LCIIAR

Summary

LCIIAR (lung cancer immune cell infiltration associated lncRNA, HGNC:56346) is a long non-coding RNA gene on chromosome 15q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56346
Approved symbol	LCIIAR
Name	lung cancer immune cell infiltration associated lncRNA
Location	15q13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256802
Ensembl biotype	lncRNA
Entrez	100130111
RNAcentral	URS0000A764D6 — lncRNA, 2580 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000536835, ENST00000560994, ENST00000691334, ENST00000841149, ENST00000841150, ENST00000841151, ENST00000841152, ENST00000841153, ENST00000841154, ENST00000841155, ENST00000841156, ENST00000841157, ENST00000841158, ENST00000841159, ENST00000841160, ENST00000841161, ENST00000841162

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000536835 — 2 exons

Exon	Start	End
ENSE00004265209	29677176	29679168
ENSE00004265227	29674802	29675526

Expression profiles

Bgee: expression breadth ubiquitous, 143 present calls, max score 80.90.

Top tissues by expression

231 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
body of pancreas	UBERON:0001150	80.90	gold quality
pancreas	UBERON:0001264	76.45	gold quality
right uterine tube	UBERON:0001302	74.35	gold quality
right lobe of liver	UBERON:0001114	71.66	gold quality
islet of Langerhans	UBERON:0000006	70.69	gold quality
stromal cell of endometrium	CL:0002255	69.52	gold quality
mucosa of transverse colon	UBERON:0004991	69.25	gold quality
small intestine Peyer’s patch	UBERON:0003454	67.48	gold quality
ganglionic eminence	UBERON:0004023	67.33	gold quality
small intestine	UBERON:0002108	67.18	gold quality
adult mammalian kidney	UBERON:0000082	66.44	gold quality
ventricular zone	UBERON:0003053	65.75	gold quality
duodenum	UBERON:0002114	65.68	gold quality
anterior cingulate cortex	UBERON:0009835	64.55	gold quality
calcaneal tendon	UBERON:0003701	64.33	gold quality
transverse colon	UBERON:0001157	63.26	gold quality
rectum	UBERON:0001052	62.83	gold quality
body of stomach	UBERON:0001161	62.72	gold quality
liver	UBERON:0002107	62.66	gold quality
prefrontal cortex	UBERON:0000451	62.29	gold quality
right frontal lobe	UBERON:0002810	62.19	gold quality
stomach	UBERON:0000945	61.62	gold quality
cortical plate	UBERON:0005343	61.43	gold quality
cortex of kidney	UBERON:0001225	60.97	gold quality
Brodmann (1909) area 9	UBERON:0013540	60.79	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	60.62	gold quality
metanephros cortex	UBERON:0010533	59.77	gold quality
intestine	UBERON:0000160	59.59	gold quality
kidney	UBERON:0002113	59.45	gold quality
fundus of stomach	UBERON:0001160	59.38	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.07

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.