LCMT1-AS1

Summary

LCMT1-AS1 (LCMT1 antisense RNA 1, HGNC:51177) is a long non-coding RNA gene on chromosome 16p12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51177
Approved symbol	LCMT1-AS1
Name	LCMT1 antisense RNA 1
Location	16p12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260448
Ensembl biotype	lncRNA
Entrez	102723510
RNAcentral	URS000075AB44 — lncRNA, 573 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000563176, ENST00000563962, ENST00000566507, ENST00000569920, ENST00000771514

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000563176 — 3 exons

Exon	Start	End
ENSE00002620737	25100476	25100685
ENSE00002625628	25103351	25103641
ENSE00004134617	25111396	25111576

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 78.29.

FANTOM5 (CAGE): breadth broad, TPM avg 0.5690 / max 36.3330, expressed in 297 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
156805	0.4539	209
156804	0.1151	34

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.29	gold quality
gastrocnemius	UBERON:0001388	76.94	gold quality
muscle of leg	UBERON:0001383	76.59	gold quality
ventricular zone	UBERON:0003053	75.46	gold quality
skeletal muscle tissue	UBERON:0001134	74.71	gold quality
heart left ventricle	UBERON:0002084	74.47	gold quality
apex of heart	UBERON:0002098	74.09	gold quality
left testis	UBERON:0004533	73.09	gold quality
right testis	UBERON:0004534	72.91	gold quality
testis	UBERON:0000473	72.90	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.87	gold quality
heart	UBERON:0000948	72.01	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	71.77	gold quality
right atrium auricular region	UBERON:0006631	71.65	gold quality
corpus callosum	UBERON:0002336	71.64	gold quality
cortical plate	UBERON:0005343	71.31	gold quality
substantia nigra	UBERON:0002038	71.05	gold quality
islet of Langerhans	UBERON:0000006	70.91	gold quality
hindlimb stylopod muscle	UBERON:0004252	70.74	gold quality
prefrontal cortex	UBERON:0000451	70.09	gold quality
temporal lobe	UBERON:0001871	68.68	gold quality
amygdala	UBERON:0001876	68.60	gold quality
frontal cortex	UBERON:0001870	68.09	gold quality
sural nerve	UBERON:0015488	68.05	gold quality
Ammon’s horn	UBERON:0001954	67.70	gold quality
putamen	UBERON:0001874	67.66	gold quality
hypothalamus	UBERON:0001898	67.63	gold quality
bone marrow cell	CL:0002092	67.61	silver quality
cerebral cortex	UBERON:0000956	67.54	gold quality
stromal cell of endometrium	CL:0002255	67.47	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.17

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.