LIG4
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Summary
LIG4 (DNA ligase 4, HGNC:6601) is a protein-coding gene on chromosome 13q33.3, encoding DNA ligase 4 (P49917). DNA ligase involved in DNA non-homologous end joining (NHEJ); required for double-strand break (DSB) repair and V(D)J recombination.
The protein encoded by this gene is a DNA ligase that joins single-strand breaks in a double-stranded polydeoxynucleotide in an ATP-dependent reaction. This protein is essential for V(D)J recombination and DNA double-strand break (DSB) repair through nonhomologous end joining (NHEJ). This protein forms a complex with the X-ray repair cross complementing protein 4 (XRCC4), and further interacts with the DNA-dependent protein kinase (DNA-PK). Both XRCC4 and DNA-PK are known to be required for NHEJ. The crystal structure of the complex formed by this protein and XRCC4 has been resolved. Defects in this gene are the cause of LIG4 syndrome. Alternatively spliced transcript variants encoding the same protein have been observed.
Source: NCBI Gene 3981 — RefSeq curated summary.
At a glance
- Gene–disease (curated): DNA ligase IV deficiency (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 2
- Clinical variants (ClinVar): 809 total — 87 pathogenic, 16 likely-pathogenic
- Phenotypes (HPO): 164
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_206937
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6601 |
| Approved symbol | LIG4 |
| Name | DNA ligase 4 |
| Location | 13q33.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000174405 |
| Ensembl biotype | protein_coding |
| OMIM | 601837 |
| Entrez | 3981 |
Gene structure
Transcript identifiers
Ensembl transcripts: 28 — 28 protein_coding
ENST00000405925, ENST00000442234, ENST00000611712, ENST00000614526, ENST00000685338, ENST00000686095, ENST00000686204, ENST00000686913, ENST00000686926, ENST00000687164, ENST00000687822, ENST00000688396, ENST00000688455, ENST00000688529, ENST00000688595, ENST00000689762, ENST00000690127, ENST00000692222, ENST00000693040, ENST00000857200, ENST00000857201, ENST00000857202, ENST00000857203, ENST00000935507, ENST00000935508, ENST00000935509, ENST00000935510, ENST00000958174
RefSeq mRNA: 12 — MANE Select: NM_206937
NM_001098268, NM_001330595, NM_001352598, NM_001352599, NM_001352600, NM_001352601, NM_001352602, NM_001352603, NM_001352604, NM_001379095, NM_002312, NM_206937
CCDS: CCDS81779, CCDS9508
Canonical transcript exons
ENST00000442234 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001192809 | 108207442 | 108211296 |
| ENSE00001766472 | 108215484 | 108215536 |
| ENSE00003717287 | 108214538 | 108214610 |
Expression profiles
Bgee: expression breadth ubiquitous, 275 present calls, max score 88.49.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 7.1105 / max 217.0966, expressed in 1689 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 138172 | 4.3148 | 1439 |
| 138173 | 2.6036 | 1267 |
| 138171 | 0.1604 | 63 |
| 138170 | 0.0317 | 15 |
Top tissues by expression
293 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| endothelial cell | CL:0000115 | 88.49 | silver quality |
| oocyte | CL:0000023 | 88.04 | gold quality |
| secondary oocyte | CL:0000655 | 87.83 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 87.80 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 86.74 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 86.25 | gold quality |
| islet of Langerhans | UBERON:0000006 | 86.20 | gold quality |
| jejunal mucosa | UBERON:0000399 | 84.50 | gold quality |
| primary visual cortex | UBERON:0002436 | 83.69 | gold quality |
| lower lobe of lung | UBERON:0008949 | 83.40 | gold quality |
| right lobe of liver | UBERON:0001114 | 83.34 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 82.83 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 82.79 | gold quality |
| right adrenal gland | UBERON:0001233 | 82.78 | gold quality |
| seminal vesicle | UBERON:0000998 | 82.53 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 82.33 | gold quality |
| prefrontal cortex | UBERON:0000451 | 82.04 | gold quality |
| left adrenal gland | UBERON:0001234 | 81.72 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 81.50 | gold quality |
