LECT2
gene geneOn this page
Also known as chm-IIchm2
Summary
LECT2 (leukocyte cell derived chemotaxin 2, HGNC:6550) is a protein-coding gene on chromosome 5q31.1, encoding Leukocyte cell-derived chemotaxin-2 (O14960). Has a neutrophil chemotactic activity.
This gene encodes a secreted, 16 kDa protein that acts as a chemotactic factor to neutrophils and stimulates the growth of chondrocytes and osteoblasts. This protein has high sequence similarity to the chondromodulin repeat regions of the chicken myb-induced myeloid 1 protein. A polymorphism in this gene may be associated with rheumatoid arthritis.
Source: NCBI Gene 3950 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 20 total
- MANE Select transcript:
NM_002302
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6550 |
| Approved symbol | LECT2 |
| Name | leukocyte cell derived chemotaxin 2 |
| Location | 5q31.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | chm-II, chm2 |
| Ensembl gene | ENSG00000145826 |
| Ensembl biotype | protein_coding |
| OMIM | 602882 |
| Entrez | 3950 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 4 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000274507, ENST00000471827, ENST00000512872, ENST00000514447, ENST00000522943
RefSeq mRNA: 1 — MANE Select: NM_002302
NM_002302
CCDS: CCDS4190
Canonical transcript exons
ENST00000274507 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000972531 | 135952871 | 135952967 |
| ENSE00001044316 | 135954788 | 135954983 |
| ENSE00001124654 | 135946904 | 135947497 |
| ENSE00003472464 | 135951223 | 135951368 |
Expression profiles
Bgee: expression breadth ubiquitous, 156 present calls, max score 98.35.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3041 / max 139.7830, expressed in 7 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 63564 | 0.1687 | 7 |
| 63567 | 0.0522 | 7 |
| 63565 | 0.0321 | 6 |
| 63566 | 0.0272 | 6 |
| 203698 | 0.0240 | 6 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 98.35 | gold quality |
| liver | UBERON:0002107 | 95.99 | gold quality |
| right lobe of liver | UBERON:0001114 | 95.26 | gold quality |
| sperm | CL:0000019 | 82.63 | silver quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 81.46 | gold quality |
| male germ cell | CL:0000015 | 80.56 | silver quality |
| right testis | UBERON:0004534 | 76.58 | gold quality |
| left testis | UBERON:0004533 | 76.26 | gold quality |
| testis | UBERON:0000473 | 74.77 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 71.33 | gold quality |
| adrenal tissue | UBERON:0018303 | 69.64 | gold quality |
| olfactory bulb | UBERON:0002264 | 64.69 | gold quality |
| metanephros cortex | UBERON:0010533 | 63.32 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 60.27 | gold quality |
| mucosa of stomach | UBERON:0001199 | 58.79 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 57.17 | gold quality |
| right adrenal gland | UBERON:0001233 | 56.65 | gold quality |
| endothelial cell | CL:0000115 | 55.24 | gold quality |
| cortex of kidney | UBERON:0001225 | 55.06 | gold quality |
| metanephros | UBERON:0000081 | 54.29 | gold quality |
| prostate gland | UBERON:0002367 | 53.71 | gold quality |
| apex of heart | UBERON:0002098 | 53.35 | gold quality |
| nucleus accumbens | UBERON:0001882 | 53.21 | gold quality |
| adrenal cortex | UBERON:0001235 | 52.92 | gold quality |
| caudate nucleus | UBERON:0001873 | 52.82 | gold quality |
| left adrenal gland | UBERON:0001234 | 52.58 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 52.45 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 52.42 | gold quality |
| adrenal gland | UBERON:0002369 | 52.22 | gold quality |
| putamen | UBERON:0001874 | 52.12 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 2.93 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CTNNB1, FOXN1, MBD2
miRNA regulators (miRDB)
26 targeting LECT2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-6759-5P | 99.99 | 66.54 | 785 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-4698 | 99.84 | 71.41 | 4303 |
