LEFTY2
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Also known as LEFTALEFTYA
Summary
LEFTY2 (left-right determination factor 2, HGNC:3122) is a protein-coding gene on chromosome 1q42.12, encoding Left-right determination factor 2 (O00292). Required for left-right (L-R) asymmetry determination of organ systems in mammals.
This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate gene expression. The encoded preproprotein is proteolytically processed to generate the mature protein, which plays a role in left-right asymmetry determination of organ systems during development. The protein may also play a role in endometrial bleeding. Mutations in this gene have been associated with left-right axis malformations, particularly in the heart and lungs. Some types of infertility have been associated with dysregulated expression of this gene in the endometrium. This gene is closely linked to both a related family member and a related pseudogene. This gene encodes multiple isoforms that may undergo similar proteolytic processing.
Source: NCBI Gene 7044 — RefSeq curated summary.
At a glance
- Gene–disease (curated): congenital heart disease (Limited, GenCC) — +1 more curated relationship
- Clinical variants (ClinVar): 204 total
- MANE Select transcript:
NM_003240
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3122 |
| Approved symbol | LEFTY2 |
| Name | left-right determination factor 2 |
| Location | 1q42.12 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | LEFTA, LEFTYA |
| Ensembl gene | ENSG00000143768 |
| Ensembl biotype | protein_coding |
| OMIM | 601877 |
| Entrez | 7044 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 2 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000366820, ENST00000420304, ENST00000474493
RefSeq mRNA: 2 — MANE Select: NM_003240
NM_001172425, NM_003240
CCDS: CCDS1549, CCDS53479
Canonical transcript exons
ENST00000366820 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001899342 | 225940891 | 225941220 |
| ENSE00001956200 | 225936603 | 225937804 |
| ENSE00002390847 | 225939361 | 225939600 |
| ENSE00002394066 | 225939756 | 225940002 |
Expression profiles
Bgee: expression breadth ubiquitous, 170 present calls, max score 94.32.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 2.1259 / max 155.8351, expressed in 152 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 17735 | 2.0869 | 146 |
| 17737 | 0.0301 | 18 |
| 17736 | 0.0088 | 2 |
Top tissues by expression
284 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| decidua | UBERON:0002450 | 94.32 | gold quality |
| body of uterus | UBERON:0009853 | 90.55 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 90.47 | gold quality |
| myometrium | UBERON:0001296 | 89.60 | gold quality |
| sperm | CL:0000019 | 87.46 | gold quality |
| adult organism | UBERON:0007023 | 86.97 | gold quality |
| blood vessel layer | UBERON:0004797 | 86.63 | gold quality |
| left ovary | UBERON:0002119 | 85.63 | gold quality |
| male germ cell | CL:0000015 | 85.17 | gold quality |
| endocervix | UBERON:0000458 | 84.84 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 84.56 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 84.45 | gold quality |
| ascending aorta | UBERON:0001496 | 84.24 | gold quality |
| thoracic aorta | UBERON:0001515 | 84.24 | gold quality |
| right ovary | UBERON:0002118 | 84.03 | gold quality |
| right coronary artery | UBERON:0001625 | 83.30 | gold quality |
| cauda epididymis | UBERON:0004360 | 82.15 | gold quality |
| aorta | UBERON:0000947 | 81.71 | gold quality |
| ovary | UBERON:0000992 | 81.32 | gold quality |
| popliteal artery | UBERON:0002250 | 79.91 | gold quality |
