27760841)
- These observations point to a new mechanism regulating the localization of LBR, which is governed by an ELYS-mediated phosphorylation network. (PMID:27802161)
- This report provides further evidence for a phenotypic spectrum of LBR-associated disorders and expands the genotypic spectrum by describing 3 novel disease-causing variants that have not been previously associated with a disease. (PMID:30448303)
- A common pathogenic mechanism in GMAP-210- and LBR-related diseases attributable to defective secretory trafficking at the Golgi apparatus. (PMID:30518689)
- LBR represents an instructive example of one gene presenting with two different patterns of inheritance and at least three different clinical phenotypes. (PMID:30561119)
- These results suggested that decreased LBR function is involved in the induction of cellular senescence in human cells. (PMID:30615890)
- MiR-222/LBR have key roles in controlling pro-progression influences of cancer-associated fibroblasts in breast cancer. (PMID:31481734)
- The c.893G>A (p.Gly298Glu) mutation in the LBR gene probably underlies the Pelger-Husmall io, Russiant anomaly in this pedigree (PMID:31515787)
- Lamin B receptor plays a key role in cellular senescence induced by inhibition of the proteasome. (PMID:31825172)
- Twin enzymes, divergent control: The cholesterogenic enzymes DHCR14 and LBR are differentially regulated transcriptionally and post-translationally. (PMID:31911440)
- The role of lamin B receptor in the regulation of senescence-associated secretory phenotype (SASP). (PMID:32126237)
- TMEM147 interacts with lamin B receptor, regulates its localization and levels, and affects cholesterol homeostasis. (PMID:32694168)
- A homozygous variant in the Lamin B receptor gene LBR results in a non-lethal skeletal dysplasia without Pelger-Huet anomaly. (PMID:32827848)
- Small heat-shock protein HSPB3 promotes myogenesis by regulating the lamin B receptor. (PMID:33958580)
- Reduction of lamin B receptor levels by miR-340-5p disrupts chromatin, promotes cell senescence and enhances senolysis. (PMID:34181735)
- Knockdown of Lamin B1 and the Corresponding Lamin B Receptor Leads to Changes in Heterochromatin State and Senescence Induction in Malignant Melanoma. (PMID:35883595)
- Nuclear envelope protein lamin B receptor protects the genome from chromosomal instability and tumorigenesis. (PMID:36124691)
- Natural history and genetic spectrum of the Turkish metaphyseal dysplasia cohort, including rare types caused by biallelic COL10A1, COL2A1, and LBR variants. (PMID:36400164)
- Differentiation-dependent changes in lamin B1 dynamics and lamin B receptor localization. (PMID:36598800)
- Upregulated expression of lamin B receptor increases cell proliferation and suppresses genomic instability: implications for cellular immortalization. (PMID:38462947)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lbr | ENSDARG00000014013 |
| mus_musculus | Lbr | ENSMUSG00000004880 |
| rattus_norvegicus | Lbr | ENSRNOG00000052574 |
Paralogs (2): TM7SF2 (ENSG00000149809), DHCR7 (ENSG00000172893)
Protein
Protein identifiers
Delta(14)-sterol reductase LBR — Q14739 (reviewed: Q14739)
Alternative names: 3-beta-hydroxysterol Delta (14)-reductase, C-14 sterol reductase, Integral nuclear envelope inner membrane protein, LMN2R, Lamin-B receptor, Sterol C14-reductase
All UniProt accessions (4): Q14739, A0A494C1L1, C9JES9, C9JXK0
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the reduction of the C14-unsaturated bond of lanosterol, as part of the metabolic pathway leading to cholesterol biosynthesis. Plays a critical role in myeloid cell cholesterol biosynthesis which is essential to both myeloid cell growth and functional maturation. Mediates the activation of NADPH oxidases, perhaps by maintaining critical levels of cholesterol required for membrane lipid raft formation during neutrophil differentiation. Anchors the lamina and the heterochromatin to the inner nuclear membrane.
Subunit / interactions. Interacts with CBX5. Interacts with DNA. Interaction with DNA is sequence independent with higher affinity for supercoiled and relaxed circular DNA than linear DNA. Interacts with lamin B. Interacts with CLNK. Interacts with TMEM147; promoting LBR localization to the nucleus inner membrane.
Subcellular location. Nucleus inner membrane. Endoplasmic reticulum membrane. Cytoplasm. Nucleus.
Tissue specificity. Expressed in the bone marrow, liver, heart, adrenal gland, lung, placenta and uterus. Expressed in osteoclasts and osteoblast-like cells.
Post-translational modifications. Phosphorylated by CDK1 in mitosis when the inner nuclear membrane breaks down into vesicles that dissociate from the lamina and the chromatin. It is phosphorylated by different protein kinases in interphase when the membrane is associated with these structures. Phosphorylation of LBR and HP1 proteins may be responsible for some of the alterations in chromatin organization and nuclear structure which occur at various times during the cell cycle. Phosphorylated by SRPK1. In late anaphase LBR is dephosphorylated, probably by PP1 and/or PP2A, allowing reassociation with chromatin.
