LHFPL2
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Also known as KIAA0206
Summary
LHFPL2 (LHFPL tetraspan subfamily member 2, HGNC:6588) is a protein-coding gene on chromosome 5q14.1, encoding LHFPL tetraspan subfamily member 2 protein (Q6ZUX7). Plays a role in female and male fertility.
This gene is a member of the lipoma HMGIC fusion partner (LHFP) gene family, which is a subset of the superfamily of tetraspan transmembrane protein encoding genes. Mutations in one LHFP-like gene result in deafness in humans and mice, and a second LHFP-like gene is fused to a high-mobility group gene in a translocation-associated lipoma. Alternatively spliced transcript variants have been found, but their biological validity has not been determined.
Source: NCBI Gene 10184 — RefSeq curated summary.
At a glance
- GWAS associations: 17
- Clinical variants (ClinVar): 39 total — 1 pathogenic
- MANE Select transcript:
NM_005779
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6588 |
| Approved symbol | LHFPL2 |
| Name | LHFPL tetraspan subfamily member 2 |
| Location | 5q14.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0206 |
| Ensembl gene | ENSG00000145685 |
| Ensembl biotype | protein_coding |
| OMIM | 609718 |
| Entrez | 10184 |
Gene structure
Transcript identifiers
Ensembl transcripts: 33 — 27 protein_coding, 6 protein_coding_CDS_not_defined
ENST00000380345, ENST00000502722, ENST00000503686, ENST00000510949, ENST00000512759, ENST00000514587, ENST00000515007, ENST00000515349, ENST00000872133, ENST00000872134, ENST00000872135, ENST00000872136, ENST00000872137, ENST00000872138, ENST00000872139, ENST00000872140, ENST00000872141, ENST00000930172, ENST00000930173, ENST00000930174, ENST00000930175, ENST00000930176, ENST00000930177, ENST00000930178, ENST00000930179, ENST00000930180, ENST00000930181, ENST00000969887, ENST00000969888, ENST00000969889, ENST00000969890, ENST00000969891, ENST00000969892
RefSeq mRNA: 1 — MANE Select: NM_005779
NM_005779
CCDS: CCDS4042
Canonical transcript exons
ENST00000380345 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001484617 | 78485230 | 78489153 |
| ENSE00001524086 | 78564813 | 78564871 |
| ENSE00001524087 | 78632264 | 78632368 |
| ENSE00001524089 | 78648499 | 78648772 |
| ENSE00003894561 | 78509784 | 78510398 |
Expression profiles
Bgee: expression breadth ubiquitous, 282 present calls, max score 97.09.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 27.8399 / max 452.7181, expressed in 1735 samples.
FANTOM5 promoters (18 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 62210 | 8.1562 | 669 |
| 62234 | 8.1019 | 1582 |
| 62235 | 6.3876 | 1590 |
| 62211 | 1.1652 | 342 |
| 62233 | 0.6586 | 410 |
| 62212 | 0.6494 | 228 |
| 62230 | 0.6468 | 145 |
| 62232 | 0.5767 | 344 |
| 62209 | 0.5039 | 153 |
| 62231 | 0.3665 | 149 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| vena cava | UBERON:0004087 | 97.09 | gold quality |
| calcaneal tendon | UBERON:0003701 | 95.56 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 95.14 | gold quality |
| synovial joint | UBERON:0002217 | 95.13 | gold quality |
| cartilage tissue | UBERON:0002418 | 95.01 | gold quality |
| olfactory bulb | UBERON:0002264 | 93.37 | gold quality |
| saphenous vein | UBERON:0007318 | 92.71 | gold quality |