| tibial artery | UBERON:0007610 | 79.90 | gold quality |
| caput epididymis | UBERON:0004358 | 79.40 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 78.33 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 76.45 | gold quality |
| coronary artery | UBERON:0001621 | 75.40 | gold quality |
| left coronary artery | UBERON:0001626 | 75.28 | gold quality |
| uterus | UBERON:0000995 | 75.06 | gold quality |
| adenohypophysis | UBERON:0002196 | 72.70 | gold quality |
| corpus epididymis | UBERON:0004359 | 72.54 | gold quality |
| hair follicle | UBERON:0002073 | 71.27 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9388 | yes | 11436.36 |
| E-MTAB-3929 | yes | 241.46 |
| E-MTAB-10287 | yes | 61.11 |
| E-MTAB-6108 | no | 603.09 |
| E-MTAB-8060 | no | 45.91 |
| E-ANND-3 | no | 1.67 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): DLX5, EOMES, FOXH1, FOXO1, GATA6, HLX, HSF1, ID2, PITX2, POU5F1, TBX18, TBXT, ZFP42
miRNA regulators (miRDB)
60 targeting LEFTY2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-10401-5P | 99.99 | 65.79 | 948 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-302A-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302B-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302C-3P | 99.89 | 71.20 | 1778 |
| HSA-MIR-302D-3P | 99.89 | 71.25 | 1777 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-373-3P | 99.84 | 70.68 | 1668 |
| HSA-MIR-520E-3P | 99.84 | 70.55 | 1698 |
| HSA-MIR-372-3P | 99.83 | 70.58 | 1691 |
| HSA-MIR-520A-3P | 99.83 | 70.59 | 1687 |
| HSA-MIR-520B-3P | 99.83 | 70.56 | 1699 |
| HSA-MIR-520C-3P | 99.83 | 70.56 | 1699 |
| HSA-MIR-520D-3P | 99.83 | 70.78 | 1676 |
| HSA-MIR-4639-5P | 99.81 | 67.37 | 1028 |
| HSA-MIR-4659A-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4659B-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-6739-5P | 99.80 | 67.87 | 2806 |
| HSA-MIR-6733-5P | 99.74 | 67.94 | 2759 |
| HSA-MIR-494-3P | 99.70 | 71.45 | 2795 |
| HSA-MIR-5093 | 99.67 | 69.26 | 2291 |
| HSA-MIR-3685 | 99.62 | 68.83 | 1621 |
| HSA-MIR-4310 | 99.59 | 68.84 | 2527 |
Literature-anchored findings (GeneRIF, showing 17)
- may provide a crucial signal for endometrial breakdown and bleeding by triggering expression of several matrix metalloproteinases (PMID:12215426)
- nodal and the inhibitors of Nodal signaling, lefty-A and lefty-B, are down-regulated very early upon differentiation of human embryonic stem cells (PMID:15308665)
- Addition of recombinant LEFTY-A to explants induced MMP-9 in most samples, a response prevented by ovarian steroids. (PMID:15536155)
- LEFTY proteins, which are known to play a major role during mouse gastrulation, are transiently expressed during human embryonic stem cell differentiation. (PMID:17038673)
- Findings suggest that Lefty2 is negatively modulated by miR-302s in hESCs, which plays an important role in maintaining the balance between pluripotency and germ layer specification. (PMID:21266536)
- Findings show that during embryonic development, EBAF/LEFTY B plays important roles in decidualization and embryo implantation. (PMID:21401636)
- Lefty A may account for the tumor suppressive activity of human adult stem cells. (PMID:22469982)
- LeftyA leads to disruption of Rac1 and Pak1 activity with subsequent actin depolymerization, cell softening and cell shrinkage. (PMID:27404958)
- LEFTY2 down-regulates MKi67 expression and FAK activity, up-regulates miR-200a and E-cadherin, and is thus a powerful negative regulator of endometrial cell proliferation and migration. (PMID:27497669)
- LEFTY2 regulates the expression and activity of ENaC in endometrial epithelial cells via SGK1. (PMID:27606670)
