LGALS7B
gene geneOn this page
Also known as GAL7
Summary
LGALS7B (galectin 7B, HGNC:34447) is a protein-coding gene on chromosome 19q13.2, encoding Galectin-7 (P47929). Could be involved in cell-cell and/or cell-matrix interactions necessary for normal growth control.
The galectins are a family of beta-galactoside-binding proteins implicated in modulating cell-cell and cell-matrix interactions. Differential and in situ hybridization studies indicate that this lectin is specifically expressed in keratinocytes and found mainly in stratified squamous epithelium. A duplicate copy of this gene (GeneID:3963) is found adjacent to, but on the opposite strand on chromosome 19.
Source: NCBI Gene 653499 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 21 total
- Druggable target: yes
- MANE Select transcript:
NM_001042507
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:34447 |
| Approved symbol | LGALS7B |
| Name | galectin 7B |
| Location | 19q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | GAL7 |
| Ensembl gene | ENSG00000178934 |
| Ensembl biotype | protein_coding |
| OMIM | 617139 |
| Entrez | 653499 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 1 protein_coding, 1 retained_intron
ENST00000314980, ENST00000600304
RefSeq mRNA: 1 — MANE Select: NM_001042507
NM_001042507
CCDS: CCDS42565
Canonical transcript exons
ENST00000314980 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002443934 | 38789200 | 38789232 |
| ENSE00002444531 | 38790689 | 38790890 |
| ENSE00002498739 | 38789616 | 38789704 |
| ENSE00003178102 | 38791580 | 38791754 |
Expression profiles
Bgee: expression breadth ubiquitous, 111 present calls, max score 99.76.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.8099 / max 274.5322, expressed in 61 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 175663 | 0.8099 | 61 |
Top tissues by expression
133 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| skin of abdomen | UBERON:0001416 | 99.76 | gold quality |
| zone of skin | UBERON:0000014 | 99.61 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 99.58 | gold quality |
| skin of leg | UBERON:0001511 | 99.50 | gold quality |
| esophagus mucosa | UBERON:0002469 | 98.92 | gold quality |
| vagina | UBERON:0000996 | 93.41 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 85.72 | gold quality |
| esophagus | UBERON:0001043 | 83.58 | gold quality |
| minor salivary gland | UBERON:0001830 | 81.11 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 80.05 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 77.60 | gold quality |
| spleen | UBERON:0002106 | 75.75 | gold quality |
| gastrocnemius | UBERON:0001388 | 73.12 | gold quality |
| ectocervix | UBERON:0012249 | 71.07 | gold quality |
| right lung | UBERON:0002167 | 69.58 | gold quality |
| mucosa of stomach | UBERON:0001199 | 69.41 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 69.23 | gold quality |
| heart left ventricle | UBERON:0002084 | 68.81 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 68.53 | gold quality |
| apex of heart | UBERON:0002098 | 68.51 | gold quality |
| right atrium auricular region | UBERON:0006631 | 68.31 | gold quality |
| body of stomach | UBERON:0001161 | 68.27 | gold quality |
| right lobe of liver | UBERON:0001114 | 67.96 | gold quality |