| pericardium | UBERON:0002407 | 92.50 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 92.50 | gold quality |
| tendon | UBERON:0000043 | 92.02 | gold quality |
| duodenum | UBERON:0002114 | 91.22 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 90.97 | gold quality |
| decidua | UBERON:0002450 | 90.69 | gold quality |
| ileal mucosa | UBERON:0000331 | 90.42 | gold quality |
| mucosa of urinary bladder | UBERON:0001259 | 90.36 | gold quality |
| rectum | UBERON:0001052 | 89.28 | gold quality |
| islet of Langerhans | UBERON:0000006 | 89.26 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 88.93 | gold quality |
| gall bladder | UBERON:0002110 | 88.90 | gold quality |
| mammary duct | UBERON:0001765 | 88.42 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 88.24 | gold quality |
| visceral pleura | UBERON:0002401 | 88.01 | gold quality |
| parotid gland | UBERON:0001831 | 87.87 | gold quality |
| periodontal ligament | UBERON:0008266 | 87.77 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 87.67 | gold quality |
| minor salivary gland | UBERON:0001830 | 87.32 | gold quality |
| tibial artery | UBERON:0007610 | 87.28 | gold quality |
| popliteal artery | UBERON:0002250 | 87.27 | gold quality |
| right coronary artery | UBERON:0001625 | 87.22 | gold quality |
| mammary gland | UBERON:0001911 | 87.22 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-75367 | yes | 373.62 |
| E-HCAD-35 | yes | 32.46 |
| E-ANND-3 | yes | 16.04 |
| E-CURD-11 | no | 185.41 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
174 targeting LHFPL2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-196A-5P | 100.00 | 68.16 | 684 |
| HSA-MIR-196B-5P | 100.00 | 68.16 | 681 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-6891-5P | 99.98 | 66.53 | 1372 |
| HSA-MIR-3173-3P | 99.98 | 66.49 | 1217 |
Literature-anchored findings (GeneRIF, showing 3)
- The authors present an overview of the LHFP gene family in mouse and humans (PMID:15905332)
- Results report evidence for the existence of variants in LHFPL2 and TPM1 with low allele frequencies and large effects on age-at-onset of familial Parkinson’s disease. (PMID:27402877)
- LHFPL2 Serves as a Potential Biomarker for M2 Polarization of Macrophages in Renal Cell Carcinoma. (PMID:38928412)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lhfpl2a | ENSDARG00000009653 |
| danio_rerio | lhfpl2b | ENSDARG00000098153 |
| mus_musculus | Lhfpl2 | ENSMUSG00000045312 |
| rattus_norvegicus | Lhfpl2 | ENSRNOG00000011032 |
| drosophila_melanogaster | CG3770 | FBGN0035085 |
Paralogs (6): LHFPL4 (ENSG00000156959), LHFPL1 (ENSG00000182508), LHFPL6 (ENSG00000183722), LHFPL3 (ENSG00000187416), LHFPL5 (ENSG00000197753), LHFPL7 (ENSG00000206069)
Protein
Protein identifiers
LHFPL tetraspan subfamily member 2 protein — Q6ZUX7 (reviewed: Q6ZUX7)
Alternative names: Lipoma HMGIC fusion partner-like 2 protein
All UniProt accessions (1): Q6ZUX7
UniProt curated annotations — full annotation on UniProt →
Function. Plays a role in female and male fertility. Involved in distal reproductive tract development.
Subcellular location. Membrane.
Tissue specificity. Expressed in all tissues and cell lines examined except brain and peripheral blood leukocytes.
Similarity. Belongs to the LHFP family.