- functional role of LEFTY during progesterone therapy for endometrial carcinoma (PMID:29268772)
- In a reaction-diffusion pattern, the effective range of Nodal is 3.5 times narrower than that of Lefty2. (PMID:30575724)
- The present study demonstrates a novel role of LEFTY2 in up-regulating transcript levels and protein abundance of the Na+ coupled glucose transporter SGLT1, thus stimulating cellular glucose uptake and cellular formation of glycogen in endometrial cancer cells. (PMID:32236143)
- LEFTY2 alleviates hepatic stellate cell activation and liver fibrosis by regulating the TGF-beta1/Smad3 pathway. (PMID:32745796)
- Requirements of LEFTY and Nodal overexpression for tumor cell survival under hypoxia in glioblastoma. (PMID:33111989)
- Association of maternal hypertension and diabetes with variants of the NKX2-5, LEFTY1 and LEFTY2 genes in children with congenital heart defects: a case-control study from Pakistani Population. (PMID:37097539)
- findings show that the TGFB4 (ebaf) mRNA has distinct tumor specific expression (PMID:9230066)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lft1 | ENSDARG00000019920 |
| danio_rerio | lft2 | ENSDARG00000044059 |
| mus_musculus | Lefty1 | ENSMUSG00000038793 |
| mus_musculus | Lefty2 | ENSMUSG00000066652 |
| rattus_norvegicus | Lefty1 | ENSRNOG00000003263 |
| rattus_norvegicus | Lefty2 | ENSRNOG00000060325 |
Paralogs (31): TGFB2 (ENSG00000092969), BMP7 (ENSG00000101144), TGFB1 (ENSG00000105329), BMP5 (ENSG00000112175), BMP8B (ENSG00000116985), TGFB3 (ENSG00000119699), INHBA (ENSG00000122641), INHA (ENSG00000123999), BMP4 (ENSG00000125378), BMP2 (ENSG00000125845), GDF5 (ENSG00000125965), GDF1 (ENSG00000130283), BMP15 (ENSG00000130385), GDF15 (ENSG00000130513), GDF11 (ENSG00000135414), MSTN (ENSG00000138379), INHBE (ENSG00000139269), GDF7 (ENSG00000143869), BMP3 (ENSG00000152785), BMP6 (ENSG00000153162), GDF6 (ENSG00000156466), NODAL (ENSG00000156574), INHBB (ENSG00000163083), BMP10 (ENSG00000163217), GDF9 (ENSG00000164404), INHBC (ENSG00000175189), BMP8A (ENSG00000183682), GDF3 (ENSG00000184344), LEFTY1 (ENSG00000243709), GDF2 (ENSG00000263761), GDF10 (ENSG00000266524)
Protein
Protein identifiers
Left-right determination factor 2 — O00292 (reviewed: O00292)
Alternative names: Endometrial bleeding-associated factor, Left-right determination factor A, Protein lefty-2, Protein lefty-A, Transforming growth factor beta-4
All UniProt accessions (1): O00292
UniProt curated annotations — full annotation on UniProt →
Function. Required for left-right (L-R) asymmetry determination of organ systems in mammals. May play a role in endometrial bleeding.
Subcellular location. Secreted.
Tissue specificity. Mesenchymal cells of the endometrial stroma.
Post-translational modifications. The processing of the protein may also occur at the second R-X-X-R site located at AA 132-135. Processing appears to be regulated in a cell-type specific manner.
Disease relevance. Left-right axis malformations (LRAM) [MIM:601877] The defect includes left pulmonary isomerism, with cardiac anomalies characterized by complete atrioventricular canal defect and hypoplastic left ventricle, and interrupted inferior vena cava. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the TGF-beta family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O00292-1 | 1 | yes |
| O00292-2 | 2 |
RefSeq proteins (2): NP_001165896, NP_003231* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001111 | TGF-b_propeptide | Domain |
| IPR001839 | TGF-b_C | Domain |
| IPR003942 | LRDF | Family |
| IPR015615 | TGF-beta-like | Family |
