LGALS2
geneOn this page
Also known as HL14
Summary
LGALS2 (galectin 2, HGNC:6562) is a protein-coding gene on chromosome 22q13.1, encoding Galectin-2 (P05162). This protein binds beta-galactoside.
The protein encoded by this gene is a soluble beta-galactoside binding lectin. The encoded protein is found as a homodimer and can bind to lymphotoxin-alpha. A single nucleotide polymorphism in an intron of this gene can alter the transcriptional level of the protein, with a resultant increased risk of myocardial infarction.
Source: NCBI Gene 3957 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 28 total
- Druggable target: yes
- MANE Select transcript:
NM_006498
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6562 |
| Approved symbol | LGALS2 |
| Name | galectin 2 |
| Location | 22q13.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HL14 |
| Ensembl gene | ENSG00000100079 |
| Ensembl biotype | protein_coding |
| OMIM | 150571 |
| Entrez | 3957 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 2 protein_coding
ENST00000215886, ENST00000416480
RefSeq mRNA: 1 — MANE Select: NM_006498
NM_006498
CCDS: CCDS13950
Canonical transcript exons
ENST00000215886 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000653900 | 37570576 | 37570735 |
| ENSE00000880163 | 37570248 | 37570412 |
| ENSE00001045564 | 37579900 | 37580087 |
| ENSE00003785439 | 37571849 | 37571931 |
Expression profiles
Bgee: expression breadth ubiquitous, 197 present calls, max score 99.10.
FANTOM5 (CAGE): breadth broad, TPM avg 1.2747 / max 202.0789, expressed in 204 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 194073 | 1.7198 | 179 |
| 194071 | 1.0151 | 103 |
| 194072 | 0.2596 | 108 |
| 194074 | 0.1222 | 72 |
Top tissues by expression
282 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| gall bladder | UBERON:0002110 | 99.10 | gold quality |
| monocyte | CL:0000576 | 98.90 | gold quality |
| mononuclear cell | CL:0000842 | 98.70 | gold quality |
| leukocyte | CL:0000738 | 98.54 | gold quality |
| pancreatic ductal cell | CL:0002079 | 97.71 | silver quality |
| rectum | UBERON:0001052 | 96.88 | gold quality |
| granulocyte | CL:0000094 | 96.69 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 95.87 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 95.63 | gold quality |
| body of pancreas | UBERON:0001150 | 95.48 | gold quality |
| ileal mucosa | UBERON:0000331 | 94.66 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 94.54 | gold quality |
| nephron tubule | UBERON:0001231 | 94.42 | gold quality |
| colonic mucosa | UBERON:0000317 | 93.54 | gold quality |
| pancreas | UBERON:0001264 | 92.48 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 92.41 | gold quality |
| kidney epithelium | UBERON:0004819 | 91.39 | gold quality |
| small intestine | UBERON:0002108 | 90.41 | gold quality |
| kidney | UBERON:0002113 | 90.12 | gold quality |
| duodenum | UBERON:0002114 | 90.09 | gold quality |
| jejunal mucosa | UBERON:0000399 | 88.26 | gold quality |
| renal glomerulus | UBERON:0000074 | 87.92 | gold quality |
| islet of Langerhans | UBERON:0000006 | 87.54 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 87.47 | gold quality |
| cortex of kidney | UBERON:0001225 | 87.40 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 87.38 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 87.10 | gold quality |
| vermiform appendix | UBERON:0001154 | 86.69 | gold quality |
| lymph node | UBERON:0000029 | 85.93 | gold quality |
| transverse colon | UBERON:0001157 | 85.84 | gold quality |
Single-cell (SCXA)
Detected in 19 experiment(s), a significant marker in 19.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8495 | yes | 4371.46 |
| E-HCAD-9 | yes | 2117.28 |
| E-CURD-79 | yes | 1472.36 |
| E-CURD-55 | yes | 934.19 |
| E-GEOD-125970 | yes | 72.60 |
| E-HCAD-1 | yes | 60.77 |
| E-CURD-46 | yes | 41.08 |
| E-HCAD-10 | yes | 36.53 |
| E-MTAB-10553 | yes | 35.35 |