| omental fat pad | UBERON:0010414 | 67.87 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 67.83 | gold quality |
| uterine cervix | UBERON:0000002 | 67.81 | gold quality |
| popliteal artery | UBERON:0002250 | 67.65 | gold quality |
| tibial artery | UBERON:0007610 | 67.62 | gold quality |
| adipose tissue | UBERON:0001013 | 67.31 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 67.09 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8142 | yes | 1854.80 |
| E-HCAD-1 | yes | 285.56 |
| E-MTAB-8221 | yes | 240.03 |
| E-MTAB-6653 | yes | 193.68 |
| E-GEOD-139324 | yes | 42.16 |
| E-ANND-3 | yes | 35.59 |
| E-MTAB-10596 | no | 3243.62 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): TAF1
Literature-anchored findings (GeneRIF, showing 2)
- An association was seen between the level of presence of galectins-1 and -7 and neoplastic progression of hypopharyngeal and laryngeal squamous cell carcinomas. (PMID:18315601)
- serum concentration was significantly elevated in women (weeks 10-12 and 17-20) who subsequently developed pre-eclampsia (PMID:24534543)
Cross-species orthologs
24 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lgals3b | ENSDARG00000044001 |
| danio_rerio | si:dkey-95h12.2 | ENSDARG00000092923 |
| mus_musculus | Lgals7 | ENSMUSG00000053522 |
| rattus_norvegicus | Lgals7 | ENSRNOG00000020380 |
| drosophila_melanogaster | galectin | FBGN0031213 |
| drosophila_melanogaster | CG11374 | FBGN0031214 |
| drosophila_melanogaster | CG13950 | FBGN0031289 |
| caenorhabditis_elegans | WBGENE00002264 | |
| caenorhabditis_elegans | WBGENE00002266 | |
| caenorhabditis_elegans | WBGENE00002269 | |
| caenorhabditis_elegans | WBGENE00002270 | |
| caenorhabditis_elegans | WBGENE00002271 | |
| caenorhabditis_elegans | WBGENE00004165 | |
| caenorhabditis_elegans | C27C7.5 | WBGENE00007768 |
| caenorhabditis_elegans | F46A8.3 | WBGENE00009746 |
| caenorhabditis_elegans | F46A8.4 | WBGENE00009747 |
| caenorhabditis_elegans | F46A8.5 | WBGENE00009748 |
| caenorhabditis_elegans | F46A8.8 | WBGENE00009751 |
| caenorhabditis_elegans | WBGENE00017080 | |
| caenorhabditis_elegans | WBGENE00018255 | |
| caenorhabditis_elegans | WBGENE00018649 | |
| caenorhabditis_elegans | WBGENE00018650 | |
| caenorhabditis_elegans | WBGENE00018651 | |
| caenorhabditis_elegans | WBGENE00235368 |
Paralogs (16): LGALS14 (ENSG00000006659), LGALS2 (ENSG00000100079), LGALS1 (ENSG00000100097), LGALS13 (ENSG00000105198), CLC (ENSG00000105205), LGALS8 (ENSG00000116977), LGALSL (ENSG00000119862), LGALS3 (ENSG00000131981), LGALS12 (ENSG00000133317), LGALS9 (ENSG00000168961), LGALS9B (ENSG00000170298), LGALS4 (ENSG00000171747), LGALS9C (ENSG00000171916), LGALS7 (ENSG00000205076), LGALS16 (ENSG00000249861), GRIFIN (ENSG00000275572)
Protein
Protein identifiers
Galectin-7 — P47929 (reviewed: P47929)
Alternative names: HKL-14, PI7, p53-induced gene 1 protein
All UniProt accessions (1): P47929
UniProt curated annotations — full annotation on UniProt →
Function. Could be involved in cell-cell and/or cell-matrix interactions necessary for normal growth control. Pro-apoptotic protein that functions intracellularly upstream of JNK activation and cytochrome c release.
Subunit / interactions. Monomer.
Subcellular location. Cytoplasm. Nucleus. Secreted.
Tissue specificity. Mainly expressed in stratified squamous epithelium.
Induction. By p53/TP53.