| IPR017948 | TGFb_CS | Conserved_site |
| IPR029034 | Cystine-knot_cytokine | Homologous_superfamily |
Pfam: PF00019, PF00688
UniProt features (14 total): disulfide bond 4, sequence variant 3, sequence conflict 2, signal peptide 1, propeptide 1, chain 1, glycosylation site 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O00292-F1 | 79.01 | 0.23 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (4): 251–264, 263–316, 293–351, 297–353
Glycosylation sites (1): 158
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-114608 | Platelet degranulation |
| R-HSA-1181150 | Signaling by NODAL |
| R-HSA-1433617 | Regulation of signaling by NODAL |
| R-HSA-109582 | Hemostasis |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-76002 | Platelet activation, signaling and aggregation |
| R-HSA-76005 | Response to elevated platelet cytosolic Ca2+ |
MSigDB gene sets: 112 (showing top):
GOBP_AXIS_SPECIFICATION, GOCC_SECRETORY_GRANULE, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, GOMF_GROWTH_FACTOR_ACTIVITY, GOBP_ANTERIOR_POSTERIOR_PATTERN_SPECIFICATION, GOBP_RESPONSE_TO_BMP, GOBP_RESPONSE_TO_GROWTH_FACTOR, BENPORATH_NOS_TARGETS, GOMF_CYTOKINE_ACTIVITY, GOBP_ANTERIOR_POSTERIOR_AXIS_SPECIFICATION, CERVERA_SDHB_TARGETS_1_UP, GOMF_SIGNALING_RECEPTOR_BINDING, TESAR_ALK_TARGETS_HUMAN_ES_4D_DN, GOCC_PLATELET_ALPHA_GRANULE, GOCC_SECRETORY_VESICLE
GO Biological Process (2): anterior/posterior axis specification (GO:0009948), BMP signaling pathway (GO:0030509)
GO Molecular Function (3): cytokine activity (GO:0005125), transforming growth factor beta receptor binding (GO:0005160), growth factor activity (GO:0008083)
GO Cellular Component (4): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), extracellular matrix (GO:0031012), platelet alpha granule lumen (GO:0031093)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Response to elevated platelet cytosolic Ca2+ | 1 |
| Developmental Biology | 1 |
| Signaling by NODAL | 1 |
| Hemostasis | 1 |
| Platelet activation, signaling and aggregation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| receptor ligand activity | 2 |
| axis specification | 1 |
| anterior/posterior pattern specification | 1 |
| cellular response to BMP stimulus | 1 |
| transforming growth factor beta receptor superfamily signaling pathway | 1 |
| cytokine receptor binding | 1 |
| cellular anatomical structure | 1 |
| external encapsulating structure | 1 |
| platelet alpha granule | 1 |
| secretory granule lumen | 1 |
Protein interactions and networks
STRING
1076 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LEFTY2 | ZIC3 | O60481 | 920 |
| LEFTY2 | PITX2 | Q99697 | 920 |
| LEFTY2 | ACVR2B | Q13705 | 896 |
| LEFTY2 | CRIPTO | P13385 | 885 |
| LEFTY2 | CFC1 | P0CG37 | 873 |
| LEFTY2 | NODAL | Q96S42 | 868 |
| LEFTY2 | FOXH1 | O75593 | 760 |
| LEFTY2 | NANOG | Q9H9S0 | 729 |
| LEFTY2 | POU5F1 | P31359 | 713 |
| LEFTY2 | CER1 | O95813 | 709 |
| LEFTY2 | GJA1 | P17302 | 708 |
| LEFTY2 | SOX2 | P48431 | 698 |
| LEFTY2 | FOXA2 | Q9Y261 | 693 |
| LEFTY2 | GDF1 | P27539 | 686 |
| LEFTY2 | RTTN | Q86VV8 | 637 |
IntAct
6 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LEFTY1 | LEFTY2 | psi-mi:“MI:0914”(association) | 0.530 |
| MAPK8IP2 | LEFTY2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| LEFTY2 | ACSS3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RPL28 | LEFTY2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (5): LEFTY2 (Two-hybrid), LEFTY2 (Affinity Capture-MS), LEFTY2 (Affinity Capture-MS), LEFTY2 (Two-hybrid), LEFTY2 (Two-hybrid)