| E-CURD-122 | yes | 29.34 |
| E-MTAB-6701 | yes | 24.57 |
| E-MTAB-5061 | yes | 21.24 |
| E-GEOD-81547 | yes | 20.68 |
| E-CURD-88 | yes | 13.56 |
| E-MTAB-9467 | yes | 11.24 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 34)
- Our case-control association study in a Japanese population showed that a single nucleotide polymorphism in LGALS2 encoding galectin-2 is significantly associated with susceptibility to myocardial infarction (PMID:15129282)
- This study classifies galectin-2 as proapoptotic effector for activated T cells, raising a therapeutic perspective. (PMID:15356130)
- Fasting plasma glucose and serum insulin were statistically significantly associated with LGALS2 (PMID:16468038)
- Galectin 2 induces surface phosphatidylserine exposure in a carbohydrate-dependent fashion in activated, but not resting, human neutrophils and in several leukocyte cell lines. (PMID:16940423)
- no significant association of allele frequency with risk of myocardial infarction (PMID:17098239)
- polymorphism of LGALS2 was not associated with the severity of coronary atherosclerosis in Japanese and Korean populations (PMID:17493152)
- Data show that galectin-2 SNPs are not associated with myocardial infarction in two different German populations. (PMID:17497114)
- Galectin-2 was present in nuclei of Geneti-cally engineered human colon carcinoma cells with stable ectopic expression. (PMID:17999373)
- Data show that genotypes for the 3279C–>T polymorphism (rs7291467) of LGALS2 was associated (P<0.05) with the prevalence of atherothrombotic cerebral infarction. (PMID:18506375)
- Galectin-2 (LGALS2) 3279C/T polymorphism may be independently associated with diastolic blood pressure in patients with rheumatoid arthritis. (PMID:19330599)
- Galectin-2 is strongly expressed in inflammatory skin of autoimmune-prone transgenic mice, indicating that galectin-2 is up-regulated upon experimental cutaneous inflammation. (PMID:19380789)
- the LTA gene and LGALS2-C3279T are not associated with coronary artery disease (PMID:19726041)
- These results suggested differences in the inflammatory response to malaria in children and adults with polymorphisms of the galectin-2 gene. (PMID:20500087)
- Studies developed an ultimate rule for galectin recognition of disaccharides. (PMID:21514365)
- Data indicate that Gal-1, Gal-2, Gal-4, and partly Gal-3 bound to monocytes/macrophages. (PMID:21724180)
- results identify galectin-2 as a novel inhibitor of arteriogenesis and its modulation may constitute a new therapeutic strategy for the stimulation of arteriogenesis in patients with coronary artery disease. (PMID:21831908)
- low expression of galectin-2 was significantly associated with lymph node metastasis and advanced clinical stage in patients with gastric cancer (PMID:22015694)
- LTA and LGALS2 polymorphisms affect the subclinical phenotype of the coronary artery, which predisposes to the incidence of myocardial infarction. (PMID:22310064)
- Cys57Met (single-site) mutant and its monoPEGylated derivative can markedly reduce binding of galectin-2 to physiological binding sites (PMID:23581621)
- The increased circulation of galectins -2, -4 and -8 in cancer patients contributes substantially to the increased circulation of G-CSF, IL-6 and MCP-1 by interaction with the blood vascular endothelium (PMID:24384681)
- Gal-1, 2, and 3 levels were high in maintenance hemodialysis patients. Kidney transplantation improved gal-1, 2, and 3 levels. (PMID:24984218)
- Data suggest that expression of galectin 2 and galectin 2 mRNA is down-regulated in placental extravillous trophoblast and decidua in women with pre-eclampsia as compared to women with normal term pregnancy. (PMID:25707742)
- Galectin-2 binding to different circulating human monocyte subsets depends on monocyte surface expression levels of CD14. It skews human macrophages to a M1-like proinflammatory phenotype. (PMID:25884209)
