LEPR
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Also known as OBRCD295LEP-ROB-R
Summary
LEPR (leptin receptor, HGNC:6554) is a protein-coding gene on chromosome 1p31.3, encoding Leptin receptor (P48357). Receptor for hormone LEP/leptin.
The protein encoded by this gene belongs to the gp130 family of cytokine receptors that are known to stimulate gene transcription via activation of cytosolic STAT proteins. This protein is a receptor for leptin (an adipocyte-specific hormone that regulates body weight), and is involved in the regulation of fat metabolism, as well as in a novel hematopoietic pathway that is required for normal lymphopoiesis. Mutations in this gene have been associated with obesity and pituitary dysfunction. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. It is noteworthy that this gene and LEPROT gene (GeneID:54741) share the same promoter and the first 2 exons, however, encode distinct proteins (PMID:9207021).
Source: NCBI Gene 3953 — RefSeq curated summary.
At a glance
- Gene–disease (curated): obesity due to leptin receptor gene deficiency (Strong, GenCC)
- GWAS associations: 77
- Clinical variants (ClinVar): 543 total — 18 pathogenic, 16 likely-pathogenic
- Phenotypes (HPO): 32
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity unscored
- MANE Select transcript:
NM_002303
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6554 |
| Approved symbol | LEPR |
| Name | leptin receptor |
| Location | 1p31.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | OBR, CD295, LEP-R, OB-R |
| Ensembl gene | ENSG00000116678 |
| Ensembl biotype | protein_coding |
| OMIM | 601007 |
| Entrez | 3953 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 6 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000344610, ENST00000349533, ENST00000371058, ENST00000371059, ENST00000371060, ENST00000462765, ENST00000471762, ENST00000616738
RefSeq mRNA: 6 — MANE Select: NM_002303
NM_001003679, NM_001003680, NM_001198687, NM_001198688, NM_001198689, NM_002303
CCDS: CCDS30740, CCDS30741, CCDS55604, CCDS631
Canonical transcript exons
ENST00000349533 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000000357 | 65420668 | 65420740 |
| ENSE00001295071 | 65610214 | 65610296 |
| ENSE00001298588 | 65617964 | 65618146 |
| ENSE00001302126 | 65619928 | 65620023 |
| ENSE00001303665 | 65616008 | 65616224 |
| ENSE00001306788 | 65622906 | 65622981 |
| ENSE00001310674 | 65636191 | 65641559 |
| ENSE00003459486 | 65565546 | 65565605 |
| ENSE00003504765 | 65621353 | 65621458 |
| ENSE00003528068 | 65608753 | 65608901 |
| ENSE00003547600 | 65572326 | 65572449 |
| ENSE00003559375 | 65425303 | 65425378 |
| ENSE00003575758 | 65601392 | 65601682 |
| ENSE00003576938 | 65570473 | 65570802 |
| ENSE00003585777 | 65598660 | 65598804 |
| ENSE00003652322 | 65596448 | 65596593 |
| ENSE00003664750 | 65601843 | 65601960 |
| ENSE00003671220 | 65592657 | 65592865 |
| ENSE00003683686 | 65609947 | 65610106 |
| ENSE00003690482 | 65605038 | 65605237 |
Expression profiles
Bgee: expression breadth ubiquitous, 272 present calls, max score 98.83.
FANTOM5 (CAGE): breadth broad, TPM avg 10.9238 / max 1122.3550, expressed in 725 samples.
FANTOM5 promoters (12 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 3289 | 37.2493 | 1818 |
| 3302 | 7.2785 | 595 |
| 3297 | 1.8867 | 358 |
| 3293 | 0.5272 | 205 |
| 3301 | 0.4727 | 198 |
| 3288 | 0.2603 | 79 |
| 3295 | 0.2458 | 114 |
| 3299 | 0.0800 | 36 |
| 3298 | 0.0471 | 20 |
| 3294 | 0.0462 | 16 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| trabecular bone tissue | UBERON:0002483 | 98.83 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 98.53 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 98.41 | gold quality |
| pericardium | UBERON:0002407 | 97.86 | gold quality |
| skin of hip | UBERON:0001554 | 97.10 | gold quality |
| oral cavity | UBERON:0000167 | 96.76 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 96.52 | gold quality |
| lower lobe of lung | UBERON:0008949 | 96.25 | gold quality |
| upper leg skin | UBERON:0004262 | 95.75 | gold quality |
| urethra | UBERON:0000057 | 95.49 | gold quality |
| calcaneal tendon | UBERON:0003701 | 95.48 | gold quality |
| cardia of stomach | UBERON:0001162 | 94.89 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 94.79 | gold quality |
| mammary duct | UBERON:0001765 | 94.78 | gold quality |
| vena cava | UBERON:0004087 | 94.53 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 94.20 | gold quality |
| liver | UBERON:0002107 | 93.69 | gold quality |
| synovial joint | UBERON:0002217 | 93.20 | gold quality |
| cauda epididymis | UBERON:0004360 | 92.73 | gold quality |
| visceral pleura | UBERON:0002401 | 92.50 | gold quality |
| mammalian vulva | UBERON:0000997 | 92.49 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 92.39 | gold quality |
| body of tongue | UBERON:0011876 | 92.09 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 92.03 | gold quality |
| mammary gland | UBERON:0001911 | 91.97 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 91.82 | gold quality |
| pleura | UBERON:0000977 | 91.17 | gold quality |
| right lobe of liver | UBERON:0001114 | 90.42 | gold quality |
| parietal pleura | UBERON:0002400 | 90.27 | gold quality |
| seminal vesicle | UBERON:0000998 | 90.18 | gold quality |
Single-cell (SCXA)
Detected in 11 experiment(s), a significant marker in 10.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-4 | yes | 1370.94 |
| E-MTAB-5061 | yes | 572.20 |
| E-GEOD-81608 | yes | 492.26 |
| E-GEOD-81547 | yes | 408.38 |
| E-ENAD-27 | yes | 402.20 |
| E-GEOD-83139 | yes | 358.98 |
| E-MTAB-10287 | yes | 65.16 |
| E-CURD-112 | yes | 9.17 |
| E-MTAB-10137 | yes | 4.00 |
| E-GEOD-124858 | no | 184.03 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): HIF1A, KAT5, MT3, PPARG
miRNA regulators (miRDB)