RefSeq proteins (1): NP_001035972* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001079 | Galectin_CRD | Domain |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR044156 | Galectin-like | Family |
Pfam: PF00337
UniProt features (15 total): strand 10, chain 1, domain 1, helix 1, binding site 1, turn 1
Structure
Experimental structures (PDB)
35 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3ZXF | X-RAY DIFFRACTION | 1.38 |
| 4UW3 | X-RAY DIFFRACTION | 1.48 |
| 3ZXE | X-RAY DIFFRACTION | 1.67 |
| 6VTO | X-RAY DIFFRACTION | 1.69 |
| 4UW4 | X-RAY DIFFRACTION | 1.77 |
| 4UW6 | X-RAY DIFFRACTION | 1.79 |
| 7TRO | X-RAY DIFFRACTION | 1.8 |
| 7XAC | X-RAY DIFFRACTION | 1.8 |
| 5H9S | X-RAY DIFFRACTION | 1.82 |
| 7N57 | X-RAY DIFFRACTION | 1.83 |
| 7TKX | X-RAY DIFFRACTION | 1.83 |
| 7TKZ | X-RAY DIFFRACTION | 1.83 |
| 7TKW | X-RAY DIFFRACTION | 1.85 |
| 1BKZ | X-RAY DIFFRACTION | 1.9 |
| 3GAL | X-RAY DIFFRACTION | 1.9 |
| 6VTS | X-RAY DIFFRACTION | 1.9 |
| 5H9Q | X-RAY DIFFRACTION | 1.93 |
| 4GAL | X-RAY DIFFRACTION | 1.95 |
| 6VTQ | X-RAY DIFFRACTION | 1.95 |
| 7N8G | X-RAY DIFFRACTION | 1.95 |
| 7TRN | X-RAY DIFFRACTION | 1.95 |
| 2GAL | X-RAY DIFFRACTION | 2 |
| 5GAL | X-RAY DIFFRACTION | 2 |
| 7XBL | X-RAY DIFFRACTION | 2 |
| 4UW5 | X-RAY DIFFRACTION | 2.04 |
| 7N4O | X-RAY DIFFRACTION | 2.05 |
| 7N6C | X-RAY DIFFRACTION | 2.1 |
| 4XBQ | X-RAY DIFFRACTION | 2.23 |
| 6VTP | X-RAY DIFFRACTION | 2.3 |
| 6VTR | X-RAY DIFFRACTION | 2.3 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P47929-F1 | 96.80 | 0.95 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (1): 70–76
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-9725554 | Differentiation of Keratinocytes in Interfollicular Epidermis in Mammalian Skin |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-9734767 | Developmental Cell Lineages |
MSigDB gene sets: 17 (showing top):
GOBP_HETEROPHILIC_CELL_CELL_ADHESION, GOBP_CELL_CELL_ADHESION, BLANCO_MELO_BRONCHIAL_EPITHELIAL_CELLS_INFLUENZA_A_INFECTION_DN, TRAVAGLINI_LUNG_BASAL_CELL, TRAVAGLINI_LUNG_PROXIMAL_BASAL_CELL, TRAVAGLINI_LUNG_PROLIFERATING_BASAL_CELL, GOBP_CELL_ADHESION, HE_LIM_SUN_FETAL_LUNG_C1_LATE_BASAL_CELL, HE_LIM_SUN_FETAL_LUNG_C1_MID_BASAL_CELL, HE_LIM_SUN_FETAL_LUNG_C1_PROXIMAL_BASAL_CELL, HE_LIM_SUN_FETAL_LUNG_C3_LYMPHATIC_ENDOTHELIAL_CELL, HE_LIM_SUN_FETAL_LUNG_C3_SCG3_POS_LYMPHATIC_ENDOTHELIAL_CELL, REACTOME_DIFFERENTIATION_OF_KERATINOCYTES_IN_INTERFOLLICULAR_EPIDERMIS_IN_MAMMALIAN_SKIN, REACTOME_DEVELOPMENTAL_CELL_LINEAGES, REACTOME_DEVELOPMENTAL_CELL_LINEAGES_OF_THE_INTEGUMENTARY_SYSTEM
GO Biological Process (2): apoptotic process (GO:0006915), heterophilic cell-cell adhesion (GO:0007157)
GO Molecular Function (2): carbohydrate binding (GO:0030246), protein binding (GO:0005515)
GO Cellular Component (5): obsolete extracellular space (GO:0005615), nucleus (GO:0005634), cytoplasm (GO:0005737), extracellular exosome (GO:0070062), extracellular region (GO:0005576)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Developmental Cell Lineages of the Integumentary System | 1 |