| HSA-MIR-2052 | 99.79 | 69.37 | 2031 |
| HSA-MIR-586 | 99.65 | 70.40 | 2051 |
| HSA-MIR-578 | 99.46 | 68.36 | 1787 |
| HSA-MIR-4251 | 99.40 | 69.19 | 3363 |
| HSA-MIR-542-3P | 99.34 | 67.58 | 1270 |
| HSA-MIR-4504 | 99.10 | 69.14 | 1328 |
| HSA-MIR-10B-3P | 99.04 | 66.98 | 988 |
| HSA-MIR-7151-3P | 99.04 | 69.72 | 2370 |
| HSA-MIR-4424 | 98.91 | 70.33 | 1145 |
| HSA-MIR-4709-3P | 98.88 | 68.04 | 1594 |
| HSA-MIR-4635 | 98.74 | 67.63 | 1339 |
| HSA-MIR-96-3P | 97.47 | 68.03 | 839 |
| HSA-MIR-7161-3P | 96.79 | 68.79 | 798 |
| HSA-MIR-1225-5P | 96.76 | 66.85 | 417 |
| HSA-MIR-6857-3P | 96.70 | 65.43 | 915 |
| HSA-MIR-1236-5P | 96.62 | 66.38 | 856 |
| HSA-MIR-4256 | 96.22 | 67.70 | 669 |
| HSA-MIR-759 | 96.16 | 66.77 | 873 |
| HSA-MIR-11181-5P | 96.12 | 67.46 | 665 |
Literature-anchored findings (GeneRIF, showing 40)
- LECT2, which encodes a protein with chemotactic properties for human neutrophils, is a direct target gene of Wnt/beta-catenin signaling in the liver. (PMID:15239100)
- LECT2 participates in liver regeneration and injury following hepatectomy. (PMID:15561248)
- Serum LECT2 levels may be a prognostic indicator of recovery from liver failure. (PMID:15561249)
- LECT2-associated renal amyloidosis represents a unique and perhaps not uncommon disease, especially in Mexican Americans. (PMID:20951486)
- Re-expression of LECT2 significantly reduced the migration and invasion of human hepatocellular carcinoma cells in vitro and significantly reduced their growth in vivo. (PMID:21394108)
- preliminary X-ray analysis of human leukocyte cell-derived chemotaxin 2 (LECT2). (PMID:23519812)
- These findings reveal a novel, specific inhibitory function of LECT2 in hepatocellular carcinoma by the direct binding and inactivation of MET. (PMID:24114941)
- The study indicates that serum LECT2 levels are increased by obesity and fatty liver, and suggests that LECT2 is a novel obesity-related protein. (PMID:24390366)
- ALect2 is a common cause of hepatic amyloidosis in the population of the United States, and subtyping hepatic amyloid deposits by an accurate analytic method such as MS is required for optimal clinical management of hepatic amyloidosis patients (PMID:24415538)
- Amyloidosis derived from leukocyte chemotactic factor 2 (ALECT2) is a recently described disease. Here, we report the characteristics and outcome of 72 patients with renal ALECT2, which included 19 who had another kidney disease on biopsy. (PMID:24451324)
- These results demonstrate the involvement of LECT2 in glucose metabolism and suggest that LECT2 may be a therapeutic target for obesity-associated insulin resistance. (PMID:24478397)
- There were no mutations detected in the LECT2 gene, although all renal leukocyte chemotactic factor 2 amyloidosis patients tested were homozygous for the G nucleotide in a non-synonymous SNP at position 172. (PMID:24522497)
- The data from this study show that weak LECT2 staining should be regarded as indeterminate or a negative result and does not per se allow diagnosis of specific amyloid type. The diagnosis of LECT2 renal amyloidosis may require LMD/MS confirmation. (PMID:24792621)
- LECT2 is regulated by beta-catenin in HCC in both mice and men, but serum LECT2 reflects beta-catenin activity only in mice. Serum LECT2 could be a potential biomarker of HCC in patients. (PMID:24892551)
- First Nations people from British Columbia who presented with chronic kidney disease, were found to be due to LECT2 amyloidosis. (PMID:25064673)
- LECT2 immunostain is useful in confirming subtype of amyloid within the liver in ALECT2.. (PMID:25602789)
- Localized LECT2 amyloidosis of the adrenal gland with coexisting MGUS: a diagnostic challenge. (PMID:26048244)
- ALECT2, which was initially thought to affect mainly Hispanics in the United States, appears to represent an important and likely underrecognized etiology of chronic kidney disease among Egyptians and probably in other ethnic groups around the world (PMID:26867784)