22 targeting LEPR, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-579-3P | 99.86 | 71.66 | 3628 |
| HSA-MIR-664B-3P | 99.84 | 71.65 | 3590 |
| HSA-MIR-3156-3P | 99.76 | 66.72 | 939 |
| HSA-MIR-200A-5P | 99.76 | 69.10 | 949 |
| HSA-MIR-200B-5P | 99.76 | 69.05 | 948 |
| HSA-MIR-4719 | 99.73 | 72.10 | 3329 |
| HSA-MIR-3618 | 99.69 | 68.57 | 1012 |
| HSA-MIR-3147 | 99.52 | 66.34 | 388 |
| HSA-MIR-150-3P | 99.43 | 70.51 | 920 |
| HSA-MIR-372-5P | 99.41 | 69.11 | 2299 |
| HSA-MIR-302A-5P | 99.39 | 68.21 | 1913 |
| HSA-MIR-4652-3P | 99.33 | 70.02 | 2742 |
| HSA-MIR-5197-3P | 98.71 | 67.05 | 1905 |
| HSA-MIR-10226 | 98.25 | 66.50 | 811 |
| HSA-MIR-660-5P | 98.16 | 68.27 | 680 |
| HSA-MIR-4457 | 98.09 | 67.12 | 1274 |
| HSA-MIR-4275 | 97.96 | 68.42 | 1549 |
| HSA-MIR-585-5P | 97.54 | 69.02 | 955 |
| HSA-MIR-5591-3P | 96.23 | 67.03 | 489 |
| HSA-MIR-4522 | 95.76 | 66.23 | 742 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity Not yet evaluated (unscored). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- A human liver cell line expresses the leptin receptor long form Ob-Rb in sufficient quantity to respond to leptin signalling in terms of STAT activation. (PMID:11448122)
- Cultured human articular chondrocytes express functional leptin receptor Ob-R, a receptor present on chondrocytes in native human cartilage. (PMID:11549273)
- Sleep apnea syndrome is associated with plasma soluble leptin receptor and insulin resistance independently of body mass index. (PMID:11896492)
- leptin receptors are expressed in breast cancer; data suggests they may be implicated in mammary cell proliferation and in breast cancer pathogenesis (PMID:11911959)
- the levels of mRNA for the long and total forms of leptin receptors were suppressed in association with the severity of endometriosis (PMID:11994543)
- results suggest that DNA sequence variations in the leptin receptor gene could affect substrate oxidation (PMID:12006639)
- presence of the long leptin receptor isoform in the absorptive cells of the small intestine, suggesting that leptin could have a physiological role in the regulation of nutrient absorption (PMID:12010881)
- confirmation of expression in primary osteoblasts (PMID:12054170)
- relationship of soluble leptin receptor with the degree of adiposity suggests that high SLR levels may enhance leptin action in lean subjects more than in obese subjects (PMID:12075576)
- regulation of circulating levels by gender, adiposity, sex steroids and leptin (PMID:12086939)
- Leptin receptor (Ob-R) expression is induced in peripheral blood mononuclear cells by in vitro activation and in vivo in HIV-infected patients, consistent with the suggested role of leptin in modulating the immune response. (PMID:12100031)
- during weight loss leptin levels decreased, whereas soluble leptin receptor levels and the receptor bound fraction of leptin increased (PMID:12105280)
- modifications in ciruclating levels across the eating disorder spectrum (PMID:12140788)
- Serum leptin and leptin binding activity in children and adolescents with hypothalamic dysfunction. (PMID:12199340)
- cloning, expression and purification of a recombinant leptin-binding domain (PMID:12226096)
- regulated shedding of the ectodomain of membrane-spanning leptin receptors may represent a novel mechanism of modulating leptin’s biological activity (PMID:12270921)
- transforming growth factor beta effects an increase in formation (PMID:12359239)
- high levels of soluble leptin receptor in emaciation may reflect an up-regulation to suppress leptin action during energy deficiency and with free leptin index is a tool to investigate the leptin axis during growth and sexual maturation (PMID:12364439)
- term pregnancy human umbilical cord and fetal membranes co-express leptin and its receptor genes (PMID:12396559)
- Significantly increased in anorexia nervosa patients. Increase unaffected by partial refeeding. Possible etiological role of increased soluble leptin receptor levels in anorexia nervosa by affecting leptin central and/or peripherial effects. (PMID:12489569)
- Human natural killer cell lines express leptin receptors. (PMID:12504075)
- the tumor clones in childhood acute lymphoblastic leukemia do not express the leptin receptor (PMID:12512839)
- higher leptin levels for those with a leptin receptor Lys109Arg or Gln223Arg mutation may imply that these subjects have a modified functional leptin receptor (PMID:12634434)
- Skillful mechanism where a change in the serum SLEPR level regulates, in part, the biological activity of leptin in the circulation. (PMID:12660261)
- in living cells approximately 60% of the leptin receptor exists as constitutive dimers at physiological expression levels in the absence of leptin (PMID:12734179)
- Serum adiponectin and soluble leptin receptor levels might be influenced by common regulatory factors and challenge the notion that cortisol may have a direct inhibitory effect on adiponectin in humans. (PMID:12788897)
- low serum leptin, high serum TGF-beta1 and sOb-R levels, and elevated urine leptin concentrations were observed at the onset of minimal change nephrotic syndrome (PMID:12898374)
- Possibility that soluble leptin receptor is a minor component of leptin binding capacity in the plasma of pregnant women. (PMID:14599116)
- role of the soluble leptin receptor (sOB-R) in maintaining serum leptin levels in nephrotic patients (PMID:14602796)
- Ob-R gene may serve as a novel modifier gene for hypercholesterolemia in Japanese men. (PMID:14625131)
- Hints for a peripheral role of leptin in the male genital tract, possibly, by an interaction between leptin and spermatozoa via sperm leptin receptors. (PMID:14636218)
- Soluble leptin receptor levels are not altered by the cyclic hormone status in the menstrual cycle. (PMID:14967380)
- LEPR single nucleotide polymorphisms contribute to variation in obesity phenotypes. (PMID:14970363)