| right frontal lobe | UBERON:0002810 | 81.49 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 81.11 | gold quality |
| adenohypophysis | UBERON:0002196 | 81.10 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 80.96 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 80.91 | gold quality |
| spinal cord | UBERON:0002240 | 80.89 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 80.83 | gold quality |
| adrenal cortex | UBERON:0001235 | 80.75 | gold quality |
| adrenal gland | UBERON:0002369 | 80.67 | gold quality |
| monocyte | CL:0000576 | 80.59 | gold quality |
| cerebellar cortex | UBERON:0002129 | 80.55 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-7303 | no | 339.31 |
| E-ANND-3 | no | 3.73 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F1, GABPA
miRNA regulators (miRDB)
63 targeting LIG4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-8063 | 99.91 | 69.76 | 3146 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-4671-3P | 99.88 | 72.46 | 1045 |
| HSA-MIR-3140-3P | 99.88 | 68.47 | 2069 |
| HSA-MIR-576-5P | 99.84 | 70.46 | 2582 |
| HSA-MIR-6715A-3P | 99.83 | 68.05 | 1473 |
| HSA-MIR-548AZ-5P | 99.83 | 69.94 | 3230 |
| HSA-MIR-548T-5P | 99.83 | 69.91 | 3220 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- crystal structure of an Xrcc4-DNA ligase IV complex (PMID:11702069)
- mutations identified in patients exhibiting developmental delay and immunodeficiency (PMID:11779494)
- Association of DNA polymerase mu (pol mu) with Ku and ligase IV: role for pol mu in end-joining double-strand break repair. (PMID:12077346)
- Genetic variants of NHEJ DNA ligase IV can affect the risk of developing multiple myeloma, a tumour characterised by aberrant class switch recombination (PMID:12471202)
- Coordinated assembly of Ku and p460 subunits of the DNA-dependent protein kinase on DNA ends is necessary for XRCC4-ligase IV recruitment (PMID:12547193)
- DNA ligase IV has a role in binding with a subunit of the condensin complex (PMID:12589063)
- stability is regulated by multiple factors, including interaction with XRCC4, phosphorylation status, and possibly Lig4 conformation (PMID:15194694)
- Examination of recombinant mutant DNA ligase IV shows that the severity of LIG4 syndrome correlates with the level of residual ligase activity. (PMID:15333585)
- interactions between BLM and DNA ligase IV play a role in DNA repair in human cells (PMID:15509577)
- DNAPK was physically required for the mobilization of the XRCC4-ligase IV complex, and for stable recruitment of XRCC4; phosphorylation of either H2AX or XRCC4 was unnecessary for DNAPK or XRCC4-ligase IV recruitment (PMID:15520013)
- LIG4 mutations can result in either a developmental defect with immunological abnormalities or a severe combined immunodeficiency picture with normal development. (PMID:16357942)
- We confirmed that DNA ligase IV is unstable in the absence of XRCC4, with a half-life of approximately 30-90 min. (PMID:16412978)
- Cernunnos physically interacts with the XRCC4 x DNA-ligase IV complex (PMID:16571728)
- residues 470-476 function as part of a molecular pincer that maintains the DNA in a conformation that is required for ligation (PMID:16735143)
- DNA-PK kinase activity results in disassembly of the Ku/DNA ligase IV/Xrcc4 complex (PMID:17241822)
- XRCC4:DNA ligase IV can ligate incompatible DNA ends and can ligate across gaps. (PMID:17290226)
- Results describe the activity requirements for DNA ligases III and IV in the pathways of non-homologous DNA end joining. (PMID:17492771)
- DNA ligase IV gene polymorphisms might have a role in acute lymphoblastic leukemia in children (PMID:17541392)
- DNA Ligase IV/XRCC4 recruitment by DNA-PK to DNA double-strand breaks prevents the formation of long ssDNA ends at double-strand breaks during the S phase. (PMID:17963495)
- Haplotype analysis revealed an association of glioma risk with genetic variants in LIG4 block 1 (global P=0.011), and XRCC4 blocks 2 and 4 (both global P<0.0001). (PMID:18165945)
- DNA ligase IV is not required in microhomology-mediated end joining but facilitates Ku-dependent DNA nonhomologous end-joining. (PMID:18440984)