Disease relevance. Pelger-Huet anomaly (PHA) [MIM:169400] An autosomal dominant inherited abnormality of granulocytes, characterized by abnormal ovoid shape, reduced nuclear segmentation and an apparently looser chromatin structure. The disease is caused by variants affecting the gene represented in this entry. Greenberg dysplasia (GRBGD) [MIM:215140] A rare autosomal recessive chondrodystrophy characterized by early in utero lethality. Affected fetuses typically present with fetal hydrops, short-limbed dwarfism, and a marked disorganization of chondro-osseous calcification, and ectopic ossification centers. The disease is caused by variants affecting the gene represented in this entry. Reynolds syndrome (REYNS) [MIM:613471] A syndrome specifically associating limited cutaneous systemic sclerosis and primary biliary cirrhosis. It is characterized by liver disease, telangiectasia, abrupt onset of digital paleness or cyanosis in response to cold exposure or stress (Raynaud phenomenon), and variable features of scleroderma. The liver disease is characterized by pruritis, jaundice, hepatomegaly, increased serum alkaline phosphatase and positive serum mitochondrial autoantibodies, all consistent with primary biliary cirrhosis. The disease may be caused by variants affecting the gene represented in this entry. Rhizomelic skeletal dysplasia with or without Pelger-Huet anomaly (SKPHA) [MIM:618019] A disease characterized by abnormal nuclear shape and chromatin organization in blood granulocytes, short stature, and mild skeletal anomalies. Initial skeletal features may improve with age. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The Tudor domain may not recognize methylation marks, but rather bind unassembled free histone H3.
Pathway. Steroid biosynthesis; cholesterol biosynthesis.
Similarity. Belongs to the ERG4/ERG24 family.
RefSeq proteins (2): NP_002287, NP_919424 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001171 | ERG24_DHCR-like | Family |
| IPR002999 | Tudor | Domain |
| IPR018083 | Sterol_reductase_CS | Conserved_site |
| IPR019023 | Lamin-B_rcpt_of_tudor | Domain |
Pfam: PF01222, PF09465
Enzyme classification (BRENDA):
- EC 1.3.1.70 — DELTA14-sterol reductase (BRENDA: 16 organisms, 57 substrates, 84 inhibitors, 12 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
5 substrates with measured Km, best-characterized 5. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| 4,4-DIMETHYL-5ALPHA-CHOLESTA-7,14-DIEN-3BETA-OL | 0.0294–0.0345 | 3 |
| NADPH | 0.023–0.6 | 2 |
| 4ALPHA-METHYL-5ALPHA-ERGOSTA-8,14,24(28)-TRIEN-3 | 0.1 | 1 |
| 5ALPHA-CHOLESTA-8,14-DIEN-3BETA-OL | 0.45 | 1 |
| ERGOSTA-8,14-DIEN-3BETA-OL | 0.06 | 1 |
Catalyzed reactions (Rhea), 3 shown:
- 4,4-dimethyl-5alpha-cholesta-8,24-dien-3beta-ol + NADP(+) = 4,4-dimethyl-5alpha-cholesta-8,14,24-trien-3beta-ol + NADPH + H(+) (RHEA:18561)
- 5alpha-cholest-8,14-dien-3beta-ol + NADPH + H(+) = 5alpha-cholest-8-en-3beta-ol + NADP(+) (RHEA:46456)
- 4,4-dimethyl-8,14-cholestadien-3beta-ol + NADPH + H(+) = 4,4-dimethyl-5alpha-cholest-8-en-3beta-ol + NADP(+) (RHEA:46812)
UniProt features (47 total): modified residue 13, sequence variant 11, transmembrane region 8, strand 4, sequence conflict 3, turn 3, chain 1, topological domain 1, domain 1, region of interest 1, compositionally biased region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2DIG | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q14739-F1 | 76.89 | 0.46 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (13): 55, 58, 59, 67, 71, 86, 97, 99, 118, 128, 200, 594, 601
Function
Pathways and Gene Ontology
Reactome pathways
29 pathways
| ID | Pathway |
|---|---|
| R-HSA-2995383 | Initiation of Nuclear Envelope (NE) Reformation |
| R-HSA-6807047 | Cholesterol biosynthesis via desmosterol (Bloch pathway) |
| R-HSA-8980692 | RHOA GTPase cycle |
| R-HSA-9013106 | RHOC GTPase cycle |
| R-HSA-9013148 | CDC42 GTPase cycle |
| R-HSA-9013149 | RAC1 GTPase cycle |
| R-HSA-9013404 | RAC2 GTPase cycle |
| R-HSA-9013405 | RHOD GTPase cycle |