- The leptin receptor is aberrantly expressed in bladder cancer tissue and is possibly involved in the carcinogenesis of bladder cancer. (PMID:14972512)
- Lower expression levels of leptin receptor short form (Ob-Ra) were observed in most endometrial cancer tissues, especially in the poorly differentiated ones. (PMID:14984939)
- Expression of leptin receptor in arcuate nucleus resulted in normalization of estrous cycle length, increased ovarian follicular development, and decreased serum progesterone levels. (PMID:14998906)
- plasma SLR levels are independently regulated by many different physiological and pathophysiological conditions and SLR may modulate the actions of leptin (PMID:15016839)
- low levels of expression of leptin receptors at the cell surface results from partial retention in the biosynthetic pathway, coupled to constitutive removal from the plasma membrane via ligand-independent, constitutive endocytosis (PMID:15123629)
- Secretory endometrium is target for leptin, and oocytes and preimplantation embryos possess OB-R mRNA. Leptin may be necessary for embryonic development. Leptin mRNA expressed at blastocysts stage. Possible function in blastocyst-endometrial dialogue. (PMID:15126576)
- Leptin receptor polymorphism (Gln223 Arg) has association with peak bone mass in young women. (PMID:15130412)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lepr | ENSDARG00000070961 |
| mus_musculus | Lepr | ENSMUSG00000057722 |
| rattus_norvegicus | Lepr | ENSRNOG00000023664 |
Paralogs (23): CRLF1 (ENSG00000006016), IL12RB2 (ENSG00000081985), IL5RA (ENSG00000091181), IL12RB1 (ENSG00000096996), IL27RA (ENSG00000104998), EBI3 (ENSG00000105246), GHR (ENSG00000112964), PRLR (ENSG00000113494), LIFR (ENSG00000113594), CSF3R (ENSG00000119535), CNTFR (ENSG00000122756), IL13RA2 (ENSG00000123496), IL13RA1 (ENSG00000131724), IL6ST (ENSG00000134352), IL11RA (ENSG00000137070), OSMR (ENSG00000145623), IL2RG (ENSG00000147168), IL6R (ENSG00000160712), IL23R (ENSG00000162594), IL31RA (ENSG00000164509), IL3RA (ENSG00000185291), CSF2RA (ENSG00000198223), CRLF2 (ENSG00000205755)
Protein
Protein identifiers
Leptin receptor — P48357 (reviewed: P48357)
Alternative names: HuB219, OB receptor
All UniProt accessions (1): P48357
UniProt curated annotations — full annotation on UniProt →
Function. Receptor for hormone LEP/leptin. On ligand binding, mediates LEP central and peripheral effects through the activation of different signaling pathways such as JAK2/STAT3 and MAPK cascade/FOS. In the hypothalamus, LEP acts as an appetite-regulating factor that induces a decrease in food intake and an increase in energy consumption by inducing anorexinogenic factors and suppressing orexigenic neuropeptides, also regulates bone mass and secretion of hypothalamo-pituitary-adrenal hormones. In the periphery, increases basal metabolism, influences reproductive function, regulates pancreatic beta-cell function and insulin secretion, is pro-angiogenic and affects innate and adaptive immunity. Control of energy homeostasis and melanocortin production (stimulation of POMC and full repression of AgRP transcription) is mediated by STAT3 signaling, whereas distinct signals regulate NPY and the control of fertility, growth and glucose homeostasis. Involved in the regulation of counter-regulatory response to hypoglycemia by inhibiting neurons of the parabrachial nucleus. Has a specific effect on T lymphocyte responses, differentially regulating the proliferation of naive and memory T -ells. Leptin increases Th1 and suppresses Th2 cytokine production. May transport LEP across the blood-brain barrier. Binds LEP and mediates LEP endocytosis. Does not induce phosphorylation of and activate STAT3. Antagonizes Isoform A and isoform B-mediated LEP binding and endocytosis.
Subunit / interactions. Present as a mixture of monomers and dimers. The phosphorylated receptor binds a number of SH2 domain-containing proteins such as JAK2, STAT3, PTPN11, and SOCS3. Interaction with SOCS3 inhibits JAK/STAT signaling and MAPK cascade.
Subcellular location. Cell membrane. Basolateral cell membrane Secreted.
Tissue specificity. Isoform A is expressed in fetal liver and in hematopoietic tissues and choroid plexus. In adults highest expression in heart, liver, small intestine, prostate and ovary. Low level in lung and kidney. Isoform B is highly expressed in hypothalamus, but also in skeletal muscle. Detected in fundic and antral epithelial cells of the gastric mucosa. Isoform B and isoform A are expressed by NK cells (at protein level).
Post-translational modifications. On ligand binding, phosphorylated on two conserved C-terminal tyrosine residues (isoform B only) by JAK2. Tyr-986 is required for complete binding and activation of PTPN11, ERK/FOS activation,for interaction with SOCS3 and SOCS3 mediated inhibition of leptin signaling. Phosphorylation on Tyr-1141 is required for STAT3 binding/activation. Phosphorylation of Tyr-1079 has a more accessory role.
Disease relevance. Leptin receptor deficiency (LEPRD) [MIM:614963] A rare disease characterized by normal levels of serum leptin, hyperphagia and severe obesity from an early age. Additional features include alterations in immune function, and delayed puberty due to hypogonadotropic hypogonadism. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The cytoplasmic domain may be essential for intracellular signal transduction by activation of JAK tyrosine kinase and STATs. The WSXWS motif appears to be necessary for proper protein folding and thereby efficient intracellular transport and cell-surface receptor binding. The box 1 motif is required for JAK interaction and/or activation.
Similarity. Belongs to the type I cytokine receptor family. Type 2 subfamily.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P48357-1 | B, 13.2, OBRb | yes |