- LECT2 amyloidosis is prevalent among Hispanic decedents in New Mexico. (PMID:26912093)
- LECT2 was found to be catalytically inactive as a metalloendopeptidase against various types of peptide sequences, including pentaglycine. (PMID:27334921)
- findings indicated that serum LECT2 level is negatively associated with the presence of diabetic retinopathy and suggest that low circulating LECT2 level is a risk factor for diabetic retinopathy (PMID:27816666)
- the tissue levels of THBS2 and LECT-2 may correlate with the stage of atherosclerosis. (PMID:28039493)
- VFA was the strongest predictor of plasma LECT2 that is a potential biomarker linking visceral obesity to dyslipidemia (PMID:28278265)
- Circulating LECT2 concentrations were increased in individuals with NAFLD and those with MetS, but not in those with atherosclerosis. The relationship between LECT2 and both NAFLD and MetS might be mediated by its association with abdominal obesity and lipid metabolism. (PMID:28376109)
- Overexpression of LECT2 or treatment with a recombinant LECT2 protein impaired the colony-forming ability and motility of non-small cell lung cancer cells harboring high levels of activated EGFR and MET. (PMID:30453282)
- Data indicate the explicit amyloidogenic core of human leukocyte chemotactic factor 2 (LECT2) and pinpoints regions with distinct amyloidogenic properties. (PMID:31170474)
- This study reports novel findings on the important role of LECT2/Tie1 signaling in pathogenesis of liver fibrosis and the underlying mechanisms. The serum LECT2 level may represent a potential diagnostic marker for liver fibrosis, and more importantly, LECT2 may serve as a potential therapeutic target for liver fibrosis. (PMID:31474362)
- Down-regulation of LECT2 promotes osteogenic differentiation of MSCs via activating Wnt/beta-catenin pathway. (PMID:32763823)
- Plasma half-life and tissue distribution of leukocyte cell-derived chemotaxin 2 in mice. (PMID:32764719)
- Leukocyte cell-derived chemotaxin 2 promotes the development of nonalcoholic fatty liver disease through STAT-1 pathway in mice. (PMID:33555112)
- Loss of bound zinc facilitates amyloid fibril formation of leukocyte-cell-derived chemotaxin 2 (LECT2). (PMID:33617884)
- Plasma Leukocyte Cell-Derived Chemotaxin 2 (LECT2) as a Risk Factor of Coronary Artery Disease: A Cross-Sectional Study. (PMID:34318706)
- Serum leukocyte cell-derived chemotaxin 2 level is associated with atopic dermatitis patients. (PMID:34763463)
- Endoplasmic reticulum stress increases LECT2 expression via ATF4. (PMID:34808500)
- Adipose tissue LECT2 expression is associated with obesity and insulin resistance in Korean women. (PMID:35722819)
- Serum Leukocyte Cell-Derived Chemotaxin 2 (LECT2) Level Is Associated with Osteoporosis. (PMID:35976970)
- Leukocyte cell-derived chemotaxin 2 regulates epithelial-mesenchymal transition and cancer stemness in hepatocellular carcinoma. (PMID:36055405)
- Cryo-EM structure of a human LECT2 amyloid fibril reveals a network of polar ladders at its core. (PMID:37657439)
- Leukocyte cell-derived chemotaxin 2 correlates with pediatric non-alcoholic fatty liver disease. (PMID:37877453)
- Role of LECT2 in exacerbating atopic dermatitis: insight from in vivo and in vitro models via NF-kappaB signaling pathway. (PMID:39206203)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lect2.1 | ENSDARG00000033227 |
| danio_rerio | lect2.3 | ENSDARG00000086483 |
| danio_rerio | lect2.2 | ENSDARG00000090889 |
| mus_musculus | Lect2 | ENSMUSG00000021539 |
| rattus_norvegicus | Lect2 | ENSRNOG00000012189 |
| caenorhabditis_elegans | WBGENE00019407 |
Protein
Protein identifiers
Leukocyte cell-derived chemotaxin-2 — O14960 (reviewed: O14960)
All UniProt accessions (4): D6RD58, D6RGX8, E5RHW6, O14960
UniProt curated annotations — full annotation on UniProt →
Function. Has a neutrophil chemotactic activity. Also a positive regulator of chondrocyte proliferation. Does not show metalloendopeptidase activity.