| Developmental Biology | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 2 |
| cellular anatomical structure | 2 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| cell-cell adhesion | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
768 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LGALS7B | LGALS3BP | Q08380 | 905 |
| LGALS7B | BCL2 | P10415 | 820 |
| LGALS7B | SMAD3 | P84022 | 698 |
| LGALS7B | PAICS | P22234 | 669 |
| LGALS7B | CHD7 | Q9P2D1 | 602 |
| LGALS7B | SELE | P16111 | 511 |
| LGALS7B | KRTDAP | P60985 | 509 |
| LGALS7B | H4C16 | P02304 | 493 |
| LGALS7B | H4C7 | Q99525 | 486 |
| LGALS7B | MGAT5 | Q09328 | 470 |
| LGALS7B | CTR9 | Q6PD62 | 461 |
| LGALS7B | SBSN | Q6UWP8 | 452 |
| LGALS7B | UCHL5 | Q9Y5K5 | 443 |
| LGALS7B | HCFC1 | P51610 | 439 |
| LGALS7B | CD209 | Q9NNX6 | 436 |
IntAct
143 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| JADE1 | KAT7 | psi-mi:“MI:0914”(association) | 0.720 |
| AEBP2 | EED | psi-mi:“MI:0914”(association) | 0.650 |
| RCCD1 | SPAG9 | psi-mi:“MI:0914”(association) | 0.640 |
| CCNC | MED19 | psi-mi:“MI:0914”(association) | 0.640 |
| LGALS7 | DDIT4L | psi-mi:“MI:0915”(physical association) | 0.560 |
| LGALS7 | TAB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LGALS7 | SSBP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LGALS7 | YAF2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HSPA6 | LGALS7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LGALS7 | LSM2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TGM5 | LGALS7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TBC1D22B | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| RBM24 | PPL | psi-mi:“MI:0914”(association) | 0.530 |
| ZSCAN12 | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| GDF5 | SERPINB7 | psi-mi:“MI:0914”(association) | 0.530 |
| SSBP2 | CLEC18A | psi-mi:“MI:0914”(association) | 0.530 |
| E6 | CASK | psi-mi:“MI:0914”(association) | 0.520 |
| Tax | TAX1BP3 | psi-mi:“MI:0914”(association) | 0.520 |
| ESR1 | psi-mi:“MI:0914”(association) | 0.460 | |
| LGALS7 | S | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| LGALS7 | LGALS7 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GNAT3 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| Xpo1 | IFT56 | psi-mi:“MI:0914”(association) | 0.350 |
| DAG1 | AGRN | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (249): LGALS7 (Affinity Capture-MS), LGALS7 (Affinity Capture-MS), LGALS7B (Affinity Capture-MS), LGALS7 (Affinity Capture-MS), LGALS7 (Affinity Capture-MS), LGALS7 (Affinity Capture-MS), LGALS7 (Affinity Capture-MS), TUBA3C (Affinity Capture-MS), LGALS7B (Affinity Capture-MS), USP4 (Affinity Capture-MS), DPYSL5 (Affinity Capture-MS), DPYSL4 (Affinity Capture-MS), NAMPT (Affinity Capture-MS), DPYSL2 (Affinity Capture-MS), GAB1 (Affinity Capture-MS)
ESM2 similar proteins: A8MUM7, C0HJQ1, C0HJR3, O00182, O00214, O08573, O44126, O54891, O54974, O55060, P05162, P07583, P09382, P11116, P11762, P16045, P23668, P36573, P38552, P47929, P47967, P48538, P56217, P56470, P61801, P81184, P97590, P97840, Q05315, Q09581, Q1ECW6, Q29058, Q3B8N2, Q3MHZ8, Q3T0D6, Q49I35, Q504A5, Q5R7M1, Q62665, Q68FJ4