| R-HSA-9013408 | RHOG GTPase cycle |
| R-HSA-9013423 | RAC3 GTPase cycle |
| R-HSA-9022692 | Regulation of MECP2 expression and activity |
| R-HSA-191273 | Cholesterol biosynthesis |
| R-HSA-1430728 | Metabolism |
| R-HSA-162582 | Signal Transduction |
| R-HSA-1640170 | Cell Cycle |
| R-HSA-194315 | Signaling by Rho GTPases |
| R-HSA-212436 | Generic Transcription Pathway |
| R-HSA-2555396 | Mitotic Metaphase and Anaphase |
| R-HSA-2995410 | Nuclear Envelope (NE) Reassembly |
| R-HSA-556833 | Metabolism of lipids |
| R-HSA-68882 | Mitotic Anaphase |
| R-HSA-68886 | M Phase |
| R-HSA-69278 | Cell Cycle, Mitotic |
| R-HSA-73857 | RNA Polymerase II Transcription |
| R-HSA-74160 | Gene expression (Transcription) |
| R-HSA-8957322 | Metabolism of steroids |
| R-HSA-8986944 | Transcriptional Regulation by MECP2 |
| R-HSA-9012999 | RHO GTPase cycle |
| R-HSA-9716542 | Signaling by Rho GTPases, Miro GTPases and RHOBTB3 |
MSigDB gene sets: 737 (showing top):
GOBP_MYELOID_CELL_DIFFERENTIATION, MORF_DNMT1, MODULE_97, HORIUCHI_WTAP_TARGETS_DN, MODULE_151, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_CH_CH_GROUP_OF_DONORS, MATTIOLI_MGUS_VS_PCL, MORF_RRM1, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, IVANOVA_HEMATOPOIESIS_MATURE_CELL, THEILGAARD_NEUTROPHIL_AT_SKIN_WOUND_DN, MODULE_182, MITSIADES_RESPONSE_TO_APLIDIN_DN, GOBP_MYELOID_LEUKOCYTE_DIFFERENTIATION
GO Biological Process (8): cholesterol biosynthetic process (GO:0006695), neutrophil differentiation (GO:0030223), random inactivation of X chromosome (GO:0060816), lipid metabolic process (GO:0006629), steroid biosynthetic process (GO:0006694), steroid metabolic process (GO:0008202), cholesterol metabolic process (GO:0008203), sterol biosynthetic process (GO:0016126)
GO Molecular Function (10): DNA binding (GO:0003677), RNA binding (GO:0003723), lamin binding (GO:0005521), Delta14-sterol reductase activity (GO:0050613), chromo shadow domain binding (GO:0070087), NADPH binding (GO:0070402), chromatin-protein adaptor activity (GO:0140463), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor (GO:0016628)
GO Cellular Component (11): fibrillar center (GO:0001650), nucleus (GO:0005634), nuclear envelope (GO:0005635), nuclear inner membrane (GO:0005637), nuclear lamina (GO:0005652), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), endoplasmic reticulum membrane (GO:0005789), membrane (GO:0016020), nuclear membrane (GO:0031965), endoplasmic reticulum (GO:0005783)
Reactome top-level categories
Rollup of top-10 pathways:
| Category | Pathways |
|---|---|
| RHO GTPase cycle | 8 |
| Nuclear Envelope (NE) Reassembly | 1 |
| Cholesterol biosynthesis | 1 |
| Transcriptional Regulation by MECP2 | 1 |
| Metabolism of steroids | 1 |
| Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | 1 |
| RNA Polymerase II Transcription | 1 |
| M Phase | 1 |
| Mitotic Anaphase | 1 |
| Metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| sterol metabolic process | 2 |
| nucleic acid binding | 2 |
| intracellular membrane-bounded organelle | 2 |
| nucleus | 2 |
| endomembrane system | 2 |
| nuclear envelope | 2 |
| organelle membrane | 2 |
| cholesterol metabolic process | 1 |
| sterol biosynthetic process | 1 |
| secondary alcohol biosynthetic process | 1 |
| granulocyte differentiation | 1 |
| dosage compensation by inactivation of X chromosome | 1 |
| primary metabolic process | 1 |
| steroid metabolic process | 1 |
| lipid biosynthetic process | 1 |
| lipid metabolic process | 1 |
| secondary alcohol metabolic process | 1 |
| steroid biosynthetic process | 1 |
| protein binding | 1 |
| oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 1 |
| protein domain specific binding | 1 |
| anion binding | 1 |
| NADP binding | 1 |
| chromatin binding | 1 |
| chromatin organization | 1 |
| protein-macromolecule adaptor activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| oxidoreductase activity, acting on the CH-CH group of donors | 1 |
| nucleolus | 1 |
| organelle envelope | 1 |
| organelle inner membrane | 1 |