ESM2 similar proteins: D3YZZ2, E7ERA6, F2Z333, H3BV60, O00292, O18796, O43508, O43612, O54907, O55232, O55241, O60391, O75462, O75610, O77668, O95633, O95685, P13224, P41155, P56717, Q02833, Q06643, Q14626, Q1LZB9, Q2TBM7, Q4V892, Q5RF19, Q5TM22, Q6IA17, Q6UXT9, Q6ZMM2, Q862Z7, Q86VR8, Q86YD3, Q8BQB4, Q8NBV8, Q8TAD2, Q99640, Q99MF4, Q9BZR6
Diamond homologs: O00292, O75610, P57785, Q64280, Q66KL4, P25703
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| POU5F1 | “up-regulates quantity by expression” | LEFTY2 | “transcriptional regulation” |
| SOX2/POU5F1 | “up-regulates quantity by expression” | LEFTY2 | “transcriptional regulation” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
204 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 110 |
| Likely benign | 57 |
| Benign | 22 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
640 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:225937803:CT:C | acceptor_gain | 1.0000 |
| 1:225939359:A:AC | donor_gain | 1.0000 |
| 1:225939359:AC:A | donor_gain | 1.0000 |
| 1:225939360:C:CC | donor_gain | 1.0000 |
| 1:225939360:CC:C | donor_gain | 1.0000 |
| 1:225939365:AGTC:A | donor_gain | 1.0000 |
| 1:225939998:CACCT:C | acceptor_gain | 1.0000 |
| 1:225940003:C:CC | acceptor_gain | 1.0000 |
| 1:225937800:GAGCT:G | acceptor_gain | 0.9900 |
| 1:225937802:GCT:G | acceptor_gain | 0.9900 |
| 1:225937803:CTCTG:C | acceptor_gain | 0.9900 |
| 1:225937804:TCT:T | acceptor_gain | 0.9900 |
| 1:225937805:C:CC | acceptor_gain | 0.9900 |
| 1:225939358:TA:T | donor_loss | 0.9900 |
| 1:225939359:ACCCA:A | donor_loss | 0.9900 |
| 1:225939368:C:A | donor_gain | 0.9900 |
| 1:225939482:C:CA | donor_gain | 0.9900 |
| 1:225939584:C:CT | acceptor_gain | 0.9900 |
| 1:225939596:CCAGC:C | acceptor_gain | 0.9900 |
| 1:225939597:CAGCC:C | acceptor_gain | 0.9900 |
| 1:225939599:GCC:G | acceptor_loss | 0.9900 |
| 1:225939601:C:CC | acceptor_gain | 0.9900 |
| 1:225939999:ACCT:A | acceptor_gain | 0.9900 |
| 1:225940000:CCTC:C | acceptor_gain | 0.9900 |
| 1:225940001:CT:C | acceptor_gain | 0.9900 |
| 1:225940003:C:CG | acceptor_loss | 0.9900 |
| 1:225940004:T:A | acceptor_loss | 0.9900 |
| 1:225940484:A:C | acceptor_gain | 0.9900 |
| 1:225940886:CTCAC:C | donor_loss | 0.9900 |
| 1:225940887:TCACC:T | donor_loss | 0.9900 |
AlphaMissense
2350 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:225937595:C:G | C316S | 0.989 |
| 1:225937596:A:T | C316S | 0.989 |
| 1:225939436:A:C | F221C | 0.988 |
| 1:225939573:C:A | W175C | 0.987 |
| 1:225939573:C:G | W175C | 0.987 |
| 1:225937664:C:G | C293S | 0.985 |
| 1:225937665:A:T | C293S | 0.985 |
| 1:225939813:A:T | V147D | 0.985 |
| 1:225939537:C:A | W187C | 0.982 |
| 1:225939537:C:G | W187C | 0.982 |
| 1:225939760:A:G | S165P | 0.982 |
| 1:225937490:C:G | C351S | 0.981 |
| 1:225937491:A:T | C351S | 0.981 |
| 1:225937596:A:G | C316R | 0.981 |
| 1:225939951:A:C | F101C | 0.981 |
| 1:225937484:C:G | C353S | 0.980 |
| 1:225937485:A:T | C353S | 0.980 |
| 1:225937711:C:A | W277C | 0.980 |
| 1:225937711:C:G | W277C | 0.980 |
| 1:225939907:C:G | A116P | 0.979 |
| 1:225937665:A:G | C293R | 0.978 |
| 1:225939900:A:G | L118P | 0.978 |
| 1:225939435:A:C | F221L | 0.976 |
| 1:225939435:A:T | F221L | 0.976 |
| 1:225939437:A:G | F221L | 0.976 |
| 1:225939565:A:G | F178S | 0.976 |
| 1:225937594:A:C | C316W | 0.974 |
| 1:225937652:C:G | C297S | 0.974 |
| 1:225937653:A:T | C297S | 0.974 |
| 1:225937699:C:A | W281C | 0.974 |
dbSNP variants (sampled 300 via entrez): RS1000048782 (1:225936342 C>G), RS1000304635 (1:225939235 A>T), RS1002867972 (1:225942124 C>G,T), RS1002994228 (1:225941730 G>A), RS1003046289 (1:225941425 T>C), RS1003232059 (1:225943058 C>A,G), RS1004368014 (1:225941577 G>A), RS1004442853 (1:225939152 T>C), RS1004664278 (1:225942962 C>A,T), RS1004748414 (1:225942781 C>G), RS1005369769 (1:225936197 A>C,G), RS1005528113 (1:225941094 GCCAGGGGCAGCAC>G), RS1006165826 (1:225940179 C>T), RS1006522859 (1:225940607 C>G,T), RS1007260258 (1:225937237 C>T)