Diamond homologs: A8MUM7, O00182, O08573, O54891, P38486, P38552, P47929, P79238, P97400, P97840, Q05315, Q29058, Q3B8N2, Q3MHZ8, Q3T0D6, Q6DKI2, Q8K419, Q8TCE9, Q9UHV8, A4D1Z8, C0HJQ1, C0HJR3, O00214, O44126, O54974, P05162, P07583, P08520, P08699, P09382, P11116, P11762, P16045, P16110, P23668, P26788, P47845, P47953, P48538, P56217
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
21 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 19 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
556 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:38790684:TCCA:T | acceptor_loss | 1.0000 |
| 19:38790685:CCA:C | acceptor_loss | 1.0000 |
| 19:38790686:CA:C | acceptor_loss | 1.0000 |
| 19:38790687:A:AG | acceptor_gain | 1.0000 |
| 19:38790687:AG:A | acceptor_gain | 1.0000 |
| 19:38790688:G:GA | acceptor_gain | 1.0000 |
| 19:38790688:GG:G | acceptor_gain | 1.0000 |
| 19:38790688:GGT:G | acceptor_gain | 1.0000 |
| 19:38790688:GGTT:G | acceptor_gain | 1.0000 |
| 19:38790688:GGTTC:G | acceptor_gain | 1.0000 |
| 19:38790887:CAAGG:C | donor_loss | 1.0000 |
| 19:38790891:G:GC | donor_loss | 1.0000 |
| 19:38790891:G:GG | donor_gain | 1.0000 |
| 19:38790892:T:G | donor_loss | 1.0000 |
| 19:38789229:GTCC:G | donor_gain | 0.9800 |
| 19:38789233:G:GG | donor_gain | 0.9800 |
| 19:38789701:GCAG:G | donor_gain | 0.9800 |
| 19:38789702:CAG:C | donor_loss | 0.9800 |
| 19:38789703:AG:A | donor_loss | 0.9800 |
| 19:38789704:GGT:G | donor_loss | 0.9800 |
| 19:38789705:GTGAG:G | donor_loss | 0.9800 |
| 19:38791574:CTGCA:C | acceptor_loss | 0.9800 |
| 19:38791575:TGCA:T | acceptor_loss | 0.9800 |
| 19:38791576:GCAGG:G | acceptor_loss | 0.9800 |
| 19:38791577:CAGGC:C | acceptor_loss | 0.9800 |
| 19:38791578:A:T | acceptor_loss | 0.9800 |
| 19:38791579:GGCC:G | acceptor_gain | 0.9800 |
| 19:38789706:T:A | donor_loss | 0.9700 |
| 19:38791578:A:AG | acceptor_gain | 0.9700 |
| 19:38791579:G:GG | acceptor_gain | 0.9700 |
AlphaMissense
877 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:38790803:G:C | W70C | 0.991 |
| 19:38790803:G:T | W70C | 0.991 |
| 19:38790886:T:C | F98S | 0.990 |
| 19:38790801:T:A | W70R | 0.989 |
| 19:38790801:T:C | W70R | 0.989 |
| 19:38790690:T:C | F33L | 0.988 |
| 19:38790691:T:C | F33S | 0.988 |
| 19:38790692:C:A | F33L | 0.988 |
| 19:38790692:C:G | F33L | 0.988 |
| 19:38790745:T:C | F51S | 0.988 |
| 19:38789674:T:A | I22N | 0.987 |
| 19:38790852:T:C | F87L | 0.987 |
| 19:38790854:C:A | F87L | 0.987 |
| 19:38790854:C:G | F87L | 0.987 |
| 19:38791610:T:C | F110L | 0.987 |
| 19:38791611:T:C | F110S | 0.987 |
| 19:38791612:C:A | F110L | 0.987 |
| 19:38791612:C:G | F110L | 0.987 |
| 19:38789674:T:C | I22T | 0.984 |
| 19:38789686:T:A | V26D | 0.984 |
| 19:38789679:G:C | G24R | 0.982 |
| 19:38790782:C:A | N63K | 0.982 |
| 19:38790782:C:G | N63K | 0.982 |
| 19:38789674:T:G | I22S | 0.981 |
| 19:38790749:C:A | N52K | 0.981 |
| 19:38790749:C:G | N52K | 0.981 |
| 19:38790865:T:G | I91S | 0.981 |
| 19:38790703:T:C | L37P | 0.979 |