| nuclear membrane | 1 |
| nuclear periphery | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
2178 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LBR | LMNB1 | P20700 | 998 |
| LBR | LMNB2 | Q03252 | 998 |
| LBR | EMD | P50402 | 944 |
| LBR | CBX3 | Q13185 | 934 |
| LBR | LEMD3 | Q9Y2U8 | 903 |
| LBR | CBX5 | P45973 | 899 |
| LBR | MECP2 | P51608 | 896 |
| LBR | H3-3A | P06351 | 869 |
| LBR | H3C14 | Q71DI3 | 869 |
| LBR | H3-5 | Q6NXT2 | 869 |
| LBR | H3C1 | P02295 | 869 |
| LBR | H3-4 | Q16695 | 869 |
| LBR | H3-7 | Q5TEC6 | 869 |
| LBR | BANF1 | O75531 | 852 |
| LBR | BANF2 | Q9H503 | 821 |
IntAct
213 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| FBL | NOP56 | psi-mi:“MI:0914”(association) | 0.800 |
| LBR | MAD2L1BP | psi-mi:“MI:0914”(association) | 0.730 |
| MAD2L1BP | LBR | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| MAD2L1 | INSR | psi-mi:“MI:0914”(association) | 0.700 |
| YWHAG | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.640 |
| RSRP1 | PSME3 | psi-mi:“MI:0914”(association) | 0.640 |
| NEUROG3 | GXYLT2 | psi-mi:“MI:0914”(association) | 0.640 |
| DDX3X | psi-mi:“MI:0914”(association) | 0.630 | |
| CBX3 | LBR | psi-mi:“MI:0915”(physical association) | 0.620 |
| LBR | CBX3 | psi-mi:“MI:0407”(direct interaction) | 0.620 |
| LBR | CBX5 | psi-mi:“MI:0915”(physical association) | 0.610 |
| CBX5 | LBR | psi-mi:“MI:0915”(physical association) | 0.610 |
| LBR | CBX5 | psi-mi:“MI:0914”(association) | 0.610 |
| YWHAH | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.610 |
| CANX | PGRMC1 | psi-mi:“MI:0914”(association) | 0.570 |
| YWHAH | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.570 |
| CD81 | LBR | psi-mi:“MI:0915”(physical association) | 0.560 |
| LBR | C1QBP | psi-mi:“MI:0915”(physical association) | 0.560 |
| LBR | ZNF579 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RPL28 | MAGEB2 | psi-mi:“MI:0914”(association) | 0.560 |
| RPS6 | IPO7 | psi-mi:“MI:0914”(association) | 0.530 |
| BHLHA15 | RPLP0 | psi-mi:“MI:0914”(association) | 0.530 |
| YWHAZ | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| CLEC3A | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| MAD2L1BP | KIF20A | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (398): LBR (Affinity Capture-MS), LBR (Affinity Capture-MS), LBR (Affinity Capture-MS), LBR (Affinity Capture-MS), LBR (Affinity Capture-MS), LBR (Biochemical Activity), LBR (Proximity Label-MS), LBR (Proximity Label-MS), LBR (Proximity Label-MS), LBR (Proximity Label-MS), LBR (Proximity Label-MS), LBR (Affinity Capture-MS), LBR (Affinity Capture-MS), LBR (Affinity Capture-MS), LBR (Two-hybrid)
ESM2 similar proteins: A0A078H868, A0AAS4, A0JP80, A6X919, D4AD75, O70536, O77760, O77761, P23913, P35610, P53439, P56079, Q14739, Q20696, Q20735, Q28677, Q2PZI1, Q4JM44, Q4R763, Q5R7H4, Q5RK27, Q60457, Q61263, Q63632, Q63633, Q657W3, Q6AX73, Q6Z0E2, Q7T3T4, Q7TSX5, Q86VZ5, Q8IWX5, Q8NHU3, Q8VCQ6, Q91V14, Q924N4, Q965Q4, Q9D4B1, Q9FJB4, Q9H2X9
Diamond homologs: A0A1D8PIC7, G4SW86, I1RF79, I1RR90, I1RZZ3, O08984, O13597, O76062, O88455, P23913, P25340, P32462, P36209, P38670, P78575, Q01447, Q09195, Q14739, Q3U9G9, Q4WJ59, Q4WJJ9, Q4WKA5, Q4WW43, Q54PP1, Q5E9J5, Q5R7H4, Q5UQI4, Q6P4M0, Q71KT5, Q7SXF1, Q7ZXH1, Q8WMV1, Q9LDR4, Q9LDU6, Q9UBM7, Q9Z2Z8, A0A1D8PJ25, Q8MLV1
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CDK1 | down-regulates | LBR | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 232 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 6 | 25.8× | 3e-05 |
| Activation of BAD and translocation to mitochondria | 5 | 24.4× | 3e-04 |
| SARS-CoV-1 targets host intracellular signalling and regulatory pathways | 5 | 21.5× | 3e-04 |
| Activation of BH3-only proteins | 5 | 15.9× | 7e-04 |
| RHO GTPases activate PKNs | 6 | 12.2× | 5e-04 |
| Signaling by high-kinase activity BRAF mutants | 6 | 12.2× | 5e-04 |
| DAP12 signaling | 5 | 11.8× | 2e-03 |
| Intrinsic Pathway for Apoptosis | 6 | 11.3× | 7e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