- Lower LGALS2 gene expression is associated with acute myeloid leukemia. (PMID:25953264)
- PPARG rs1152002, AGTR1 rs5186, CXCL16 rs3744700 and LGALS2 rs7291467 polymorphisms may be closely related to the development of coronary heart disease (PMID:26045830)
- Galectin-1 was undetectable in normal and ulcerative colitis colonic epithelium, while galectin-2, galectin-3, and galectin-4 were strongly expressed. (PMID:26885508)
- Gal-3 was significantly downregulated only in the extravillous trophoblast of intrauterine growth restriction ( IUGR) placentas. In contrast, expressions of gal-2 and gal-13 were downregulated in both villous and extravillous trophoblast cells of IUGR placentas. (PMID:27070577)
- Data show that lactose binding to galectin-2 (Gal-2) stabilizes the lectin’s conformation. (PMID:27563008)
- Study observed decreased methylation at the DHCR24 locus in offspring of women with active pregnancy eating disorders (ED) and increased methylation at the LGALS2 locus in offspring of women with past ED compared to controls. (PMID:29093763)
- Syndecan 4, galectin 2, and death receptor 3 (DR3) as novel proteins in pathophysiology of preeclampsia. (PMID:31608721)
- Placental Galectin-2 Expression in Gestational Diabetes: A Systematic, Histological Analysis. (PMID:32244351)
- Genome-wide CRISPR screen identifies LGALS2 as an oxidative stress-responsive gene with an inhibitory function on colon tumor growth. (PMID:33110234)
- Gene polymorphisms of LGALS2, LGALS3 and LGALS9 in patients with rheumatoid arthritis. (PMID:34371260)
- Regulatory T Cell Apoptosis during Preeclampsia May Be Prevented by Gal-2. (PMID:35163802)
Cross-species orthologs
12 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lgals2b | ENSDARG00000038153 |
| danio_rerio | lgals2a | ENSDARG00000054942 |
| danio_rerio | lgals1l1 | ENSDARG00000088711 |
| mus_musculus | Lgals2 | ENSMUSG00000043501 |
| rattus_norvegicus | Lgals2 | ENSRNOG00000008539 |
| caenorhabditis_elegans | WBGENE00002264 | |
| caenorhabditis_elegans | WBGENE00002266 | |
| caenorhabditis_elegans | WBGENE00002269 | |
| caenorhabditis_elegans | WBGENE00002270 | |
| caenorhabditis_elegans | WBGENE00002271 | |
| caenorhabditis_elegans | WBGENE00004165 | |
| caenorhabditis_elegans | WBGENE00018255 |
Paralogs (16): LGALS14 (ENSG00000006659), LGALS1 (ENSG00000100097), LGALS13 (ENSG00000105198), CLC (ENSG00000105205), LGALS8 (ENSG00000116977), LGALSL (ENSG00000119862), LGALS3 (ENSG00000131981), LGALS12 (ENSG00000133317), LGALS9 (ENSG00000168961), LGALS9B (ENSG00000170298), LGALS4 (ENSG00000171747), LGALS9C (ENSG00000171916), LGALS7B (ENSG00000178934), LGALS7 (ENSG00000205076), LGALS16 (ENSG00000249861), GRIFIN (ENSG00000275572)
Protein
Protein identifiers
Galectin-2 — P05162 (reviewed: P05162)
Alternative names: Beta-galactoside-binding lectin L-14-II, HL14, Lactose-binding lectin 2, S-Lac lectin 2
All UniProt accessions (2): B0QYC9, P05162
UniProt curated annotations — full annotation on UniProt →
Function. This protein binds beta-galactoside. Its physiological function is not yet known.
Subunit / interactions. Homodimer.
RefSeq proteins (1): NP_006489* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001079 | Galectin_CRD | Domain |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR044156 | Galectin-like | Family |
Pfam: PF00337
UniProt features (17 total): strand 11, sequence variant 2, chain 1, domain 1, binding site 1, turn 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5DG2 | X-RAY DIFFRACTION | 1.61 |
| 5EWS | X-RAY DIFFRACTION | 2 |
| 1HLC | X-RAY DIFFRACTION | 2.9 |
| 5DG1 | X-RAY DIFFRACTION | 3.2 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P05162-F1 | 96.70 | 0.96 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (1): 65–71
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 141 (showing top):