| 19:38790865:T:A | I91N | 0.979 |
| 19:38789680:G:A | G24D | 0.978 |
dbSNP variants (sampled 300 via entrez): RS1000840194 (19:38792200 C>T), RS1000870390 (19:38774633 C>G,T), RS1001858294 (19:38774562 T>C), RS1002374261 (19:38774353 C>T), RS1002388033 (19:38791400 TA>T,TAA), RS1002605566 (19:38792118 G>T), RS1002756687 (19:38775400 T>C), RS1003389401 (19:38788520 T>C), RS1005216986 (19:38774035 A>T), RS1006007088 (19:38791163 G>A), RS1006369016 (19:38789324 G>A), RS1007195063 (19:38788774 T>C,G), RS1007414434 (19:38788979 G>A), RS1008193733 (19:38787677 G>T), RS1008417963 (19:38787909 A>G)
Disease associations
OMIM: gene MIM:617139 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006999_4 | Logical memory (immediate recall) in mild cognitive impairment | 4.000000e-07 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004874 | memory performance |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5008 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
12 measured of 16 human assays (16 total across all organisms); most potent 12 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| N-[(2R,3R,4R,5S,6R)-5-{[(2S,3R,4S,5R,6R)-4-[(butylcarbamothioyl)amino]-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-hydroxy-6-(hydroxymethyl)-2-methoxyoxan-3-yl]acetamide | KD | 23000 nM |
| N-[(2R,3R,4R,5S,6R)-5-{[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-{[(3-hydroxypropyl)carbamothioyl]amino}oxan-2-yl]oxy}-4-hydroxy-6-(hydroxymethyl)-2-methoxyoxan-3-yl]acetamide | KD | 23000 nM |
| N-[(2R,3R,4R,5S,6R)-5-{[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-[(prop-2-en-1-ylcarbamothioyl)amino]oxan-2-yl]oxy}-4-hydroxy-6-(hydroxymethyl)-2-methoxyoxan-3-yl]acetamide | KD | 34000 nM |
| N-[(2R,3R,4R,5S,6R)-5-{[(2S,3R,4S,5R,6R)-4-[(cyclohexylcarbamothioyl)amino]-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-hydroxy-6-(hydroxymethyl)-2-methoxyoxan-3-yl]acetamide | KD | 40000 nM |
| N-[(2R,3R,4R,5S,6R)-5-{[(2S,3R,4S,5R,6R)-4-(carbamothioylamino)-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-hydroxy-6-(hydroxymethyl)-2-methoxyoxan-3-yl]acetamide | KD | 43000 nM |
| N-[(2R,3R,4R,5S,6R)-5-{[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-{[(pyridin-3-ylmethyl)carbamothioyl]amino}oxan-2-yl]oxy}-4-hydroxy-6-(hydroxymethyl)-2-methoxyoxan-3-yl]acetamide | KD | 43000 nM |
| N-[(2R,3R,4R,5S,6R)-5-{[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-[(phenylcarbamothioyl)amino]oxan-2-yl]oxy}-4-hydroxy-6-(hydroxymethyl)-2-methoxyoxan-3-yl]acetamide | KD | 45000 nM |
| N-[(2R,3R,4R,5S,6R)-5-{[(2S,3R,4S,5R,6R)-4-[(diethylcarbamothioyl)amino]-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-hydroxy-6-(hydroxymethyl)-2-methoxyoxan-3-yl]acetamide | KD | 46000 nM |
| N-[(2R,3R,4R,5S,6R)-5-{[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-[(methylcarbamothioyl)amino]oxan-2-yl]oxy}-4-hydroxy-6-(hydroxymethyl)-2-methoxyoxan-3-yl]acetamide | KD | 49000 nM |
| N-[(2R,3R,4R,5S,6R)-5-{[(2S,3R,4S,5R,6R)-3,5-dihydroxy-4-{[(2-hydroxyethyl)carbamothioyl]amino}-6-(hydroxymethyl)oxan-2-yl]oxy}-4-hydroxy-6-(hydroxymethyl)-2-methoxyoxan-3-yl]acetamide | KD | 49000 nM |