486 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 21 |
| Likely pathogenic | 4 |
| Uncertain significance | 239 |
| Likely benign | 114 |
| Benign | 36 |
Top pathogenic / likely-pathogenic (25)
| Variant ID | HGVS | Classification |
|---|---|---|
| 100901 | NM_002296.4(LBR):c.1748G>A (p.Arg583Gln) | Pathogenic |
| 100902 | NM_002296.4(LBR):c.32_35del (p.Val11fs) | Pathogenic |
| 100903 | NM_002296.4(LBR):c.1402del (p.Tyr468fs) | Pathogenic |
| 1339424 | NM_002296.4(LBR):c.366+1G>T | Pathogenic |
| 1339425 | NM_002296.4(LBR):c.1379A>G (p.Asp460Gly) | Pathogenic |
| 1390897 | NM_002296.4(LBR):c.1741_1742del (p.Val581fs) | Pathogenic |
| 1441841 | NM_002296.4(LBR):c.403dup (p.Glu135fs) | Pathogenic |
| 2078992 | NM_002296.4(LBR):c.638dup (p.Gly214fs) | Pathogenic |
| 2106050 | NM_002296.4(LBR):c.1A>G (p.Met1Val) | Pathogenic |
| 2151919 | NM_002296.4(LBR):c.43C>T (p.Arg15Ter) | Pathogenic |
| 224876 | NM_002296.4(LBR):c.226C>T (p.Arg76Ter) | Pathogenic |
| 2424393 | NC_000001.10:g.(?225591005)(225605902_?)del | Pathogenic |
| 419545 | NM_002296.4(LBR):c.1748G>T (p.Arg583Leu) | Pathogenic |
| 4538625 | NM_002296.4(LBR):c.48G>A (p.Trp16Ter) | Pathogenic |
| 4803593 | NM_002296.4(LBR):c.265C>T (p.Arg89Ter) | Pathogenic |
| 545625 | NM_002296.4(LBR):c.651_653delinsTGATGAGAAA (p.Ile218fs) | Pathogenic |
| 9527 | NM_002296.4(LBR):c.1565-10_1565-5del | Pathogenic |
| 9528 | NM_002296.4(LBR):c.166-2A>G | Pathogenic |
| 9529 | NM_002296.4(LBR):c.1599_1605delinsCTAGAAG (p.Leu534_Leu535delinsTer) | Pathogenic |
| 9531 | NM_002296.4(LBR):c.1484-9A>G | Pathogenic |
| 9532 | NM_002296.4(LBR):c.1706C>G (p.Pro569Arg) | Pathogenic |
| 1676661 | NM_002296.4(LBR):c.235C>T (p.Arg79Ter) | Likely pathogenic |
| 2635414 | NM_002296.4(LBR):c.1430_1433del (p.Ser477fs) | Likely pathogenic |
| 446676 | NM_002296.4(LBR):c.1174G>A (p.Gly392Arg) | Likely pathogenic |
| 4721476 | NM_002296.4(LBR):c.1483+2T>A | Likely pathogenic |
SpliceAI
2429 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:225404621:CTT:C | donor_loss | 1.0000 |
| 1:225404622:TTA:T | donor_loss | 1.0000 |
| 1:225404623:TA:T | donor_loss | 1.0000 |
| 1:225404624:AC:A | donor_loss | 1.0000 |
| 1:225404624:ACGTG:A | donor_gain | 1.0000 |
| 1:225404625:CG:C | donor_gain | 1.0000 |
| 1:225404625:CGT:C | donor_gain | 1.0000 |
| 1:225404625:CGTG:C | donor_gain | 1.0000 |
| 1:225404625:CGTGC:C | donor_gain | 1.0000 |
| 1:225404702:ACAAA:A | acceptor_gain | 1.0000 |
| 1:225404703:CAAA:C | acceptor_gain | 1.0000 |
| 1:225404703:CAAAC:C | acceptor_gain | 1.0000 |
| 1:225404704:AAA:A | acceptor_gain | 1.0000 |
| 1:225404705:AA:A | acceptor_gain | 1.0000 |
| 1:225404706:ACTG:A | acceptor_loss | 1.0000 |
| 1:225404707:C:CC | acceptor_gain | 1.0000 |
| 1:225404707:CT:C | acceptor_loss | 1.0000 |
| 1:225406662:A:AC | donor_gain | 1.0000 |
| 1:225406663:C:CC | donor_gain | 1.0000 |
| 1:225406663:CGTTT:C | donor_gain | 1.0000 |
| 1:225406830:TTCC:T | acceptor_loss | 1.0000 |
| 1:225406831:TCCT:T | acceptor_loss | 1.0000 |
| 1:225406834:T:A | acceptor_loss | 1.0000 |
| 1:225415290:A:AC | donor_gain | 1.0000 |
| 1:225415291:C:CC | donor_gain | 1.0000 |
| 1:225420839:C:CT | donor_gain | 1.0000 |
| 1:225420840:T:TT | donor_gain | 1.0000 |
| 1:225422073:GTACC:G | donor_loss | 1.0000 |
| 1:225422074:TACCA:T | donor_loss | 1.0000 |
| 1:225422075:ACCAG:A | donor_loss | 1.0000 |
AlphaMissense
4012 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:225404655:C:G | R512P | 0.998 |
| 1:225424030:A:G | W16R | 0.998 |
| 1:225424030:A:T | W16R | 0.998 |
| 1:225404458:G:C | H545D | 0.997 |
| 1:225404666:T:A | K508N | 0.997 |
| 1:225404666:T:G | K508N | 0.997 |
| 1:225424028:C:A | W16C | 0.997 |
| 1:225424028:C:G | W16C | 0.997 |
| 1:225424035:C:T | G14D | 0.997 |
| 1:225403354:C:A | W599C | 0.996 |
| 1:225403354:C:G | W599C | 0.996 |
| 1:225403403:C:G | R583P | 0.996 |
| 1:225404473:A:G | W540R | 0.996 |
| 1:225404473:A:T | W540R | 0.996 |
| 1:225404667:T:A | K508I | 0.996 |
| 1:225424032:C:G | R15P | 0.996 |
| 1:225403356:A:G | W599R | 0.995 |