Subunit / interactions. Interacts with MET.
Subcellular location. Cytoplasm. Secreted.
Tissue specificity. Highly expressed in adult and fetal liver and weakly in testis. Not expressed in bone marrow.
Induction. By phytohemagglutinin (PHA).
Similarity. Belongs to the LECT2/MIM-1 family.
RefSeq proteins (1): NP_002293* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR008663 | LECT2 | Family |
| IPR011055 | Dup_hybrid_motif | Homologous_superfamily |
| IPR016047 | M23ase_b-sheet_dom | Domain |
| IPR017381 | LECT2_chordata | Family |
Pfam: PF01551
UniProt features (22 total): strand 10, binding site 3, disulfide bond 3, helix 2, signal peptide 1, chain 1, sequence variant 1, mutagenesis site 1
Structure
Experimental structures (PDB)
9 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7N2I | ELECTRON CRYSTALLOGRAPHY | 1.4 |
| 5B0H | X-RAY DIFFRACTION | 1.94 |
| 9WL6 | ELECTRON MICROSCOPY | 1.95 |
| 9WL5 | ELECTRON MICROSCOPY | 1.96 |
| 9NON | ELECTRON MICROSCOPY | 2.4 |
| 8G2V | ELECTRON MICROSCOPY | 2.71 |
| 9WL7 | ELECTRON MICROSCOPY | 2.93 |
| 9WL9 | ELECTRON MICROSCOPY | 3.05 |
| 9WL8 | ELECTRON MICROSCOPY | 3.09 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O14960-F1 | 92.82 | 0.85 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (3): 53; 57; 138
Disulfide bonds (3): 25–60, 36–41, 99–142
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 104 | no metalloendopeptidase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 95 (showing top):
GOBP_SKELETAL_SYSTEM_DEVELOPMENT, LEE_LIVER_CANCER_CIPROFIBRATE_DN, MORF_RAD51L3, GOBP_TAXIS, MORF_CTSB, ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_DN, GATA6_01, MORF_IL4, MORF_PRKCA, GNF2_HPX, MODULE_88, PU1_Q6, LEE_LIVER_CANCER_ACOX1_DN, LEE_LIVER_CANCER_E2F1_DN, HNF1_01
GO Biological Process (2): skeletal system development (GO:0001501), chemotaxis (GO:0006935)
GO Molecular Function (3): identical protein binding (GO:0042802), metal ion binding (GO:0046872), protein binding (GO:0005515)
GO Cellular Component (3): obsolete extracellular space (GO:0005615), cytoplasm (GO:0005737), extracellular region (GO:0005576)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| system development | 1 |
| response to chemical | 1 |
| taxis | 1 |
| protein binding | 1 |
| cation binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
720 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LECT2 | CNMD | O75829 | 910 |
| LECT2 | TIE1 | P35590 | 752 |
| LECT2 | CEBPA | P49715 | 530 |
| LECT2 | SELENOP | P49908 | 507 |
| LECT2 | AHSG | P02765 | 503 |
| LECT2 | ANGPTL6 | Q8NI99 | 496 |
| LECT2 | FGL1 | Q08830 | 469 |
| LECT2 | SAA1 | P02735 | 450 |
| LECT2 | FGF21 | Q9NSA1 | 434 |
| LECT2 | SAA1 | P02735 | 428 |
| LECT2 | A0A096LPE2 | A0A096LPE2 | 410 |