| N-[(2R,3R,4R,5S,6R)-5-{[(2S,3R,4S,5R,6R)-4-({[(2S,3R,4S,5R,6R)-2-{[(2R,3S,4R,5R,6R)-5-acetamido-4-hydroxy-2-(hydroxymethyl)-6-methoxyoxan-3-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]carbamothioyl}amino)-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-hydroxy-6-(hydroxymethyl)-2-methoxyoxan-3-yl]acetamide | KD | 58000 nM |
| N-[(2R,3R,4R,5S,6R)-4-hydroxy-6-(hydroxymethyl)-2-methoxy-5-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl]acetamide | KD | 70000 nM |
ChEMBL bioactivities
12 potent at pChembl≥5 of 32 total, top 12 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.77 | Kd | 1700 | nM | CHEMBL444662 |
| 5.70 | Kd | 2000 | nM | CHEMBL1253726 |
| 5.68 | Kd | 2100 | nM | CHEMBL503116 |
| 5.55 | Kd | 2800 | nM | CHEMBL1253217 |
| 5.47 | Kd | 3400 | nM | CHEMBL1253187 |
| 5.37 | Kd | 4300 | nM | CHEMBL457221 |
| 5.33 | Kd | 4700 | nM | CHEMBL1253745 |
| 5.30 | Kd | 5000 | nM | CHEMBL1253744 |
| 5.27 | Kd | 5400 | nM | CHEMBL1253742 |
| 5.12 | Kd | 7600 | nM | CHEMBL516152 |
| 5.10 | Kd | 8000 | nM | CHEMBL1253923 |
| 5.08 | Kd | 8300 | nM | CHEMBL1253743 |
PubChem BioAssay actives
24 with measured affinity, of 281 total; 12 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-[(2S,3R,4S,5R,6R)-2-[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-(naphthalene-2-carbonylamino)oxan-2-yl]sulfanyl-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]naphthalene-2-carboxamide | 412884: Binding affinity to galectin 7 at 0 degC by fluorescence polarization assay | kd | 1.7000 | uM |
| 1-[(2S,3R,4S,5R,6R)-2-[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-[4-(2-phenylethylcarbamoyl)triazol-1-yl]oxan-2-yl]sulfanyl-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]-N-(2-phenylethyl)triazole-4-carboxamide | 513982: Binding affinity to human galectin 7 at 4 degC by competitive fluorescence polarization assay | kd | 2.0000 | uM |
| N-[(2S,3R,4S,5R,6R)-2-[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-[(3-methoxybenzoyl)amino]oxan-2-yl]sulfanyl-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]-3-methoxybenzamide | 412884: Binding affinity to galectin 7 at 0 degC by fluorescence polarization assay | kd | 2.1000 | uM |
| N-[(2S,3R,4S,5R,6R)-2-[(2R,3R,4S,5R,6R)-4-[(3,5-dimethoxybenzoyl)amino]-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]-3,5-dimethoxybenzamide | 513982: Binding affinity to human galectin 7 at 4 degC by competitive fluorescence polarization assay | kd | 2.8000 | uM |
| 1-[(2S,3R,4S,5R,6R)-2-[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-[4-(prop-2-enylcarbamoyl)triazol-1-yl]oxan-2-yl]sulfanyl-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]-N-prop-2-enyltriazole-4-carboxamide | 513982: Binding affinity to human galectin 7 at 4 degC by competitive fluorescence polarization assay | kd | 3.4000 | uM |
| N-[(2S,3R,4S,5R,6R)-2-[(2S,3R,4S,5R,6R)-4-benzamido-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]benzamide | 412884: Binding affinity to galectin 7 at 0 degC by fluorescence polarization assay | kd | 4.3000 | uM |