| 1:225403356:A:T | W599R | 0.995 |
| 1:225423930:A:G | L49S | 0.995 |
| 1:225424036:C:G | G14R | 0.995 |
| 1:225404419:A:G | W558R | 0.994 |
| 1:225404419:A:T | W558R | 0.994 |
| 1:225404471:C:A | W540C | 0.994 |
| 1:225404471:C:G | W540C | 0.994 |
| 1:225423936:A:G | L47P | 0.994 |
| 1:225403347:A:C | Y602D | 0.993 |
| 1:225404490:A:G | L534P | 0.993 |
| 1:225404667:T:G | K508T | 0.993 |
| 1:225404442:C:T | G550D | 0.992 |
| 1:225404668:T:C | K508E | 0.992 |
dbSNP variants (sampled 300 via entrez): RS1000066037 (1:225402902 G>A), RS1000283577 (1:225424834 T>G), RS1000310152 (1:225419165 G>A), RS1000428178 (1:225403537 A>G), RS1000488930 (1:225421542 G>A,T), RS1000760964 (1:225413481 C>T), RS1000785818 (1:225418871 T>A,C), RS1000848155 (1:225409521 T>C), RS1000904810 (1:225427129 G>C), RS1001051592 (1:225415436 C>A,T), RS1001060733 (1:225421841 G>A,T), RS1001063994 (1:225401081 A>G), RS1001261503 (1:225428986 T>C), RS1001311354 (1:225402908 T>A), RS1001574571 (1:225403206 T>A,C)
Disease associations
OMIM: gene MIM:600024 | disease phenotypes: MIM:169400, MIM:215140, MIM:613471, MIM:618019, MIM:208500
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Greenberg dysplasia | Definitive | Autosomal recessive |
| Pelger-Huet anomaly | Strong | Autosomal dominant |
| regressive spondylometaphyseal dysplasia | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Greenberg dysplasia | Moderate | AR |
| regressive spondylometaphyseal dysplasia | Moderate | AR |
Mondo (6): Pelger-Huet anomaly (MONDO:0008214), Greenberg dysplasia (MONDO:0008974), Reynolds syndrome (MONDO:0013276), regressive spondylometaphyseal dysplasia (MONDO:0018663), connective tissue disorder (MONDO:0003900), Jeune syndrome (MONDO:0018770)
Orphanet (4): Greenberg dysplasia (Orphanet:1426), Regressive spondylometaphyseal dysplasia (Orphanet:448267), Reynolds syndrome (Orphanet:779), Jeune syndrome (Orphanet:474)
HPO phenotypes
199 total (30 of 199 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000164 | Abnormality of the dentition |
| HP:0000212 | Gingival overgrowth |
| HP:0000214 | Lip telangiectasia |
| HP:0000217 | Xerostomia |
| HP:0000256 | Macrocephaly |
| HP:0000278 | Retrognathia |
| HP:0000316 | Hypertelorism |
| HP:0000327 | Hypoplasia of the maxilla |
| HP:0000336 | Prominent supraorbital ridges |
| HP:0000347 | Micrognathia |
| HP:0000348 | High forehead |
| HP:0000369 | Low-set ears |
| HP:0000403 | Recurrent otitis media |
| HP:0000457 | Depressed nasal ridge |
| HP:0000476 | Cystic hygroma |
| HP:0000486 | Strabismus |
| HP:0000773 | Short ribs |
| HP:0000774 | Narrow chest |
| HP:0000782 | Abnormal scapula morphology |
| HP:0000878 | 11 pairs of ribs |
| HP:0000888 | Horizontal ribs |
| HP:0000890 | Long clavicles |
| HP:0000926 | Platyspondyly |
| HP:0000952 | Jaundice |
| HP:0000964 | Eczematoid dermatitis |
| HP:0000988 | Skin rash |
| HP:0000989 | Pruritus |
| HP:0001004 | Lymphedema |
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005851_25 | Delirium | 4.000000e-06 |
| GCST011741_10 | LDL cholesterol levels in HIV infection | 2.000000e-06 |
| GCST011741_74 | LDL cholesterol levels in HIV infection | 2.000000e-06 |
| GCST90002392_254 | Mean corpuscular volume | 2.000000e-12 |
| GCST90002397_752 | Mean spheric corpuscular volume | 5.000000e-10 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004611 | low density lipoprotein cholesterol measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D003240 | Connective Tissue Diseases | C17.300 |
| D010381 | Pelger-Huet Anomaly | C15.378.553.696; C16.320.784 |
| C535858 | HEM dysplasia (supp.) | |
| C537571 | Jeune syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067271 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
4 potent at pChembl≥5 of 4 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.09 | Kd | 81.59 | nM | CHEMBL5653589 |
| 7.09 | ED50 | 81.59 | nM | CHEMBL5653589 |
| 5.24 | Kd | 5781 | nM | CHEMBL3752910 |
| 5.24 | ED50 | 5781 | nM | CHEMBL3752910 |
PubChem BioAssay actives