Disease associations
OMIM: gene MIM:601877 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| congenital heart disease | Limited | Autosomal dominant |
| visceral heterotaxy | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| congenital heart disease | Disputed | AD |
Mondo (2): congenital heart disease (MONDO:0005453), visceral heterotaxy (MONDO:0018677)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006330 | Heart Defects, Congenital | C14.240.400; C14.280.400; C16.131.240.400 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
31 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Resveratrol | increases expression, decreases expression, affects cotreatment | 3 |
| bisphenol A | decreases expression, affects methylation | 2 |
| Triclosan | decreases reaction, increases expression, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| VX-agent | increases expression | 1 |
| manganese chloride | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Ethanol | increases expression | 1 |
| Benzo(a)pyrene | increases mutagenesis | 1 |
| Copper | affects cotreatment, increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Estradiol | affects cotreatment, decreases expression | 1 |
| Fluorocarbons | affects cotreatment, increases expression | 1 |
| Fluorouracil | decreases expression | 1 |
| Hydrocarbons, Chlorinated | increases expression, affects cotreatment | 1 |
| Lipopolysaccharides | decreases reaction, increases expression | 1 |
| Manganese | decreases expression | 1 |
| Metals | affects cotreatment, increases expression | 1 |
| Oxygen | increases expression | 1 |
| Pentachlorophenol | affects cotreatment, increases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Polychlorinated Biphenyls | affects cotreatment, increases expression | 1 |
| Progesterone | affects cotreatment, decreases expression | 1 |
| Teratogens | increases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Zearalenone | decreases expression | 1 |
| Cyclosporine | decreases expression | 1 |
| Medroxyprogesterone Acetate | decreases expression | 1 |
| Antirheumatic Agents | increases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00668824 | PHASE4 | UNKNOWN | Improved Diagnosis of Congenital Heart Disease by Magnetic Resonance Imaging Using Vasovist |
| NCT01368705 | PHASE4 | COMPLETED | Nitrogen Balance in Infants After Post Cardiothoracic Surgery |
| NCT01619982 | PHASE4 | COMPLETED | Pre-operative Prophylaxis With Vancomycin and Cefazolin in Pediatric Cardiovascular Surgery Patients |
| NCT02122679 | PHASE4 | WITHDRAWN | Tranexamic Acid Effect on Platelet Aggregation Following Infant Cardiopulmonary Bypass |
| NCT02527811 | PHASE4 | UNKNOWN | Ulinastatin Injection in in Pediatric Patients Undergoing Open Heart Surgery |
| NCT03014700 | PHASE4 | COMPLETED | Fibrinogen Concentrate vs Cryoprecipitate |
| NCT03408340 | PHASE4 | TERMINATED | Paravertebral Nerve Blocks in Neonates |
| NCT03630796 | PHASE4 | UNKNOWN | Effect of Sevoflurane in Postoperative Troponin I Levels in Children Undergoing Congenital Heart Defects Surgery |
| NCT03667703 | PHASE4 | COMPLETED | Stress Ulcer Prophylaxis Versus Placebo in Critically Ill Infants With Congenital Heart Disease |
| NCT04453761 | PHASE4 | UNKNOWN | Thiamine Influenced on Substrate Energy Effectiveness in Indonesian Children Undergoing Cardiopulmonary Bypass |