RefSeq proteins (1): NP_005770* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR019372 | LHFPL | Family |
Pfam: PF10242
UniProt features (7 total): transmembrane region 4, chain 1, sequence variant 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6ZUX7-F1 | 83.55 | 0.44 |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-114608 | Platelet degranulation |
| R-HSA-109582 | Hemostasis |
| R-HSA-76002 | Platelet activation, signaling and aggregation |
| R-HSA-76005 | Response to elevated platelet cytosolic Ca2+ |
MSigDB gene sets: 294 (showing top):
VERHAAK_AML_WITH_NPM1_MUTATED_DN, GOBP_SINGLE_FERTILIZATION, GOBP_POSITIVE_REGULATION_OF_REPRODUCTIVE_PROCESS, GOCC_SECRETORY_GRANULE, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, GCANCTGNY_MYOD_Q6, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, CAGCTG_AP4_Q5, BILD_HRAS_ONCOGENIC_SIGNATURE, ONKEN_UVEAL_MELANOMA_UP, RUTELLA_RESPONSE_TO_CSF2RB_AND_IL4_UP, DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN, GOBP_REGULATION_OF_REPRODUCTIVE_PROCESS, GENTILE_UV_HIGH_DOSE_DN, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5
GO Biological Process (4): single fertilization (GO:0007338), development of primary female sexual characteristics (GO:0046545), development of primary male sexual characteristics (GO:0046546), positive regulation of fertilization (GO:1905516)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (3): plasma membrane (GO:0005886), membrane (GO:0016020), platelet alpha granule membrane (GO:0031092)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Response to elevated platelet cytosolic Ca2+ | 1 |
| Hemostasis | 1 |
| Platelet activation, signaling and aggregation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| fertilization | 2 |
| development of primary sexual characteristics | 2 |
| female sex differentiation | 1 |
| male sex differentiation | 1 |
| regulation of fertilization | 1 |
| positive regulation of reproductive process | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
| secretory granule membrane | 1 |
| platelet alpha granule | 1 |
Protein interactions and networks
STRING
546 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LHFPL2 | RNF182 | Q8N6D2 | 477 |
| LHFPL2 | TBC1D30 | Q9Y2I9 | 477 |
| LHFPL2 | TMEM86A | Q8N2M4 | 463 |
| LHFPL2 | F5H6H0 | F5H6H0 | 463 |
| LHFPL2 | OCIAD2 | Q56VL3 | 457 |
| LHFPL2 | RASSF2 | P50749 | 437 |
| LHFPL2 | NRIP3 | Q9NQ35 | 432 |
| LHFPL2 | DUSP3 | P51452 | 424 |
| LHFPL2 | ARHGAP12 | Q8IWW6 | 415 |
| LHFPL2 | SDR39U1 | Q9NRG7 | 412 |
| LHFPL2 | TMEM51 | Q9NW97 | 392 |
| LHFPL2 | SPATA31E1 | Q6ZUB1 | 391 |
| LHFPL2 | TRMT2A | Q8IZ69 | 380 |
| LHFPL2 | LZTS2 | Q9BRK4 | 373 |
| LHFPL2 | SLC39A6 | Q13433 | 357 |
IntAct
33 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TMEM147 | LHFPL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SNORC | LHFPL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GJB1 | LHFPL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LHFPL2 | FXYD6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LHFPL2 | GPR152 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMEM128 | LHFPL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GJA5 | LHFPL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SCARF1 | LHFPL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GAST | LHFPL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| OLFM4 | LHFPL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LHFPL2 | TMEM147 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LHFPL2 | SRC | psi-mi:“MI:0914”(association) | 0.350 |