| P48357-2 | A, 6.4, HuB219.3 | |
| P48357-3 | C, 12.1, OBRa | |
| P48357-4 | D, HuB219.2 | |
| P48357-5 | E |
RefSeq proteins (6): NP_001003679, NP_001003680, NP_001185616, NP_001185617, NP_001185618, NP_002294* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003529 | Hematopoietin_rcpt_Gp130_CS | Conserved_site |
| IPR003531 | Hempt_rcpt_S_F1_CS | Conserved_site |
| IPR003961 | FN3_dom | Domain |
| IPR007110 | Ig-like_dom | Domain |
| IPR010457 | IgC2-like_lig-bd | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR036116 | FN3_sf | Homologous_superfamily |
| IPR041182 | LEP-R_IGD | Domain |
Pfam: PF00041, PF06328, PF18589
UniProt features (88 total): glycosylation site 18, strand 15, sequence variant 11, disulfide bond 10, splice variant 7, domain 5, modified residue 4, region of interest 3, mutagenesis site 3, short sequence motif 2, topological domain 2, sequence conflict 2, helix 2, signal peptide 1, chain 1, transmembrane region 1, turn 1
Structure
Experimental structures (PDB)
9 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3V6O | X-RAY DIFFRACTION | 1.95 |
| 6E2P | X-RAY DIFFRACTION | 2.83 |
| 8X85 | ELECTRON MICROSCOPY | 3.58 |
| 7Z3Q | X-RAY DIFFRACTION | 3.62 |
| 8X81 | ELECTRON MICROSCOPY | 3.77 |
| 8X80 | ELECTRON MICROSCOPY | 3.88 |
| 8AVE | ELECTRON MICROSCOPY | 5.62 |
| 8AVF | ELECTRON MICROSCOPY | 6.45 |
| 8AVO | ELECTRON MICROSCOPY | 6.84 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P48357-F1 | 66.49 | 0.22 |
Antibody-complex structures (SAbDab): 1 — 3V6O
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (4): 882, 986, 1079, 1141
Disulfide bonds (10): 37–90, 89–99, 131–142, 186–196, 188–193, 352–412, 413–418, 436–447, 473–528, 488–498
Glycosylation sites (18): 23, 41, 56, 73, 81, 98, 187, 206, 276, 347, 397, 516, 624, 659, 688, 697, 728, 750
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 986 | greatly reduced ptpn11 binding; no ptpn11 phosphorylation; no effect on stat3 phosphorylation. |
| 1078–1079 | no effect on ptpn11 nor stat3 phosphorylation. |
| 1141 | no effect on ptpn11 phosphorylation; no stat3 phosphorylation. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-2586552 | Signaling by Leptin |
MSigDB gene sets: 389 (showing top):
GOBP_REGULATION_OF_AUTOPHAGY, WANG_CLIM2_TARGETS_UP, GOBP_BEHAVIOR, KEGG_ADIPOCYTOKINE_SIGNALING_PATHWAY, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_SKELETAL_SYSTEM_DEVELOPMENT, GOBP_RESPONSE_TO_PEPTIDE, YAO_HOXA10_TARGETS_VIA_PROGESTERONE_UP, MODULE_64, GOZGIT_ESR1_TARGETS_DN, GOBP_GROWTH, GOCC_CELL_SURFACE, GOBP_NEUROGENESIS, GOBP_VESICLE_MEDIATED_TRANSPORT, YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_1
GO Biological Process (27): angiogenesis (GO:0001525), glycogen metabolic process (GO:0005977), gluconeogenesis (GO:0006094), energy reserve metabolic process (GO:0006112), phagocytosis (GO:0006909), cell surface receptor signaling pathway (GO:0007166), multicellular organism development (GO:0007275), cholesterol metabolic process (GO:0008203), positive regulation of cell population proliferation (GO:0008284), negative regulation of autophagy (GO:0010507), glial cell proliferation (GO:0014009), cytokine-mediated signaling pathway (GO:0019221), sexual reproduction (GO:0019953), T cell differentiation (GO:0030217), leptin-mediated signaling pathway (GO:0033210), glucose homeostasis (GO:0042593), response to leptin (GO:0044321), negative regulation of gluconeogenesis (GO:0045721), regulation of bone remodeling (GO:0046850), regulation of transport (GO:0051049), regulation of feeding behavior (GO:0060259), energy homeostasis (GO:0097009), cell surface receptor signaling pathway via STAT (GO:0097696), bone growth (GO:0098868), positive regulation of cold-induced thermogenesis (GO:0120162), transport across blood-brain barrier (GO:0150104), system development (GO:0048731)
GO Molecular Function (8): transmembrane signaling receptor activity (GO:0004888), cytokine receptor activity (GO:0004896), peptide hormone binding (GO:0017046), cytokine binding (GO:0019955), leptin receptor activity (GO:0038021), identical protein binding (GO:0042802), protein binding (GO:0005515), signaling receptor activity (GO:0038023)
GO Cellular Component (6): extracellular region (GO:0005576), external side of plasma membrane (GO:0009897), basolateral plasma membrane (GO:0016323), signaling receptor complex (GO:0043235), plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell population proliferation | 2 |
| cytokine-mediated signaling pathway | 2 |
| protein binding | 2 |
| cellular anatomical structure | 2 |
| blood vessel morphogenesis | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| energy reserve metabolic process | 1 |
| glucan metabolic process | 1 |
| glucose metabolic process | 1 |
| hexose biosynthetic process | 1 |
| energy derivation by oxidation of organic compounds | 1 |
| endocytosis | 1 |
| signal transduction | 1 |
| multicellular organismal process | 1 |
| anatomical structure development | 1 |
| sterol metabolic process | 1 |
| secondary alcohol metabolic process | 1 |
| regulation of cell population proliferation | 1 |
| positive regulation of cellular process | 1 |
| autophagy | 1 |
| negative regulation of catabolic process | 1 |
| regulation of autophagy | 1 |
| gliogenesis | 1 |
| cell surface receptor signaling pathway | 1 |
| cellular response to cytokine stimulus | 1 |
| reproductive process | 1 |
| lymphocyte differentiation | 1 |
| T cell activation | 1 |
| cellular response to leptin stimulus | 1 |
| carbohydrate homeostasis | 1 |
| response to hormone | 1 |
| gluconeogenesis | 1 |
| regulation of gluconeogenesis | 1 |
| negative regulation of biosynthetic process | 1 |
| negative regulation of carbohydrate metabolic process | 1 |
| negative regulation of small molecule metabolic process | 1 |