| LECT2 | SAA4 | P35542 | 409 |
| LECT2 | TXNDC15 | Q96J42 | 377 |
| LECT2 | GLUL | P15104 | 370 |
| LECT2 | ENHO | Q6UWT2 | 370 |
IntAct
9 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LECT2 | LECT2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| LECT2 | NPM1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| LECT2 | RSL1D1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| LECT2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| LECT2 | ITIH2 | psi-mi:“MI:0914”(association) | 0.350 |
| LECT2 | APOD | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (23): RSL1D1 (Proximity Label-MS), NPM1 (Proximity Label-MS), THUMPD3 (Affinity Capture-MS), GID4 (Affinity Capture-MS), RMND5A (Affinity Capture-MS), WDR26 (Affinity Capture-MS), AKAP11 (Affinity Capture-MS), DICER1 (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), ZMYND19 (Affinity Capture-MS), UBAC1 (Affinity Capture-MS), MKLN1 (Affinity Capture-MS), MAEA (Affinity Capture-MS), RNF123 (Affinity Capture-MS), CSPG4 (Affinity Capture-MS)
ESM2 similar proteins: A0A0W0FPC8, A1CC33, B8N7Z6, C0JAR9, C0JAS1, C0JAS2, C0JAS3, C0JAS4, C0JAU4, C0JAU8, C0JAU9, C0JAX5, D4AUH1, O14960, O62644, O88803, P08940, P45582, P48981, P49676, Q00662, Q10NX8, Q10RB4, Q2FYD8, Q2U1H5, Q2UI81, Q4R1C4, Q4ZD58, Q67VU7, Q6DW73, Q6ZJJ0, Q75HQ3, Q7G3T8, Q875I9, Q8GX69, Q8NK76, Q8W0A1, Q8WPJ2, Q9C6W4, Q9FN08
Diamond homologs: O14960, O62644, O88803, P08940
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
20 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 15 |
| Likely benign | 1 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
374 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:135951366:CTT:C | acceptor_gain | 0.9900 |
| 5:135951374:A:C | acceptor_gain | 0.9900 |
| 5:135952968:C:CC | acceptor_gain | 0.9900 |
| 5:135954781:GACTT:G | donor_loss | 0.9900 |
| 5:135954782:ACTTA:A | donor_loss | 0.9900 |
| 5:135954783:CTTAC:C | donor_loss | 0.9900 |
| 5:135954784:TTAC:T | donor_loss | 0.9900 |
| 5:135954785:TACCG:T | donor_loss | 0.9900 |
| 5:135954786:A:AC | donor_gain | 0.9900 |
| 5:135954786:ACCGG:A | donor_loss | 0.9900 |
| 5:135954787:C:CC | donor_gain | 0.9900 |
| 5:135951209:TC:T | donor_gain | 0.9800 |
| 5:135951210:CC:C | donor_gain | 0.9800 |
| 5:135951217:TCTTA:T | donor_loss | 0.9800 |
| 5:135951218:CTTA:C | donor_loss | 0.9800 |
| 5:135951219:TTAC:T | donor_loss | 0.9800 |
| 5:135951220:TACCT:T | donor_loss | 0.9800 |
| 5:135951221:A:AG | donor_loss | 0.9800 |
| 5:135951222:C:T | donor_loss | 0.9800 |
| 5:135951222:CCT:C | donor_gain | 0.9800 |
| 5:135951374:A:AC | acceptor_gain | 0.9800 |
| 5:135952965:GTGC:G | acceptor_gain | 0.9800 |
| 5:135952966:TGCT:T | acceptor_gain | 0.9800 |