| 1-[(2S,3R,4S,5R,6R)-2-[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-[4-(2-methoxyethylcarbamoyl)triazol-1-yl]oxan-2-yl]sulfanyl-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]-N-(2-methoxyethyl)triazole-4-carboxamide | 513982: Binding affinity to human galectin 7 at 4 degC by competitive fluorescence polarization assay | kd | 4.7000 | uM |
| 1-[(2S,3R,4S,5R,6R)-2-[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-[4-(2-hydroxypropylcarbamoyl)triazol-1-yl]oxan-2-yl]sulfanyl-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]-N-(2-hydroxypropyl)triazole-4-carboxamide | 513982: Binding affinity to human galectin 7 at 4 degC by competitive fluorescence polarization assay | kd | 5.0000 | uM |
| N-butyl-1-[(2S,3R,4S,5R,6R)-2-[(2S,3R,4S,5R,6R)-4-[4-(butylcarbamoyl)triazol-1-yl]-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]triazole-4-carboxamide | 513982: Binding affinity to human galectin 7 at 4 degC by competitive fluorescence polarization assay | kd | 5.4000 | uM |
| N-[(2S,3R,4S,5R,6R)-2-[(2R,3S,4R,5R,6R)-5-acetamido-4-hydroxy-2-(hydroxymethyl)-6-methoxyoxan-3-yl]oxy-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]naphthalene-1-carboxamide | 412884: Binding affinity to galectin 7 at 0 degC by fluorescence polarization assay | kd | 7.6000 | uM |
| 1-[(2S,3R,4S,5R,6R)-2-[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-[4-(methylcarbamoyl)triazol-1-yl]oxan-2-yl]sulfanyl-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]-N-methyltriazole-4-carboxamide | 513982: Binding affinity to human galectin 7 at 4 degC by competitive fluorescence polarization assay | kd | 8.0000 | uM |
| N-benzyl-1-[(2S,3R,4S,5R,6R)-2-[(2S,3R,4S,5R,6R)-4-[4-(benzylcarbamoyl)triazol-1-yl]-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]triazole-4-carboxamide | 513982: Binding affinity to human galectin 7 at 4 degC by competitive fluorescence polarization assay | kd | 8.3000 | uM |
CTD chemical–gene interactions
14 total (human), top 14 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, increases methylation | 3 |
| chloropicrin | decreases expression | 2 |
| dicrotophos | decreases expression | 1 |
| sodium arsenate | decreases expression, increases abundance | 1 |
| sodium arsenite | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| cylindrospermopsin | increases expression | 1 |
| entinostat | increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Arsenic | increases abundance, decreases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Estradiol | decreases expression, affects cotreatment | 1 |
| Smoke | increases abundance, increases expression | 1 |
| Aflatoxin B1 | increases expression | 1 |
ChEMBL screening assays
17 unique, capped per target: 17 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1013548 | Binding | Binding affinity to galectin 7 at 0 degC by fluorescence polarization assay | Galectin-inhibitory thiodigalactoside ester derivatives have antimigratory effects in cultured lung and prostate cancer cells. — J Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.