| NCT06668389 | PHASE4 | RECRUITING | Sodium-Glucose Cotransporter 2 Inhibitors for Repaired Tetralogy of Fallot Patients for Enhancement of Cardio-Pulmonary Status Trial |
| NCT07499154 | PHASE4 | NOT_YET_RECRUITING | Perioperative Lidocaine for Lung Protection in Infants Undergoing Cardiac Surgery |
| NCT00000470 | PHASE3 | COMPLETED | Infant Heart Surgery: Central Nervous System Sequelae of Circulatory Arrest |
| NCT00000494 | PHASE3 | COMPLETED | Management of Patent Ductus in Premature Infants |
| NCT01134302 | PHASE3 | UNKNOWN | Hybrid Versus Norwood Management Strategies in Infants Undergoing Single Ventricle Palliation |
| NCT01607983 | PHASE3 | WITHDRAWN | Effects of Pulmonary Vasodilation Upon VA Coupling in Fontan Patients |
| NCT01662011 | PHASE3 | UNKNOWN | Application of Neurally Adjusted Ventilatory Assist to Children After Congenital Cardiac Surgery |
| NCT02320669 | PHASE3 | COMPLETED | Phase 3 Triiodothyronine Supplementation for Infants After Cardiopulmonary Bypass |
| NCT02615262 | PHASE3 | COMPLETED | Intraoperative Dexamethasone in Pediatric Cardiac Surgery |
| NCT03153137 | PHASE3 | COMPLETED | Clinical Study Assessing the Efficacy and Safety of Macitentan in Fontan-palliated Subjects |
| NCT03154476 | PHASE3 | COMPLETED | Role of Sildenafil for Fontan Associated Liver Disease (SiFALD) Study |
| NCT04536194 | PHASE3 | COMPLETED | Dopamine Versus Norepinephrine Under General Anesthesia |
| NCT04702373 | PHASE3 | ACTIVE_NOT_RECRUITING | Training in Exercise Activities and Motion for Growth (TEAM 4 Growth) RCT |
| NCT05049590 | PHASE3 | COMPLETED | Acute Normovolemic Hemodilution in Complex Cardiac Surgery |
| NCT06406517 | PHASE3 | UNKNOWN | Comparative Effectiveness of Gadopiclenol for Evaluation of Adult Congenital Heart Anatomy and Hemodynamics |
| NCT06693674 | PHASE3 | RECRUITING | Effect of Sacubitril-Valsartan on Cardiac Structure and Function |
| NCT06955260 | PHASE3 | NOT_YET_RECRUITING | SGLT2 Inhibition With Empagliflozin in Fontan Circulatory Failure |
| NCT00115375 | PHASE2 | COMPLETED | Platelet Aggregation Inhibition in Children on Clopidogrel (PICOLO) |
| NCT00350220 | PHASE2 | COMPLETED | Transfusion Strategies in Pediatric Cardiothoracic Surgery |
| NCT00374088 | PHASE2 | COMPLETED | N-Acetylcysteine in Neonatal Congenital Heart Surgery (INACT Study) |
| NCT00538785 | PHASE2 | COMPLETED | A Study to Evaluate MEDI-524 In Children With Hemodynamically Significant Congenital Heart Disease |
| NCT00770705 | PHASE2 | WITHDRAWN | Parenteral Phenoxybenzamine During Congenital Heart Disease Surgery |
| NCT00919945 | PHASE2 | TERMINATED | Impact of Early Enteral Feeding on Splanchnic Blood Flow After Surgery for Critical Heart Disease in the Newborn |
| NCT01063712 | PHASE2 | COMPLETED | Safety and Effectiveness of the Device Nit-Occlud® PDA-R |
| NCT01069510 | PHASE2 | COMPLETED | Spironolactone in Adult Congenital Heart Disease |
| NCT01189981 | PHASE2 | COMPLETED | Effect of eHealth Encouragements to Intensive Exercise in Adolescents With Congenital Heart Disease |
| NCT01330433 | PHASE2 | COMPLETED | Effects of CoSeal on Bleeding & Adhesions in Pediatric Heart Surgery |
| NCT01662037 | PHASE2 | COMPLETED | Bosentan Therapy in Children With Functional Single Ventricle |
| NCT01668264 | PHASE2 | UNKNOWN | Imaging Assessment of Diastolic Function |
| NCT01827059 | PHASE2 | UNKNOWN | Bosentan In Exercise Induced Pulmonary Arterial Hypertension in CongenitaL Heart diseasE |
Related Atlas pages
- Associated diseases: congenital heart disease, visceral heterotaxy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital heart disease, visceral heterotaxy