| regulation of tissue remodeling | 1 |
| bone remodeling | 1 |
| transport | 1 |
| regulation of localization | 1 |
Protein interactions and networks
STRING
2156 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LEPR | LEP | P41159 | 999 |
| LEPR | POMC | P01189 | 917 |
| LEPR | JAK2 | O60674 | 904 |
| LEPR | SOCS3 | O14543 | 897 |
| LEPR | INS | P01308 | 887 |
| LEPR | MC4R | P32245 | 882 |
| LEPR | AGRP | O00253 | 881 |
| LEPR | BBS1 | Q8NFJ9 | 872 |
| LEPR | ADIPOQ | Q15848 | 869 |
| LEPR | NPY | P01303 | 863 |
| LEPR | STAT3 | P40763 | 845 |
| LEPR | LEPROT | O15243 | 844 |
| LEPR | CARTPT | Q16568 | 840 |
| LEPR | SNX4 | O95219 | 791 |
| LEPR | SNX2 | P82862 | 770 |
IntAct
40 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LEPR | LEP | psi-mi:“MI:0407”(direct interaction) | 0.700 |
| LEP | LEPR | psi-mi:“MI:0914”(association) | 0.700 |
| LEPR | LEP | psi-mi:“MI:0915”(physical association) | 0.700 |
| LEP | LEPR | psi-mi:“MI:0915”(physical association) | 0.700 |
| GHSR | LEPR | psi-mi:“MI:0403”(colocalization) | 0.610 |
| GHSR | LEPR | psi-mi:“MI:2364”(proximity) | 0.610 |
| HCRTR1 | LEPR | psi-mi:“MI:0403”(colocalization) | 0.580 |
| HCRTR1 | LEPR | psi-mi:“MI:2364”(proximity) | 0.580 |
| LEPR | HCRTR1 | psi-mi:“MI:0915”(physical association) | 0.580 |
| LEPR | LEPROT | psi-mi:“MI:0915”(physical association) | 0.540 |
| LEPR | LEPROT | psi-mi:“MI:0407”(direct interaction) | 0.540 |
| atp6v0d_human | ATP6AP2 | psi-mi:“MI:0914”(association) | 0.530 |
| SCGB1D1 | FAM234B | psi-mi:“MI:0914”(association) | 0.530 |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| TAFA4 | NRP1 | psi-mi:“MI:0914”(association) | 0.530 |
| PTPN11 | LEPR | psi-mi:“MI:0914”(association) | 0.530 |
| LEPR | GRB2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CSNK2B | LEPR | psi-mi:“MI:0915”(physical association) | 0.370 |
| LEPR | LEPR | psi-mi:“MI:2364”(proximity) | 0.350 |
| LEPR | JAK2 | psi-mi:“MI:0914”(association) | 0.350 |
| BTNL8 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| SLURP1 | MANBA | psi-mi:“MI:0914”(association) | 0.350 |
| DEFB107A | ZZEF1 | psi-mi:“MI:0914”(association) | 0.350 |
| TAFA2 | ERN1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (47): LEPR (Affinity Capture-MS), LEPR (Reconstituted Complex), LEPR (Affinity Capture-MS), LEPR (Affinity Capture-MS), LEPR (Affinity Capture-MS), LEPR (Affinity Capture-MS), LEPR (Affinity Capture-MS), NDN (Two-hybrid), LEPR (Proximity Label-MS), LEPR (Protein-RNA), PTPN11 (Affinity Capture-Western), PTPN11 (Reconstituted Complex), LEPR (Synthetic Lethality), USP8 (Proximity Label-MS), LEPR (Proximity Label-MS)
ESM2 similar proteins: A0A2K5V015, A1YIY0, A8MUZ8, A8MWA4, B8JI71, O08569, P01133, P0DJ43, P14370, P14585, P17630, P19070, P48357, P82279, P97435, Q07444, Q0D2K5, Q28066, Q28660, Q29RU2, Q4KUS1, Q5G872, Q5R6R1, Q5RCW9, Q5T1H1, Q5UKY4, Q5Z5Q3, Q60736, Q63515, Q63722, Q6DFV8, Q6GMZ9, Q6V0K7, Q6ZN79, Q7TSY4, Q811Q4, Q8N2E2, Q8VHS2, Q90Y54, Q95MI4
Diamond homologs: O02671, P16471, P48356, P48357, Q62959, Q9MYL0, Q14213
SIGNOR signaling
12 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| LEPR | “up-regulates activity” | JAK2 | binding |
| LEPR | “up-regulates activity” | STAT3 | phosphorylation |
| JAK2 | “up-regulates activity” | LEPR | phosphorylation |
| LEPR | “up-regulates activity” | STAT3 | binding |
| LEPR | “up-regulates activity” | PTPN11 | binding |
| LEPR | “down-regulates activity” | AMPK | |
| LEP | up-regulates | LEPR | binding |
| LEPR | “up-regulates quantity” | POMC | |
| LEPR | “down-regulates quantity” | NPY | |
| LEPR | “down-regulates quantity” | AGRP | |
| LEPR | “up-regulates activity” | SH2B1 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 35 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| positive regulation of tumor necrosis factor production | 5 | 27.4× | 3e-04 |
Disease & clinical
Cancer significance
Clinical variants and AI predictions
ClinVar
543 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 18 |
| Likely pathogenic | 16 |
| Uncertain significance | 248 |
| Likely benign | 157 |
| Benign | 53 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2498024 | NM_002303.6(LEPR):c.1874G>A (p.Trp625Ter) | Pathogenic |
| 2814341 | NM_002303.6(LEPR):c.253dup (p.Thr85fs) | Pathogenic |
| 3030911 | NM_002303.6(LEPR):c.1986_1990del (p.Leu663fs) | Pathogenic |
| 3247939 | NC_000001.10:g.(?66101854)(66102698_?)del | Pathogenic |
| 3348212 | NM_002303.6(LEPR):c.494+1G>T | Pathogenic |
| 3351586 | NM_002303.6(LEPR):c.1776del (p.Lys592fs) | Pathogenic |
| 3351967 | NM_002303.6(LEPR):c.1103G>A (p.Trp368Ter) | Pathogenic |
| 3653406 | NM_002303.6(LEPR):c.395G>A (p.Trp132Ter) | Pathogenic |
| 421140 | NM_002303.6(LEPR):c.93G>A (p.Trp31Ter) | Pathogenic |
| 453309 | NM_002303.6(LEPR):c.3268_3269dup (p.Ser1090fs) | Pathogenic |
| 4726995 | NM_002303.6(LEPR):c.359_360del (p.Phe120fs) | Pathogenic |
| 4732471 | NM_002303.6(LEPR):c.2396-2A>C | Pathogenic |
| 4811500 | NM_002303.6(LEPR):c.1846del (p.Arg615_Leu616insTer) | Pathogenic |
| 596614 | NM_002303.6(LEPR):c.2296A>T (p.Lys766Ter) | Pathogenic |
| 596629 | NM_002303.6(LEPR):c.479del (p.His160fs) | Pathogenic |
| 619954 | NM_002303.6(LEPR):c.464A>C (p.Tyr155Ser) | Pathogenic |
| 666597 | Single allele | Pathogenic |
| 8522 | NM_002303.6(LEPR):c.2597+1G>A | Pathogenic |
| 1525833 | NM_002303.6(LEPR):c.995-2A>G | Likely pathogenic |
| 3242154 | NM_002303.6(LEPR):c.1752+1G>A | Likely pathogenic |
| 3340175 | NM_002303.6(LEPR):c.2051A>C (p.His684Pro) | Likely pathogenic |
| 3345031 | NM_002303.6(LEPR):c.1501C>T (p.Gln501Ter) | Likely pathogenic |
| 3345338 | NM_002303.6(LEPR):c.1603+1G>T | Likely pathogenic |
| 3347906 | NM_002303.6(LEPR):c.1204C>T (p.Arg402Ter) | Likely pathogenic |
| 3348213 | NM_002303.6(LEPR):c.233del (p.His78fs) | Likely pathogenic |
| 3351054 | NM_002303.6(LEPR):c.1990T>A (p.Trp664Arg) | Likely pathogenic |