GRUETZMANN_PANCREATIC_CANCER_DN, GOBP_INFLAMMATORY_RESPONSE, PEREZ_TP63_TARGETS, GOBP_T_CELL_HOMEOSTASIS, GOBP_LYMPHOCYTE_HOMEOSTASIS, DARWICHE_SKIN_TUMOR_PROMOTER_DN, DARWICHE_PAPILLOMA_RISK_LOW_UP, DARWICHE_PAPILLOMA_RISK_HIGH_DN, DARWICHE_SQUAMOUS_CELL_CARCINOMA_DN, DARWICHE_PAPILLOMA_PROGRESSION_RISK, GOBP_CELL_CELL_ADHESION, GOBP_POSITIVE_REGULATION_OF_RESPONSE_TO_EXTERNAL_STIMULUS, GOBP_REGULATION_OF_RESPONSE_TO_STRESS, MODULE_99, TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_10D_UP
GO Biological Process (4): T cell homeostasis (GO:0043029), positive regulation of apoptotic process (GO:0043065), positive regulation of inflammatory response (GO:0050729), cell-cell adhesion (GO:0098609)
GO Molecular Function (3): galactoside binding (GO:0016936), carbohydrate binding (GO:0030246), protein binding (GO:0005515)
GO Cellular Component (1): galectin complex (GO:1990724)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 2 |
| lymphocyte homeostasis | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| positive regulation of programmed cell death | 1 |
| inflammatory response | 1 |
| positive regulation of defense response | 1 |
| positive regulation of response to external stimulus | 1 |
| regulation of inflammatory response | 1 |
| cell adhesion | 1 |
| carbohydrate derivative binding | 1 |
| protein complex involved in cell-cell adhesion | 1 |
Protein interactions and networks
STRING
551 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LGALS2 | GAL | P22466 | 784 |
| LGALS2 | PAICS | P22234 | 767 |
| LGALS2 | LTA | P01374 | 739 |
| LGALS2 | CHD7 | Q9P2D1 | 720 |
| LGALS2 | CLC | Q05315 | 699 |
| LGALS2 | SPX | Q9BT56 | 698 |
| LGALS2 | GALR2 | O43603 | 604 |
| LGALS2 | LGALS13 | Q9UHV8 | 599 |
| LGALS2 | GALR3 | O60755 | 580 |
| LGALS2 | HTR1A | P08908 | 521 |
| LGALS2 | NPY1R | P25929 | 508 |
| LGALS2 | LGALS14 | Q8TCE9 | 507 |
| LGALS2 | GALR1 | P47211 | 506 |
| LGALS2 | CAVIN2 | O95810 | 491 |
| LGALS2 | LGALS9 | O00182 | 447 |
IntAct
28 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LGALS2 | SDCBP2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| SDCBP2 | LGALS2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| SDCBP | LGALS2 | psi-mi:“MI:0915”(physical association) | 0.720 |
| LGALS2 | SDCBP | psi-mi:“MI:0915”(physical association) | 0.720 |
| LGALS2 | NTAQ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LTA | LGALS2 | psi-mi:“MI:0915”(physical association) | 0.520 |
| LGALS2 | LTA | psi-mi:“MI:0915”(physical association) | 0.520 |
| LGALS2 | UMOD | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| LGALS2 | TUBA1A | psi-mi:“MI:0915”(physical association) | 0.400 |
| SDCBP | LGALS2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CFTR | LGALS2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| LGALS2 | SDCBP | psi-mi:“MI:0915”(physical association) | 0.000 |
| LGALS2 | SDCBP2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| NTAQ1 | LGALS2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| SDCBP | LGALS2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| IKBKG | LGALS2 | psi-mi:“MI:0407”(direct interaction) | 0.000 |
BioGRID (17): SDCBP (Two-hybrid), SDCBP2 (Two-hybrid), TRIM16 (Affinity Capture-Western), SDCBP2 (Two-hybrid), SDCBP (Two-hybrid), WDYHV1 (Two-hybrid), LGALS2 (PCA), LGALS2 (Affinity Capture-MS), LGALS2 (Reconstituted Complex), APP (Reconstituted Complex), LGALS2 (Reconstituted Complex), LTA (Reconstituted Complex), LTA (Affinity Capture-Western), LGALS2 (Affinity Capture-Western), TUBA1B (Affinity Capture-MS)
ESM2 similar proteins: A8MUM7, C0HJQ1, C0HJR3, O00182, O00214, O08573, O44126, O54891, O54974, O55060, P05162, P07583, P09382, P11116, P11762, P16045, P23668, P36573, P38552, P47929, P47967, P48538, P56217, P56470, P61801, P81184, P97590, P97840, Q05315, Q09581, Q1ECW6, Q29058, Q3B8N2, Q3MHZ8, Q3T0D6, Q49I35, Q504A5, Q5R7M1, Q62665, Q68FJ4
Diamond homologs: A4D1Z8, C0HJQ1, C0HJR3, O00214, O44126, O54974, P05162, P07583, P08520, P08699, P09382, P11116, P11762, P16045, P16110, P23668, P26788, P38486, P47845, P47929, P47953, P48538, P56217, P81184, P82447, P97590, Q09581, Q29373, Q3MHZ8, Q49I35, Q5R7M1, Q62665, Q801X7, Q9CQW5, Q9Z144, O54891, P17931, P56470, Q29058, Q3T0D6