- DNA damage left unrepaired by DNA-ligase IV or DNA-PK might be the initiator for caspase activation by doxorubicin in cancer cells (PMID:18508926)
- Omenn syndrome is associated with mutations in DNA ligase IV. (PMID:18845326)
- In cells infected with E1B 55k-deficient adenovirus, ligase IV could not be found in XRCC4-containing complexes and was observed in a novel ligase IV/E4 34k/Cul5/Elongin BC complex. (PMID:18952251)
- DNA-PK regulates the dysbindin-1 isoforms A and B by phosphorylation in nucleus (PMID:19142223)
- The high-resolution crystal structure of human XRCC4 bound to the carboxy-terminal tandem BRCT repeat of DNA ligase IV, is reported. (PMID:19332554)
- study reports 2 siblings with LIG4 syndrome; mutational analysis of the family revealed a novel sequence variant; homozygous trinucleotide deletion, 1762delAAG, was detected in the brother, resulting in deletion of a lysine at amino acid position 588 (PMID:19418549)
- role of NHEJ enzyme Ligase IV in the pathogenesis of MDS (PMID:19727724)
- provide a first sight of the structural organization of the Lig4-Xrcc4 complex, which suggests that the BRCT domains could provide the link of the ligase to Xrcc4 while permitting some movements of the catalytic domains of Lig4. (PMID:19837014)
- Polymorphisms in the LIG4, BTBD2, HMGA2, and RTEL1 genes, which are involved in the double-strand break repair pathway, are associated with glioblastoma multiforme survival. (PMID:20368557)
- in the Chinese population, LIG4 Ile658Val has only a slight impact on the risk of developing cervical carcinoma (PMID:20400235)
- these results suggest that some variants in XRCC4, LIG4 and Ku80 genes can contribute to thyroid cancer susceptibility (PMID:20811692)
- The current results indicated that NHEJ genetic polymorphisms, particularly LIG4 rs1805388, may modulate the risk of RP in patients with NSCLC who receive definitive radio(chemo)therapy (PMID:21717429)
- polymorphisms in LIG4 do not contribute to cancer risk in a population of Lynch syndrome patients with colorectal cancer (PMID:21974800)
- XRCC4 modulates the dynamic interaction of the Ligase IV/XRCC4 complex with the NHEJ machinery at double-stranded DNA breaks (PMID:21982441)
- The alpha2 helix in the Lig4 BRCT-1 domain is required for adenovirus-mediated degradation of Lig4. (PMID:22534089)
- The flexibility of the DNA ligase IV catalytic region is limited in a manner that affects the formation of the LigIV/XRCC4/XLF-Cernunnos complex. (PMID:22658747)
- No association between LIG4 gene polymorphisms (rs1805386 T>C, rs1805389 C>T, rs1805388 C>T and rs2232641 A>G) and breast cancer risk. (PMID:22994770)
- Structural basis of DNA ligase IV-Artemis interaction in nonhomologous end-joining. (PMID:23219551)
- DNA Ligase IV is differentially required for certain chromosome fusion events induced by telomere dysfunction. (PMID:23275564)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lig4 | ENSDARG00000060620 |
| mus_musculus | Lig4 | ENSMUSG00000049717 |
| rattus_norvegicus | Lig4 | ENSRNOG00000014605 |
| drosophila_melanogaster | DNAlig4 | FBGN0030506 |
| caenorhabditis_elegans | WBGENE00002986 |
Paralogs (2): LIG3 (ENSG00000005156), LIG1 (ENSG00000105486)
Protein
Protein identifiers
DNA ligase 4 — P49917 (reviewed: P49917)
Alternative names: DNA ligase IV, Polydeoxyribonucleotide synthase [ATP] 4
All UniProt accessions (2): A0A0C4DGV9, P49917
UniProt curated annotations — full annotation on UniProt →
Function. DNA ligase involved in DNA non-homologous end joining (NHEJ); required for double-strand break (DSB) repair and V(D)J recombination. Catalyzes the NHEJ ligation step of the broken DNA during DSB repair by resealing the DNA breaks after the gap filling is completed. Joins single-strand breaks in a double-stranded polydeoxynucleotide in an ATP-dependent reaction. LIG4 is mechanistically flexible: it can ligate nicks as well as compatible DNA overhangs alone, while in the presence of XRCC4, it can ligate ends with 2-nucleotides (nt) microhomology and 1-nt gaps. Forms a subcomplex with XRCC4; the LIG4-XRCC4 subcomplex is responsible for the NHEJ ligation step and XRCC4 enhances the joining activity of LIG4. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. LIG4 regulates nuclear localization of XRCC4.