| 3353366 | NM_002303.6(LEPR):c.286_289delinsT (p.Asp96_Arg97delinsTer) | Likely pathogenic |
| 3354244 | NM_002303.6(LEPR):c.802C>T (p.Gln268Ter) | Likely pathogenic |
| 3355139 | NM_002303.6(LEPR):c.1265A>T (p.Tyr422Phe) | Likely pathogenic |
| 3357044 | NM_002303.6(LEPR):c.3G>A (p.Met1Ile) | Likely pathogenic |
SpliceAI
5043 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:65425301:A:AG | acceptor_gain | 1.0000 |
| 1:65425302:G:GG | acceptor_gain | 1.0000 |
| 1:65425377:GG:G | donor_gain | 1.0000 |
| 1:65425378:GG:G | donor_gain | 1.0000 |
| 1:65425379:G:GG | donor_gain | 1.0000 |
| 1:65429835:T:A | acceptor_gain | 1.0000 |
| 1:65429835:T:TA | acceptor_gain | 1.0000 |
| 1:65429836:G:A | acceptor_gain | 1.0000 |
| 1:65429846:T:A | acceptor_gain | 1.0000 |
| 1:65429847:G:A | acceptor_gain | 1.0000 |
| 1:65494009:G:GT | donor_gain | 1.0000 |
| 1:65596445:A:AG | acceptor_gain | 1.0000 |
| 1:65596445:AAGT:A | acceptor_gain | 1.0000 |
| 1:65596446:A:AG | acceptor_gain | 1.0000 |
| 1:65596447:G:GA | acceptor_gain | 1.0000 |
| 1:65596447:GT:G | acceptor_gain | 1.0000 |
| 1:65596447:GTGAA:G | acceptor_gain | 1.0000 |
| 1:65596589:GAGAA:G | donor_gain | 1.0000 |
| 1:65596594:G:GG | donor_gain | 1.0000 |
| 1:65597434:GA:G | donor_gain | 1.0000 |
| 1:65598803:AGG:A | donor_loss | 1.0000 |
| 1:65598805:GTAG:G | donor_loss | 1.0000 |
| 1:65617962:A:AG | acceptor_gain | 1.0000 |
| 1:65617963:G:GG | acceptor_gain | 1.0000 |
| 1:65633260:G:T | donor_gain | 1.0000 |
| 1:65420736:TAAAG:T | donor_loss | 0.9900 |
| 1:65420738:AAGGT:A | donor_loss | 0.9900 |
| 1:65420739:AGG:A | donor_loss | 0.9900 |
| 1:65420740:GGTAC:G | donor_loss | 0.9900 |
| 1:65420741:G:GA | donor_loss | 0.9900 |
AlphaMissense
7731 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:65601896:T:C | C447R | 0.996 |
| 1:65601863:T:C | C436R | 0.995 |
| 1:65601896:T:A | C447S | 0.995 |
| 1:65601897:G:C | C447S | 0.995 |
| 1:65608821:T:A | W558R | 0.995 |
| 1:65608821:T:C | W558R | 0.995 |
| 1:65610061:A:C | S623R | 0.995 |
| 1:65610063:T:A | S623R | 0.995 |
| 1:65610063:T:G | S623R | 0.995 |
| 1:65622957:G:C | W883C | 0.995 |
| 1:65622957:G:T | W883C | 0.995 |
| 1:65601499:T:A | W368R | 0.994 |
| 1:65601499:T:C | W368R | 0.994 |
| 1:65601864:G:A | C436Y | 0.994 |
| 1:65622955:T:A | W883R | 0.994 |
| 1:65622955:T:C | W883R | 0.994 |
| 1:65601863:T:A | C436S | 0.993 |
| 1:65601864:G:C | C436S | 0.993 |
| 1:65601897:G:A | C447Y | 0.993 |
| 1:65601898:C:G | C447W | 0.993 |
| 1:65601902:T:A | W449R | 0.993 |
| 1:65601902:T:C | W449R | 0.993 |
| 1:65601904:G:C | W449C | 0.993 |
| 1:65601904:G:T | W449C | 0.993 |
| 1:65605126:T:C | C498R | 0.992 |
| 1:65601865:T:G | C436W | 0.991 |
| 1:65608823:G:C | W558C | 0.991 |
| 1:65608823:G:T | W558C | 0.991 |
| 1:65610070:A:C | S626R | 0.991 |
| 1:65610072:C:A | S626R | 0.991 |
dbSNP variants (sampled 300 via entrez): RS1000001524 (1:65459908 A>G), RS1000008257 (1:65483861 G>T), RS1000033733 (1:65454977 C>G,T), RS1000049408 (1:65498616 T>C), RS1000049870 (1:65550124 C>G,T), RS1000070706 (1:65449783 C>G,T), RS1000080591 (1:65583018 T>C), RS1000098917 (1:65537462 CT>C,CTT), RS1000106906 (1:65609277 C>T), RS1000141524 (1:65449181 C>T), RS1000144644 (1:65544783 T>C), RS1000178187 (1:65438423 G>A,T), RS1000183519 (1:65477297 C>T), RS1000206088 (1:65577290 T>C), RS1000207814 (1:65435681 C>T)
Disease associations
OMIM: gene MIM:601007 | disease phenotypes: MIM:614963, MIM:614962, MIM:601665
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| obesity due to leptin receptor gene deficiency | Strong | Autosomal recessive |
Mondo (7): peripheral precocious puberty (MONDO:0015791), obesity due to leptin receptor gene deficiency (MONDO:0013992), monogenic diabetes (MONDO:0015967), obesity due to congenital leptin deficiency (MONDO:0013991), inherited obesity (MONDO:0019182), obesity disorder (MONDO:0011122), primary ovarian failure (MONDO:0005387)
Orphanet (8): Rare peripheral precocious puberty (Orphanet:178040), Obesity due to leptin receptor gene deficiency (Orphanet:179494), Rare genetic diabetes mellitus (Orphanet:183625), Obesity due to congenital leptin deficiency (Orphanet:66628), Genetic obesity (Orphanet:77828), Obesity due to melanocortin 4 receptor deficiency (Orphanet:71529), NON RARE IN EUROPE: Non rare obesity (Orphanet:521399), NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619)
HPO phenotypes
32 total (30 of 32 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000712 | Emotional lability |
| HP:0000718 | Aggressive behavior |
| HP:0000771 | Gynecomastia |
| HP:0000786 | Primary amenorrhea |
| HP:0000815 | Hypergonadotropic hypogonadism |
| HP:0000819 | Diabetes mellitus |
| HP:0000823 | Delayed puberty |
| HP:0000824 | Decreased response to growth hormone stimulation test |
| HP:0000831 | Insulin-resistant diabetes mellitus |
| HP:0000842 | Hyperinsulinemia |
| HP:0001249 | Intellectual disability |
| HP:0001513 | Obesity |
| HP:0002155 | Hypertriglyceridemia |
| HP:0002591 | Polyphagia |
| HP:0002788 | Recurrent upper respiratory tract infections |
| HP:0002958 | Immune dysregulation |
| HP:0003292 | Decreased serum leptin |
| HP:0003593 | Infantile onset |
| HP:0004322 | Short stature |
| HP:0004926 | Orthostatic hypotension due to autonomic dysfunction |
| HP:0005419 | Decreased T cell activation |
| HP:0005616 | Accelerated skeletal maturation |
| HP:0008187 | Absence of secondary sex characteristics |
| HP:0008214 | Decreased serum estradiol |
| HP:0008245 | Pituitary hypothyroidism |
| HP:0008724 | Hypoplasia of the ovary |
| HP:0008734 | Decreased testicular size |
| HP:0012286 | Abnormal hypothalamus morphology |
| HP:0032218 | Decreased CD4+ T cell proportion |
GWAS associations
77 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000178_2 | C-reactive protein | 7.000000e-21 |