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
28 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 20 |
| Likely benign | 3 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
596 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 22:37570731:CAAAG:C | acceptor_gain | 1.0000 |
| 22:37570736:C:CC | acceptor_gain | 1.0000 |
| 22:37570570:CCTCA:C | donor_loss | 0.9900 |
| 22:37570571:CTCAC:C | donor_loss | 0.9900 |
| 22:37570572:TCAC:T | donor_loss | 0.9900 |
| 22:37570574:A:T | donor_loss | 0.9900 |
| 22:37570575:C:CT | donor_loss | 0.9900 |
| 22:37570577:TTG:T | donor_gain | 0.9900 |
| 22:37570578:TG:T | donor_gain | 0.9900 |
| 22:37570614:C:A | donor_gain | 0.9900 |
| 22:37570817:CAAG:C | acceptor_gain | 0.9900 |
| 22:37570821:C:CC | acceptor_gain | 0.9900 |
| 22:37571847:A:AC | donor_gain | 0.9900 |
| 22:37571847:AC:A | donor_gain | 0.9900 |
| 22:37571848:C:CC | donor_gain | 0.9900 |
| 22:37571848:CC:C | donor_gain | 0.9900 |
| 22:37571848:CCCAT:C | donor_gain | 0.9900 |
| 22:37571928:CCCC:C | acceptor_gain | 0.9900 |
| 22:37571929:CCCC:C | acceptor_gain | 0.9900 |
| 22:37577068:AGCC:A | donor_gain | 0.9900 |
| 22:37579894:CCTCA:C | donor_loss | 0.9900 |
| 22:37579895:CTCA:C | donor_loss | 0.9900 |
| 22:37579896:TCA:T | donor_loss | 0.9900 |
| 22:37579897:CA:C | donor_loss | 0.9900 |
| 22:37570413:C:CC | acceptor_gain | 0.9800 |
| 22:37570575:CCT:C | donor_gain | 0.9800 |
| 22:37570583:TCTG:T | donor_gain | 0.9800 |
| 22:37570613:T:TA | donor_gain | 0.9800 |
| 22:37571843:GCT:G | donor_loss | 0.9800 |
| 22:37571844:CT:C | donor_loss | 0.9800 |
AlphaMissense
886 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 22:37570347:A:C | F105L | 0.974 |
| 22:37570347:A:T | F105L | 0.974 |
| 22:37570349:A:G | F105L | 0.974 |
| 22:37570732:A:C | F31L | 0.951 |
| 22:37570732:A:T | F31L | 0.951 |
| 22:37570734:A:G | F31L | 0.951 |
| 22:37570675:G:C | F50L | 0.931 |
| 22:37570675:G:T | F50L | 0.931 |
| 22:37570677:A:G | F50L | 0.931 |
| 22:37570383:G:C | F93L | 0.930 |
| 22:37570383:G:T | F93L | 0.930 |
| 22:37570385:A:G | F93L | 0.930 |
| 22:37570688:A:G | F46S | 0.929 |
| 22:37570650:A:G | S59P | 0.927 |
| 22:37570384:A:G | F93S | 0.917 |
| 22:37570679:C:G | R49P | 0.916 |
| 22:37571879:A:G | I20T | 0.916 |
| 22:37570630:C:A | W65C | 0.915 |
| 22:37570630:C:G | W65C | 0.915 |
| 22:37570727:A:C | I33S | 0.914 |
| 22:37570597:G:C | F76L | 0.912 |
| 22:37570597:G:T | F76L | 0.912 |
| 22:37570599:A:G | F76L | 0.912 |
| 22:37570398:A:C | F88L | 0.907 |
| 22:37570398:A:T | F88L | 0.907 |
| 22:37570400:A:G | F88L | 0.907 |
| 22:37570727:A:G | I33T | 0.907 |
| 22:37570687:G:C | F46L | 0.904 |
| 22:37570687:G:T | F46L | 0.904 |
| 22:37570689:A:G | F46L | 0.904 |
dbSNP variants (sampled 300 via entrez): RS1000161059 (22:37577250 C>G,T), RS1000359445 (22:37572699 G>A), RS1000424665 (22:37581457 A>C), RS1000888932 (22:37578017 A>G), RS1000964964 (22:37573856 G>A), RS1000981786 (22:37577655 AG>A,AGG), RS1001164259 (22:37572998 G>A,T), RS1001519971 (22:37578318 C>G), RS1001572305 (22:37577937 G>T), RS1001745234 (22:37573141 C>G,T), RS1002196227 (22:37572926 G>A), RS1002517781 (22:37579939 C>A,T), RS1002792847 (22:37574275 G>A), RS1003151357 (22:37574431 G>A,T), RS1003224306 (22:37574810 C>T)
Disease associations
OMIM: gene MIM:150571 | disease phenotypes: MIM:608446
GenCC curated gene-disease
Mondo (1): myocardial infarction, susceptibility to (MONDO:0012039)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001308_19 | Response to anti-depressant treatment in major depressive disorder | 2.000000e-06 |
| GCST006585_739 | Blood protein levels | 2.000000e-20 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006321 | antidepressant-induced dizziness |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5977 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