Subunit / interactions. Interacts with XRCC4; the LIG4-XRCC4 subcomplex has a 1:2 stoichiometry and XRCC4 is required for LIG4 stability. Component of the core long-range non-homologous end joining (NHEJ) complex (also named DNA-PK complex) composed of PRKDC, LIG4, XRCC4, XRCC6/Ku70, XRCC5/Ku86 and NHEJ1/XLF. Additional component of the NHEJ complex includes PAXX. Following autophosphorylation, PRKDC dissociates from DNA, leading to formation of the short-range NHEJ complex, composed of LIG4, XRCC4, XRCC6/Ku70, XRCC5/Ku86 and NHEJ1/XLF. Interacts with DCLRE1C; the interaction is direct. Interacts with APLF.
Subcellular location. Nucleus.
Tissue specificity. Testis, thymus, prostate and heart.
Disease relevance. LIG4 syndrome (LIG4S) [MIM:606593] Characterized by immunodeficiency and developmental and growth delay. Patients display unusual facial features, microcephaly, growth and/or developmental delay, pancytopenia, and various skin abnormalities. The disease is caused by variants affecting the gene represented in this entry. Severe combined immunodeficiency autosomal recessive T-cell-negative/B-cell-negative/NK-cell-positive with sensitivity to ionizing radiation (RSSCID) [MIM:602450] A form of severe combined immunodeficiency, a genetically and clinically heterogeneous group of rare congenital disorders characterized by impairment of both humoral and cell-mediated immunity, leukopenia, and low or absent antibody levels. Patients present in infancy with recurrent, persistent infections by opportunistic organisms. The common characteristic of all types of SCID is absence of T-cell-mediated cellular immunity due to a defect in T-cell development. Individuals affected by RS-SCID show defects in the DNA repair machinery necessary for coding joint formation and the completion of V(D)J recombination. A subset of cells from such patients show increased radiosensitivity. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Can also use manganese, calcium, nickel and cobalt ions in the ligation reaction.
Similarity. Belongs to the ATP-dependent DNA ligase family.
RefSeq proteins (12): NP_001091738, NP_001317524, NP_001339527, NP_001339528, NP_001339529, NP_001339530, NP_001339531, NP_001339532, NP_001339533, NP_001366024, NP_002303, NP_996820* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000977 | DNA_ligase_ATP-dep | Family |
| IPR001357 | BRCT_dom | Domain |
| IPR012308 | DNA_ligase_ATP-dep_N | Domain |
| IPR012309 | DNA_ligase_ATP-dep_C | Domain |
| IPR012310 | DNA_ligase_ATP-dep_cent | Domain |
| IPR012340 | NA-bd_OB-fold | Homologous_superfamily |
| IPR016059 | DNA_ligase_ATP-dep_CS | Conserved_site |
| IPR021536 | DNA_ligase_IV_dom | Domain |
| IPR029710 | LIG4 | Family |
| IPR036420 | BRCT_dom_sf | Homologous_superfamily |
| IPR036599 | DNA_ligase_N_sf | Homologous_superfamily |
| IPR044125 | Adenylation_DNA_ligase_IV | Domain |
Pfam: PF00533, PF01068, PF04675, PF04679, PF11411
Enzyme classification (BRENDA):
- EC 6.5.1.1 — DNA ligase (ATP) (BRENDA: 129 organisms, 228 substrates, 149 inhibitors, 70 Km, 29 kcat entries)
Substrate kinetics (BRENDA)
21 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | — | 33 |
| DNA | — | 7 |
| DATP | 0.0016–0.004 | 3 |
| NICKED DNA | — | 2 |
| (2E,6E)-FARNESYL TRIPHOSPHATE | 0.15 | 1 |
| (DEOXYRIBONUCLEOTIDE)20 | — | 1 |
| (DT)20 | 0.0001 | 1 |