| GCST000292_4 | Metabolic traits | 4.000000e-07 |
| GCST000430_4 | C-reactive protein | 3.000000e-14 |
| GCST000605_1 | Soluble leptin receptor levels | 6.000000e-13 |
| GCST000965_8 | C-reactive protein levels | 4.000000e-62 |
| GCST001650_4 | C-reactive protein | 2.000000e-09 |
| GCST001957_5 | Obesity (early onset extreme) | 2.000000e-09 |
| GCST002086_4 | C-reactive protein | 9.000000e-09 |
| GCST002147_14 | Fibrinogen | 5.000000e-14 |
| GCST002541_27 | Menarche (age at onset) | 4.000000e-08 |
| GCST002610_1 | Fasting plasma glucose (childhood) | 5.000000e-08 |
| GCST002937_15 | Molybdenum levels | 8.000000e-06 |
| GCST003194_12 | Fibrinogen levels | 4.000000e-15 |
| GCST003681_6 | C-reactive protein levels or triglyceride levels (pleiotropy) | 8.000000e-36 |
| GCST003994_11 | Age at voice drop | 1.000000e-10 |
| GCST004121_9 | Fibrinogen levels | 5.000000e-12 |
| GCST004122_31 | Fibrinogen levels | 5.000000e-11 |
| GCST004602_10 | Mean corpuscular volume | 4.000000e-11 |
| GCST004610_27 | White blood cell count | 2.000000e-16 |
| GCST004613_12 | Sum neutrophil eosinophil counts | 9.000000e-20 |
| GCST004614_111 | Granulocyte count | 1.000000e-19 |
| GCST004614_112 | Granulocyte count | 4.000000e-37 |
| GCST004620_111 | Sum basophil neutrophil counts | 8.000000e-20 |
| GCST004626_58 | Myeloid white cell count | 8.000000e-19 |
| GCST004626_59 | Myeloid white cell count | 8.000000e-36 |
| GCST004629_7 | Neutrophil count | 5.000000e-20 |
| GCST004630_7 | Mean corpuscular hemoglobin | 1.000000e-15 |
| GCST004632_88 | Lymphocyte percentage of white cells | 8.000000e-10 |
| GCST006585_480 | Blood protein levels | 0.000000e+00 |
| GCST007614_24 | C-reactive protein levels | 2.000000e-162 |
EFO canonical traits (25, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004458 | C-reactive protein measurement |
| EFO:0004635 | leptin receptor measurement |
| EFO:0004703 | age at menarche |
| EFO:0004530 | triglyceride measurement |
| EFO:0007888 | age at voice drop |
| EFO:0004833 | neutrophil count |
| EFO:0004842 | eosinophil count |
| EFO:0007987 | granulocyte count |
| EFO:0005090 | basophil count |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0007993 | lymphocyte percentage of leukocytes |
| EFO:0004340 | body mass index |
| EFO:0005937 | longitudinal BMI measurement |
| EFO:0004614 | apolipoprotein A 1 measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0009819 | comparative body size at age 10, self-reported |
| EFO:0007991 | eosinophil percentage of leukocytes |
| EFO:0004509 | hemoglobin measurement |
| EFO:0007989 | monocyte percentage of leukocytes |
| EFO:0007990 | neutrophil percentage of leukocytes |
| EFO:0007985 | platelet crit |
| EFO:0004309 | platelet count |
| EFO:0004736 | aspartate aminotransferase measurement |
| EFO:0004533 | alkaline phosphatase measurement |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5913 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
5 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs1137101 | Efficacy | 3 | simvastatin | Coronary Disease |
| rs1137101 | Efficacy | 3 | simvastatin | Hyperlipidemias |
| rs1137101 | Toxicity | 3 | valproic acid | Epilepsy |
| rs1137101 | Toxicity | 3 | antipsychotics | |
| rs1805094 | Efficacy | 3 | atorvastatin | Acute coronary syndrome |
PharmGKB variants
6 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1137101 | LEPR, LEPROT | 3 | 2.50 | 4 | simvastatin;valproic acid;antipsychotics |
| rs1805094 | LEPR, LEPROT | 3 | 1.25 | 1 | atorvastatin |
| rs1045895 | LEPR, LEPROT | 0.00 | 0 | ||
| rs6657868 | LEPR | 0.00 | 0 | ||
| rs9436746 | LEPR | 0.00 | 0 | ||
| rs1805096 | LEPR | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: catalytic receptor — IL-6 receptor family
Most potent curated ligand interactions (1 total), top 1:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| leptin | Agonist | 10.19 | pKd |
CTD chemical–gene interactions
60 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases expression, affects expression | 4 |
| methylmercuric chloride | increases expression, decreases expression | 2 |
| bisphenol A | decreases methylation, increases expression | 2 |
| trichostatin A | decreases expression | 2 |
| methacrylaldehyde | affects cotreatment, increases expression, increases oxidation, increases abundance | 2 |
| Acrolein | affects cotreatment, increases expression, increases oxidation, increases abundance | 2 |
| Arsenic | affects methylation, decreases expression | 2 |
| Benzo(a)pyrene | affects methylation, decreases expression | 2 |
| Ozone | affects cotreatment, increases expression, increases oxidation, increases abundance | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tetrachlorodibenzodioxin | affects expression, increases expression | 2 |
| Simvastatin | affects response to substance | 2 |
| aristolochic acid I | decreases expression | 1 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases expression, increases oxidation, increases abundance | 1 |
| pirinixic acid | increases activity, increases expression, affects binding | 1 |
| lead acetate | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, decreases expression | 1 |
| 1-aminomethylphosphonic acid | decreases expression | 1 |
| pentanal | decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| incobotulinumtoxinA | increases expression | 1 |
ChEMBL screening assays
3 unique, capped per target: 3 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1291112 | Binding | Displacement of [125I]-Leptin from leptin receptor at 1 to 3 uM | Conformationally constrained NR2B selective NMDA receptor antagonists derived from ifenprodil: Synthesis and biological evaluation of tetrahydro-3-benzazepine-1,7-diols. — Bioorg Med Chem |
Cellosaurus cell lines
7 cell lines: 4 cancer cell line, 1 hybrid cell line, 1 transformed cell line, 1 factor-dependent cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_4457 | SN-56/OBR | Hybrid cell line | |