2 with measured affinity, of 4 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148642: Binding affinity to human LBR incubated for 45 mins by Kinobead based pull down assay | kd | 0.0816 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148642: Binding affinity to human LBR incubated for 45 mins by Kinobead based pull down assay | kd | 5.7809 | uM |
CTD chemical–gene interactions
60 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | increases methylation, decreases methylation, increases expression, affects cotreatment | 3 |
| methacrylaldehyde | affects cotreatment, increases expression, increases abundance | 2 |
| Resveratrol | affects cotreatment, increases expression | 2 |
| Acrolein | affects cotreatment, increases expression, increases abundance | 2 |
| Air Pollutants | decreases expression, affects cotreatment, increases abundance, increases expression | 2 |
| Benzo(a)pyrene | affects methylation, decreases expression, increases methylation | 2 |
| Cadmium | decreases reaction, increases abundance, increases palmitoylation, decreases expression | 2 |
| Dexamethasone | increases expression, affects cotreatment | 2 |
| Hydrogen Peroxide | affects expression, decreases expression | 2 |
| Ozone | increases expression, increases abundance, affects cotreatment | 2 |
| Tobacco Smoke Pollution | decreases expression, increases expression | 2 |
| Cadmium Chloride | decreases reaction, increases abundance, increases palmitoylation, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| bisphenol F | affects cotreatment, increases expression | 1 |
| alpha-pinene | affects cotreatment, increases expression, increases abundance | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| 2-bromopalmitate | decreases reaction, increases abundance, increases palmitoylation | 1 |
| imidazopyrazole | increases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| obeticholic acid | decreases expression | 1 |
| gypenoside | decreases expression | 1 |
| abrine | decreases expression | 1 |
| LDN 193189 | affects cotreatment, increases expression | 1 |
| picoxystrobin | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Leflunomide | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651684 | Binding | Binding affinity to human LBR incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
2 cell lines: 1 transformed cell line, 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B3A3 | Abcam HEK293T LBR KO | Transformed cell line | Female |
| CVCL_E2AZ | HAP1 LBR (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
86 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01042158 | PHASE4 | COMPLETED | A Clinical Trial of Ambrisentan and Tadalafil in Pulmonary Arterial Hypertension Associated With Systemic Sclerosis |
| NCT03688191 | PHASE4 | UNKNOWN | Study of Sirolimus in CTD-TP in China |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04197050 | PHASE4 | UNKNOWN | Effect of Sacubitril/Valsartan on Reduced Right Ventricular Ejection Fraction in Patients With CTD |
| NCT04928586 | PHASE4 | UNKNOWN | Immunosuppressant Combined With Pirfenidone in CTD-ILD |
| NCT05440240 | PHASE4 | RECRUITING | Percutaneous Needle Fasciotomy +/- Corticosteroid Injection for Dupuytren’s Contracture |
| NCT05505409 | PHASE4 | UNKNOWN | Efficacy and Safety of Pirfenidone in CTD-ILD |
| NCT06499233 | PHASE4 | RECRUITING | Efficacy and Safety of Prophylactic Treatment for Pneumocystis Jirovecii Pneumonia in Patients With Autoimmune Inflammatory Rheumatic Disease |
| NCT00864201 | PHASE3 | UNKNOWN | A Study to Evaluate the Use of Bosentan in Patients With Exercise Induced Pulmonary Arterial Hypertension Associated With Connective Tissue Disease |
| NCT01196091 | PHASE3 | COMPLETED | A Study of LY2127399 in Participants With Systemic Lupus Erythematosus |
| NCT01205438 | PHASE3 | COMPLETED | A Study of LY2127399 in Participants With Systemic Lupus Erythematosus |
| NCT01488708 | PHASE3 | TERMINATED | On Open-Label Study in Participants With Systemic Lupus Erythematosus |