| LHFPL2 | IFNGR1 | psi-mi:“MI:0914”(association) | 0.350 |
| LHFPL2 | GJB1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| FXYD6 | LHFPL2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| LHFPL2 | GPR152 | psi-mi:“MI:0915”(physical association) | 0.000 |
| TMEM128 | LHFPL2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| LHFPL2 | GJA5 | psi-mi:“MI:0915”(physical association) | 0.000 |
| SCARF1 | LHFPL2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| GAST | LHFPL2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| OLFM4 | LHFPL2 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (23): LHFPL2 (Two-hybrid), LHFPL2 (Two-hybrid), LHFPL2 (Two-hybrid), LHFPL2 (Two-hybrid), LHFPL2 (Two-hybrid), GJB1 (Two-hybrid), GPR152 (Two-hybrid), C2orf82 (Two-hybrid), GAST (Two-hybrid), GJA5 (Two-hybrid), PPP2R5D (Affinity Capture-MS), VMA21 (Affinity Capture-MS), THAP11 (Affinity Capture-MS), ATP2B4 (Affinity Capture-MS), VAMP3 (Affinity Capture-MS)
ESM2 similar proteins: A0A1D5NY17, A4IF75, B2RVY9, B3SHH9, F6V1J6, O42281, O70578, P19518, P97707, Q06432, Q08CE6, Q08DE1, Q0D289, Q0V9E0, Q14714, Q2MJQ7, Q4R4Z3, Q4V922, Q5CZV0, Q5PRC1, Q5RDV7, Q5XGU1, Q62147, Q66IV3, Q68FV0, Q6AZD1, Q6P0C6, Q6R5J2, Q6ZP80, Q6ZUX7, Q7ZZL8, Q86WI0, Q8BGA2, Q8NBL3, Q8VHW3, Q8VHW4, Q8VHW7, Q8VHW8, Q91Y55, Q925N4
Diamond homologs: Q5BJS2, Q5PRC1, Q6ICI0, Q6P0C6, Q6ZUX7, Q8BGA2, Q8BM86, Q9Y693
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
39 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 32 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1073286 | NC_000005.9:g.(?77385207)(78135259_?)del | Pathogenic |
SpliceAI
3109 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:78509778:TCTTA:T | donor_loss | 1.0000 |
| 5:78509779:CTTAC:C | donor_loss | 1.0000 |
| 5:78509780:TTAC:T | donor_loss | 1.0000 |
| 5:78509781:TACC:T | donor_loss | 1.0000 |
| 5:78509783:C:CA | donor_loss | 1.0000 |
| 5:78564809:TTAC:T | donor_loss | 1.0000 |
| 5:78564810:TAC:T | donor_loss | 1.0000 |
| 5:78564811:A:AC | donor_gain | 1.0000 |
| 5:78564811:ACCT:A | donor_loss | 1.0000 |
| 5:78564812:C:CC | donor_gain | 1.0000 |
| 5:78564812:CCT:C | donor_gain | 1.0000 |
| 5:78564867:GCCAC:G | acceptor_gain | 1.0000 |
| 5:78564868:CCAC:C | acceptor_gain | 1.0000 |
| 5:78564868:CCACC:C | acceptor_gain | 1.0000 |
| 5:78564869:CAC:C | acceptor_gain | 1.0000 |
| 5:78564869:CACC:C | acceptor_gain | 1.0000 |
| 5:78564870:AC:A | acceptor_gain | 1.0000 |
| 5:78564871:CC:C | acceptor_gain | 1.0000 |
| 5:78564872:C:CC | acceptor_gain | 1.0000 |
| 5:78564881:C:CT | acceptor_gain | 1.0000 |
| 5:78489149:TAGAC:T | acceptor_gain | 0.9900 |
| 5:78489151:GAC:G | acceptor_gain | 0.9900 |
| 5:78489154:C:A | acceptor_loss | 0.9900 |
| 5:78489154:C:CC | acceptor_gain | 0.9900 |
| 5:78489155:T:A | acceptor_loss | 0.9900 |
| 5:78514546:AGATC:A | donor_gain | 0.9900 |
| 5:78528988:TTAAA:T | donor_gain | 0.9900 |
| 5:78564811:AC:A | donor_gain | 0.9900 |
| 5:78564812:CC:C | donor_gain | 0.9900 |
| 5:78564812:CCTA:C | donor_gain | 0.9900 |
AlphaMissense
1492 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:78489136:C:G | G150R | 1.000 |
| 5:78510163:A:C | S17R | 1.000 |
| 5:78510163:A:T | S17R | 1.000 |
| 5:78510165:T:G | S17R | 1.000 |
| 5:78510177:A:G | W13R | 1.000 |
| 5:78510177:A:T | W13R | 1.000 |