3 potent at pChembl≥5 of 4 total, top 3 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.30 | IC50 | 0.5 | nM | GALANIN |
| 9.19 | Ki | 0.64 | nM | GALANIN |
| 5.16 | Kd | 6900 | nM | CHEMBL4446622 |
PubChem BioAssay actives
3 with measured affinity, of 64 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (3S)-3-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2S)-2-[[(2S,3S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-1-[2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[2-[[(2S)-2-[[(2S)-2-[[(2S)-4-amino-2-[[(2S)-2-[[(2S,3R)-2-[[(2S)-2-[(2-aminoacetyl)amino]-3-(1H-indol-3-yl)propanoyl]amino]-3-hydroxybutanoyl]amino]-4-methylpentanoyl]amino]-4-oxobutanoyl]amino]-3-hydroxypropanoyl]amino]propanoyl]amino]acetyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-4-methylpentanoyl]amino]-4-methylpentanoyl]amino]acetyl]pyrrolidine-2-carbonyl]amino]-3-(1H-imidazol-4-yl)propanoyl]amino]propanoyl]amino]-3-methylpentanoyl]amino]-3-carboxypropanoyl]amino]-4-oxobutanoyl]amino]-3-(1H-imidazol-4-yl)propanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-hydroxypropanoyl]amino]-3-phenylpropanoyl]amino]-3-(1H-imidazol-4-yl)propanoyl]amino]-4-[[(2S)-6-amino-1-[[(2S)-1-[[2-[[(2S)-1-[[(2S)-1-amino-1-oxopropan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-1-oxohexan-2-yl]amino]-4-oxobutanoic acid | 2198778: Inhibition of GAL2 (unknown origin) | ic50 | 0.0005 | uM |
| 3-[[(2S,3R,4S,5S,6R)-2-[(2S,3R,4S,5S,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-[(2-oxochromen-3-yl)methoxy]oxan-2-yl]sulfanyl-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]oxymethyl]chromen-2-one | 1628953: Competitive binding affinity to recombinant human galectin-2 after 5 mins in presence of fluorescent probe ,3’-dideoxy-3-[4-(fluorescein-5-yl-carbonylaminomethyl)-1H-1,2,3-triazol-1-yl]-3’-(3,5-dimethoxy-benzamido)-1,1’-sulfanediyl-di-beta-D-galactopyranoside by fluorescence polarization assay | kd | 6.9000 | uM |
CTD chemical–gene interactions
44 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects expression, affects methylation, decreases expression, increases expression | 5 |
| Tetrachlorodibenzodioxin | decreases expression | 3 |
| Cyclosporine | decreases expression | 3 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance, increases expression | 2 |
| Air Pollutants | affects expression, increases abundance, increases expression | 2 |
| Nickel | increases expression | 2 |
| Particulate Matter | affects expression, increases abundance, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| OTX015 | decreases expression | 1 |
| mivebresib | decreases expression | 1 |
| dicrotophos | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | decreases expression | 1 |
| bisphenol A | affects expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| 9,10-dihydro-9,10-dihydroxybenzo(a)pyrene | decreases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| periodate-oxidized adenosine | affects expression | 1 |
| K 7174 | decreases expression | 1 |
| pinostrobin | increases expression | 1 |
| ormosil | affects binding, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Bortezomib | decreases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 1 |
| Benzene | decreases expression | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Diethylhexyl Phthalate | increases expression | 1 |
| Estradiol | increases expression | 1 |
| Hydralazine | increases expression, affects cotreatment | 1 |
ChEMBL screening assays
12 unique, capped per target: 12 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1670072 | Binding | Binding affinity to human galectin-2 by surface plasmon resonance method | Synthesis and galectin-binding activities of mercaptododecyl glycosides containing a terminal β-galactosyl group. — Bioorg Med Chem Lett |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): myocardial infarction, susceptibility to