| CVCL_D7TH | Ubigene A-549 LEPR KO | Cancer cell line | Male |
| CVCL_D8P6 | Ubigene HCT 116 LEPR KO | Cancer cell line | Male |
| CVCL_D9II | Ubigene HEK293 LEPR KO | Transformed cell line | Female |
| CVCL_E0GF | Ubigene HeLa LEPR KO | Cancer cell line | Female |
| CVCL_K248 | Baf3/WSX E63x7 sort | Factor-dependent cell line | |
| CVCL_SV45 | HAP1 LEPR (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00076362 | PHASE4 | COMPLETED | Pediatric Hypothalamic Obesity |
| NCT00079547 | PHASE4 | COMPLETED | The Safety and Effectiveness of Low and High Carbohydrate Diets |
| NCT00115063 | PHASE4 | TERMINATED | LOSS- Louisiana Obese Subjects Study |
| NCT00134303 | PHASE4 | COMPLETED | Trial Comparing Metformin Versus Placebo in Non Alcoholic Steatohepatitis (NASH) Patients Receiving Bariatric Surgery for Obesity |
| NCT00143936 | PHASE4 | COMPLETED | The Safety and Efficacy of Low and High Carbohydrate Diets |
| NCT00143962 | PHASE4 | COMPLETED | Comparison of Two Approaches to Weight Loss Follow-Up Study |
| NCT00152360 | PHASE4 | COMPLETED | The Effect of Xenical on Weight and Risk Factors |
| NCT00176306 | PHASE4 | COMPLETED | Levofloxacin Pharmacokinetics (PK) in the Severely Obese |
| NCT00203450 | PHASE4 | COMPLETED | Zonegran for the Treatment of Weight Gain Associated With Psychotropic Medication Use: A Placebo-Controlled Trial |
| NCT00205504 | PHASE4 | COMPLETED | Oral Contraceptives in the Metabolic Syndrome |
| NCT00229229 | PHASE4 | TERMINATED | Comparison of 4 Diets in the Management of Overweight Patients With Vascular Disease |
| NCT00234988 | PHASE4 | COMPLETED | A Phase IV, Multi-Center, Open-Label Trial of Sibutramine in Combination With a Hypocaloric Diet in Obese and Overweight Thai Subjects. |
| NCT00264589 | PHASE4 | COMPLETED | Exercise Training and Cardiovascular Function in Obesity and in Type 2 Diabetes |
| NCT00288873 | PHASE4 | COMPLETED | Characterization of Hyperparathyroidism and Vitamin D Deficiency in Obesity |
| NCT00298857 | PHASE4 | TERMINATED | A Pharmacokinetic Study to Compare the Dosing of Valproic Acid in Subjects With Different Body Weights |
| NCT00315146 | PHASE4 | COMPLETED | Optimizing Body Composition for Function in Older Adults |
| NCT00319202 | PHASE4 | TERMINATED | Clinical Trial to Assess the Effects of Candesartan on the Carbohydrate Metabolism of Obese Subjects |
| NCT00327912 | PHASE4 | UNKNOWN | Laparoscopic Roux-en-Y Gastric Bypass Versus Laparoscopic Biliopancreatic Diversion (BPD)- Duodenal Switch for Superobesity |
| NCT00352287 | PHASE4 | COMPLETED | Study to Determine the Effects of Human Growth Hormone and Pioglitazone in Overweight, Prediabetic Adults |
| NCT00353054 | PHASE4 | COMPLETED | Effect of Calcium/Vitamin D Supplementation on Body Weight and Fat Loss. |
| NCT00390637 | PHASE4 | COMPLETED | Diet, Obesity and Genes (DiOGenes) |
| NCT00415688 | PHASE4 | COMPLETED | Lifestyle Modification for Obesity-Related Type 2 Diabetes |
| NCT00433641 | PHASE4 | COMPLETED | Weight Loss in Response to Sibutramine (MERIDIA) is Influenced by the Inherited Genes |
| NCT00440375 | PHASE4 | COMPLETED | Effects of Rosiglitazone on Bone in Postmenopausal Diabetic Women |
| NCT00453557 | PHASE4 | COMPLETED | Mechanism of Growth Hormone Effects on Adipose Tissue |
| NCT00456885 | PHASE4 | COMPLETED | The Effect of Exenatide on Weight and Hunger in Obese, Healthy Women |
| NCT00463112 | PHASE4 | COMPLETED | Effect of Diet Plus Sibutramine on Hormonal and Metabolic Features in Overweight and Obese Women With PCOS |
| NCT00512187 | PHASE4 | COMPLETED | Moderate Weight Loss Makes Obese Patients With Severe Chronic Plaque Psoriasis Responsive to Sub-Optimal Dose of Cyclosporine: an Investigator Blinded, Controlled, Randomized Clinical Trial |
| NCT00516919 | PHASE4 | COMPLETED | Study of Behavioral Weight Loss Therapy for Obesity and Binge Eating in Monolingual Hispanic Persons |
| NCT00522470 | PHASE4 | COMPLETED | Effects of Rosiglitazone on Serum Ghrelin and Peptide YY Levels |
| NCT00537810 | PHASE4 | COMPLETED | Treatment of Binge Eating in Obese Patients in Primary Care |
| NCT00538486 | PHASE4 | COMPLETED | A Randomized, Double-Blind, Active Control Trial Comparing Effects of Telmisartan, Candesartan and Amlodipine, Alone or Plus Metformin, on Non-Diabetic, Obese Hypertensive Patients |
| NCT00584389 | PHASE4 | TERMINATED | The Effect of Rimonabant on Energy Expenditure, Fat Metabolism and Body Composition |
| NCT00585182 | PHASE4 | COMPLETED | Study to Evaluate Weight-based Enoxaparin Dosing in Obese Medical Patients at Risk for DVT |
| NCT00632840 | PHASE4 | COMPLETED | Pharmacological Regulation of Fat Transport in Metabolic Syndrome |
| NCT00636142 | PHASE4 | COMPLETED | Effects of Infliximab on Insulin Sensitivity and Beta Cell Function in Insulin Resistant Human Obesity |
| NCT00675987 | PHASE4 | COMPLETED | A Randomized Clinical Trial To Study Losartan On Endothelial Dysfunction and Insulin Resistance In Obese Patients |
| NCT00694811 | PHASE4 | COMPLETED | Effects of Re-Feeding Duration on Weight Maintenance After Weight Loss With Very-Low-Energy Diets (VLEDs) |
| NCT00699413 | PHASE4 | TERMINATED | Supplements for Controlling Resistance to Insulin |
| NCT00729963 | PHASE4 | COMPLETED | Sibutramine Versus Continuous Positive Airway Pressure (CPAP)in Obstructive Sleep Apnea (OSA) Patients |
Related Atlas pages
- Associated diseases: obesity due to leptin receptor gene deficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): familial meningioma, inherited obesity, meningioma, metabolic dysfunction-associated steatohepatitis, monogenic diabetes, obesity disorder, obesity due to congenital leptin deficiency, obesity due to leptin receptor gene deficiency, pediatric meningioma, peripheral precocious puberty