| 5:78488988:G:T | A199D | 0.999 |
| 5:78489013:C:G | G191R | 0.999 |
| 5:78489047:G:C | C179W | 0.999 |
| 5:78489084:C:T | C167Y | 0.999 |
| 5:78489112:A:G | W158R | 0.999 |
| 5:78489112:A:T | W158R | 0.999 |
| 5:78489135:C:T | G150D | 0.999 |
| 5:78509784:C:G | G144R | 0.999 |
| 5:78509804:C:T | G137E | 0.999 |
| 5:78509815:G:C | F133L | 0.999 |
| 5:78509815:G:T | F133L | 0.999 |
| 5:78509817:A:G | F133L | 0.999 |
| 5:78509895:C:G | G107R | 0.999 |
| 5:78509895:C:T | G107R | 0.999 |
| 5:78510115:C:A | W33C | 0.999 |
| 5:78510115:C:G | W33C | 0.999 |
| 5:78510117:A:G | W33R | 0.999 |
| 5:78510117:A:T | W33R | 0.999 |
| 5:78510200:A:T | I5N | 0.999 |
| 5:78488962:C:G | A208P | 0.998 |
| 5:78488971:C:G | A205P | 0.998 |
| 5:78488990:A:C | C198W | 0.998 |
| 5:78488991:C:T | C198Y | 0.998 |
| 5:78488992:A:G | C198R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000009820 (5:78616220 G>A), RS1000053630 (5:78583606 T>C), RS1000058102 (5:78609425 T>C,G), RS1000062662 (5:78521562 A>G), RS1000110040 (5:78609648 G>A), RS1000115291 (5:78649195 A>G), RS1000180171 (5:78509327 G>T), RS1000198240 (5:78555931 T>A,C), RS1000202543 (5:78621008 C>T), RS1000216964 (5:78637737 G>A), RS1000271696 (5:78556218 G>A), RS1000274192 (5:78603753 C>A), RS1000287899 (5:78510362 A>C,G), RS1000304059 (5:78527100 T>C), RS1000310939 (5:78555435 T>A)
Disease associations
OMIM: gene MIM:609718 | disease phenotypes: MIM:253200
GenCC curated gene-disease
Mondo (1): mucopolysaccharidosis type 6 (MONDO:0009661)
Orphanet (1): Mucopolysaccharidosis type 6 (Orphanet:583)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
17 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000461_21 | Hippocampal atrophy | 2.000000e-06 |
| GCST002670_5 | Blood and toenail selenium levels | 5.000000e-14 |
| GCST003652_1 | Parkinson’s disease (familial, age at onset) | 1.000000e-11 |
| GCST004278_21 | Pulse pressure | 7.000000e-11 |
| GCST004603_3 | Platelet count | 7.000000e-18 |
| GCST004607_233 | Plateletcrit | 5.000000e-22 |
| GCST004616_9 | Platelet distribution width | 2.000000e-15 |
| GCST006976_41 | Macular thickness | 6.000000e-16 |
| GCST007096_43 | Pulse pressure | 3.000000e-09 |
| GCST007099_154 | Systolic blood pressure | 2.000000e-06 |
| GCST007267_202 | Systolic blood pressure | 1.000000e-13 |
| GCST007269_235 | Pulse pressure | 6.000000e-13 |
| GCST008362_105 | Birth weight | 3.000000e-08 |
| GCST009391_178 | Metabolite levels | 5.000000e-06 |
| GCST90002400_690 | Plateletcrit | 2.000000e-15 |
| GCST90002401_166 | Platelet distribution width | 9.000000e-50 |
| GCST90002402_775 | Platelet count | 2.000000e-34 |
EFO canonical traits (9, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005039 | hippocampal atrophy |
| EFO:0004847 | age at onset |
| EFO:0005763 | pulse pressure measurement |
| EFO:0004309 | platelet count |
| EFO:0007985 | platelet crit |
| EFO:0007984 | platelet component distribution width |
| EFO:0006335 | systolic blood pressure |
| EFO:0004344 | birth weight |
| EFO:0010476 | dimethylglycine measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009087 | Mucopolysaccharidosis VI | C16.320.565.202.715.670; C16.320.565.595.600.670; C17.300.550.575.670; C18.452.648.202.715.670; C18.452.648.595.600.670 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
40 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, increases methylation, increases expression | 5 |