| 5:135952966:TGCTA:T | acceptor_loss | 0.9800 |
| 5:135952967:GCTA:G | acceptor_gain | 0.9800 |
| 5:135952967:GCTAA:G | acceptor_loss | 0.9800 |
| 5:135951367:TT:T | acceptor_gain | 0.9700 |
| 5:135951369:C:CC | acceptor_gain | 0.9700 |
| 5:135952963:CAGTG:C | acceptor_gain | 0.9700 |
| 5:135952964:AGTGC:A | acceptor_gain | 0.9700 |
AlphaMissense
977 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:135951302:G:C | F70L | 0.986 |
| 5:135951302:G:T | F70L | 0.986 |
| 5:135951304:A:G | F70L | 0.986 |
| 5:135951332:G:C | C60W | 0.977 |
| 5:135951240:A:T | V91D | 0.976 |
| 5:135951333:C:G | C60S | 0.973 |
| 5:135951334:A:T | C60S | 0.973 |
| 5:135951303:A:G | F70S | 0.972 |
| 5:135951334:A:G | C60R | 0.971 |
| 5:135951333:C:T | C60Y | 0.970 |
| 5:135952951:C:A | W21C | 0.968 |
| 5:135952951:C:G | W21C | 0.968 |
| 5:135951303:A:C | F70C | 0.966 |
| 5:135947362:C:G | C142S | 0.965 |
| 5:135947363:A:T | C142S | 0.965 |
| 5:135947425:C:T | G121E | 0.963 |
| 5:135951309:G:T | A68E | 0.963 |
| 5:135952940:C:G | C25S | 0.961 |
| 5:135952941:A:T | C25S | 0.961 |
| 5:135951315:A:T | V66E | 0.960 |
| 5:135947371:A:T | I139N | 0.959 |
| 5:135947488:A:T | V100D | 0.959 |
| 5:135947426:C:G | G121R | 0.958 |
| 5:135947426:C:T | G121R | 0.958 |
| 5:135947428:A:T | L120H | 0.956 |
| 5:135951243:C:T | G90D | 0.955 |
| 5:135947377:A:T | V137E | 0.954 |
| 5:135951343:C:G | D57H | 0.952 |
| 5:135947381:G:C | H136D | 0.951 |
| 5:135951342:T:A | D57V | 0.951 |
dbSNP variants (sampled 300 via entrez): RS1000208019 (5:135953801 T>G), RS1000845122 (5:135951721 GAAA>G,GAAAA), RS1001107852 (5:135948319 A>G), RS1001319621 (5:135951094 A>G), RS1001478138 (5:135956846 C>G,T), RS1001884041 (5:135955287 C>T), RS1002380151 (5:135949458 C>G), RS1002481269 (5:135955605 C>T), RS1002757129 (5:135949774 G>A), RS1002803129 (5:135946679 A>G), RS1002860235 (5:135954693 A>G), RS1003060117 (5:135952082 A>G), RS1003190451 (5:135955899 T>C), RS1003396525 (5:135952383 C>G), RS1003783104 (5:135950299 C>T)
Disease associations
OMIM: gene MIM:602882 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006585_2537 | Blood protein levels | 4.000000e-33 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs2107506 | LECT2 | 0.00 | 0 |
CTD chemical–gene interactions
8 total (human), top 8 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| pirinixic acid | affects binding, decreases expression, increases activity | 1 |
| Acetaminophen | decreases expression | 1 |
| Diethylhexyl Phthalate | increases expression | 1 |
| Rotenone | increases expression | 1 |
| Tetrachlorodibenzodioxin | affects expression | 1 |
| Valproic Acid | decreases expression | 1 |
| Cyclosporine | decreases expression | 1 |
| Aflatoxin B1 | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.