| NCT03626688 | PHASE3 | COMPLETED | A Study Evaluating the Efficacy and Safety of Ralinepag to Improve Treatment Outcomes in PAH Patients |
| NCT03683186 | PHASE3 | ENROLLING_BY_INVITATION | A Study Evaluating the Long-Term Efficacy and Safety of Ralinepag in Subjects With PAH Via an Open-Label Extension |
| NCT04084678 | PHASE3 | TERMINATED | A Study of Ralinepag to Evaluate Effects on Exercise Capacity by CPET in Subjects With WHO Group 1 PH |
| NCT06716606 | PHASE3 | RECRUITING | A Study to Investigate the Long-term Safety and Efficacy of Belimumab in Adults With Interstitial Lung Disease (ILD) Associated With Systemic Sclerosis (SSc) and Other Connective Tissue Diseases (CTD) (BLISSconneCTD-OLE) |
| NCT06917690 | PHASE3 | RECRUITING | A Study to Learn About the Safety and Efficacy of the Drug Oleogel-S10 in Japanese Patients With Epidermolysis Bullosa |
| NCT00004357 | PHASE2 | COMPLETED | Absorption of Corticosteroids in Children With Juvenile Dermatomyositis |
| NCT00005675 | PHASE2 | COMPLETED | Oral Type I Collagen for Relieving Scleroderma |
| NCT01808196 | PHASE2 | COMPLETED | Testing Effectiveness of Losartan in Patients With EoE With or Without a CTD |
| NCT02682511 | PHASE2 | ACTIVE_NOT_RECRUITING | Oral Ifetroban to Treat Diffuse Cutaneous Systemic Sclerosis (SSc) or SSc-associated Pulmonary Arterial Hypertension |
| NCT04993885 | PHASE2 | RECRUITING | Avatrombopag in the Treatment of Adult Immune Thrombocytopenia With Autoantibodies |
| NCT05516758 | PHASE2 | TERMINATED | A Study of Peresolimab (LY3462817) in Participants With Moderately-to-Severely Active Rheumatoid Arthritis |
| NCT05998759 | PHASE2 | RECRUITING | Telitacicept for the Treatment of Connective Tissue Disease-associated Thrombocytopenia |
| NCT06104228 | PHASE2 | RECRUITING | 129 Xenon MRI as a Biomarker for Diagnosis and Response to Therapy in Pulmonary Arterial Hypertension (PAH) |
| NCT01093911 | PHASE1 | COMPLETED | Safety Study of CDP7657 in Healthy Volunteers and Patients With Systemic Lupus Erythematosus (SLE) |
| NCT01764594 | PHASE1 | COMPLETED | Safety Study of CDP7657 in Patients With Systemic Lupus Erythematosus |
| NCT02392130 | PHASE1 | COMPLETED | A Clinical Trial to Assess the Potential of LEO 130852A Gel to Reduce Steroid Induced Skin Atrophy on Healthy Skin |
| NCT03337165 | PHASE1 | COMPLETED | Autologous Tolerogenic Dendritic Cells for Treatment of Patients With Rheumatoid Arthritis |
| NCT03929120 | PHASE1 | COMPLETED | Allogeneic Bone Marrow Mesenchymal Stem Cells for Patients With Interstitial Lung Disease (ILD) & Connective Tissue Disorders (CTD) |
| NCT01424033 | PHASE2/PHASE3 | TERMINATED | A Clinical Trial for CTD-ILD Treatment |
| NCT04915482 | PHASE2/PHASE3 | UNKNOWN | TPO-RAs Combined With Anti-CD20 Antibody in the Treatment of Adult Immune Thrombocytopenia With Autoantibodies |
| NCT06574581 | PHASE1/PHASE2 | RECRUITING | ADSCs Therapy in Patients With CTD-ILD |
| NCT00001330 | Not specified | COMPLETED | Study of Silicone-Associated Connective Tissue Diseases |
| NCT00001641 | Not specified | COMPLETED | Study of Heritable Connective Tissue Disorders |
| NCT00001978 | Not specified | TERMINATED | Determination of Kidney Function |
| NCT00076830 | Not specified | COMPLETED | Evaluation and Treatment of Patients With Connective Tissue Disease |
| NCT00341679 | Not specified | COMPLETED | Studies of the Natural History and Pathogenesis of Autoimmune/Connective Tissue Diseases |
| NCT00470327 | Not specified | RECRUITING | A Study of the Natural Progression of Interstitial Lung Disease (ILD) |
| NCT00491309 | Not specified | UNKNOWN | Exercise and Respiratory Therapy in Patients With Rheumatoid Arthritis / Collagenosis and Pulmonary Hypertension |
Related Atlas pages
- Associated diseases: Pelger-Huet anomaly, Greenberg dysplasia, regressive spondylometaphyseal dysplasia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): connective tissue disorder, delirium, Greenberg dysplasia, Jeune syndrome, Pelger-Huet anomaly, regressive spondylometaphyseal dysplasia, Reynolds syndrome