| Benzo(a)pyrene | affects methylation, decreases expression | 3 |
| Cyclosporine | increases expression | 2 |
| Particulate Matter | affects cotreatment, increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| 2-bromopalmitate | decreases reaction, increases abundance, increases palmitoylation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| perfluoro-n-nonanoic acid | increases expression | 1 |
| monomethylarsonous acid | increases expression | 1 |
| ICG 001 | increases expression | 1 |
| bisphenol S | affects cotreatment, increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Acetaminophen | increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Ethanol | affects cotreatment, increases abundance, increases expression | 1 |
| Atrazine | decreases expression | 1 |
| Benzene | increases expression | 1 |
| Cadmium | increases abundance, increases palmitoylation, decreases reaction | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
| Estradiol | affects cotreatment, increases expression | 1 |
| Gasoline | affects cotreatment, increases abundance, increases expression | 1 |
| Indomethacin | affects cotreatment, increases expression | 1 |
| N-Nitrosopyrrolidine | increases expression | 1 |
| Phenobarbital | affects expression | 1 |
| Piroxicam | increases expression | 1 |
| Polycyclic Aromatic Hydrocarbons | affects cotreatment, increases abundance, increases expression | 1 |
| Testosterone | affects cotreatment, increases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
Clinical trials (associated diseases)
15 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00299000 | PHASE4 | COMPLETED | A Phase 4 Two Dose Level Study of Naglazyme(TM) (Galsulfase) in Infants With MPS VI |
| NCT00668564 | PHASE2 | TERMINATED | Hematopoietic Stem Cell Transplantation (HCT) for Inborn Errors of Metabolism |
| NCT01043640 | PHASE2 | COMPLETED | Allogeneic Bone Marrow Transplant for Inherited Metabolic Disorders |
| NCT02171104 | PHASE2 | ACTIVE_NOT_RECRUITING | MT2013-31: Allo HCT for Metabolic Disorders and Severe Osteopetrosis |
| NCT03632213 | PHASE2 | UNKNOWN | Evaluation of Losartan on Cardiovascular Disease in Patients With Mucopolysaccharidoses IV A and VI |
| NCT04532047 | PHASE1 | RECRUITING | PEARL (PrEnAtal Enzyme Replacement Therapy for Lysosomal Storage Disorders) |
| NCT02437253 | PHASE1/PHASE2 | COMPLETED | Effects of Adalimumab in Mucopolysaccharidosis Types I, II and VI |
| NCT03173521 | PHASE1/PHASE2 | COMPLETED | Gene Therapy in Patients With Mucopolysaccharidosis Disease |
| NCT05845749 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Safety and Efficacy of Voxzogo for Growth Deficits in MPS IVA and VI |
| NCT01387854 | Not specified | COMPLETED | Observational Study of Patients With Mucopolysaccharidosis (MPS) VI Who Previously Participated in ASB-00-02 |
| NCT01870375 | Not specified | COMPLETED | Longitudinal Studies of Brain Structure and Function in MPS Disorders |
| NCT01938014 | Not specified | COMPLETED | Lysosomal Storage Disease: Health, Development, and Functional Outcome Surveillance in Preschool Children |
| NCT01961518 | Not specified | COMPLETED | Screening an Orthopedic Population for Mildly-affected Individuals With Morquio Syndrome A and Maroteaux-Lamy Syndrome |
| NCT02156674 | Not specified | TERMINATED | Naglazyme After Allo Transplant for Maroteaux-Lamy Syndrome |
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): mucopolysaccharidosis type 6