| (NICKED DOUBLE-STRANDED DNA)N | 0.0001 | 1 |
| (SINGLE-STRANDED DNA SPLINTED BY RNA)M | — | 1 |
| CLODRONATE | 0.08 | 1 |
| DIMETHYLALLYL DIPHOSPHATE | 4 | 1 |
| ETIDRONATE | 0.73 | 1 |
| FARNESYL DIPHOSPHATE | 0.05 | 1 |
| GERANYL DIPHOSPHATE | 0.21 | 1 |
| GERANYL TRIPHOSPHATE | 0.31 | 1 |
UniProt features (124 total): helix 43, strand 37, binding site 14, sequence variant 14, turn 10, domain 2, chain 1, region of interest 1, sequence conflict 1, active site 1
Structure
Experimental structures (PDB)
31 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4HTP | X-RAY DIFFRACTION | 2.25 |
| 1IK9 | X-RAY DIFFRACTION | 2.3 |
| 3II6 | X-RAY DIFFRACTION | 2.4 |
| 3W1B | X-RAY DIFFRACTION | 2.4 |
| 6BKG | X-RAY DIFFRACTION | 2.4 |
| 3W1G | X-RAY DIFFRACTION | 2.55 |
| 7D9Y | X-RAY DIFFRACTION | 2.76 |
| 9CQ3 | ELECTRON MICROSCOPY | 2.8 |
| 9N81 | ELECTRON MICROSCOPY | 2.8 |
| 4HTO | X-RAY DIFFRACTION | 2.81 |
| 3W5O | X-RAY DIFFRACTION | 2.84 |
| 7D9K | X-RAY DIFFRACTION | 2.9 |
| 3VNN | X-RAY DIFFRACTION | 2.9 |
| 9CQ6 | ELECTRON MICROSCOPY | 3.1 |
| 9N83 | ELECTRON MICROSCOPY | 3.1 |
| 6BKF | X-RAY DIFFRACTION | 3.25 |
| 9N82 | ELECTRON MICROSCOPY | 3.3 |
| 9CQC | ELECTRON MICROSCOPY | 3.4 |
| 9IAX | ELECTRON MICROSCOPY | 3.97 |
| 7NFC | ELECTRON MICROSCOPY | 4.14 |
| 9GD7 | ELECTRON MICROSCOPY | 4.25 |
| 7NFE | ELECTRON MICROSCOPY | 4.29 |
| 8EZA | ELECTRON MICROSCOPY | 4.39 |
| 8BHV | ELECTRON MICROSCOPY | 4.51 |
| 8BH3 | ELECTRON MICROSCOPY | 4.55 |
| 7LT3 | ELECTRON MICROSCOPY | 4.6 |
| 8BHY | ELECTRON MICROSCOPY | 5.33 |
| 8BOT | ELECTRON MICROSCOPY | 7.76 |
| 7LSY | ELECTRON MICROSCOPY | 8.4 |
| 8EZB | ELECTRON MICROSCOPY | 8.9 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P49917-F1 | 88.44 | 0.64 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 273 (n6-amp-lysine intermediate)
Ligand- & substrate-binding residues (14): 331; 331; 345; 367; 427; 427; 432; 449; 451; 271; 272; 273 …
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-164843 | 2-LTR circle formation |
| R-HSA-5693571 | Nonhomologous End-Joining (NHEJ) |
MSigDB gene sets: 610 (showing top):
GOBP_CHROMOSOME_ORGANIZATION, GOBP_HEMATOPOIETIC_PROGENITOR_CELL_DIFFERENTIATION, GOBP_NEGATIVE_REGULATION_OF_NEURON_APOPTOTIC_PROCESS, RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOBP_RESPONSE_TO_IONIZING_RADIATION, GOBP_SOMATIC_STEM_CELL_POPULATION_MAINTENANCE, REACTOME_INTEGRATION_OF_PROVIRUS, GOBP_B_CELL_ACTIVATION, ENK_UV_RESPONSE_KERATINOCYTE_UP, GOBP_POSITIVE_REGULATION_OF_FIBROBLAST_PROLIFERATION, GOBP_NEUROGENESIS, GOBP_REGULATION_OF_NERVOUS_SYSTEM_DEVELOPMENT, GOBP_POSITIVE_REGULATION_OF_ORGANELLE_ORGANIZATION, KAUFFMANN_DNA_REPAIR_GENES
GO Biological Process (37): single strand break repair (GO:0000012), in utero embryonic development (GO:0001701), pro-B cell differentiation (GO:0002328), base-excision repair (GO:0006284), nucleotide-excision repair, DNA gap filling (GO:0006297), double-strand break repair (GO:0006302), double-strand break repair via nonhomologous end joining (GO:0006303), central nervous system development (GO:0007417), cell population proliferation (GO:0008283), response to X-ray (GO:0010165), response to gamma radiation (GO:0010332), neurogenesis (GO:0022008), T cell differentiation in thymus (GO:0033077), V(D)J recombination (GO:0033151), immunoglobulin V(D)J recombination (GO:0033152), T cell receptor V(D)J recombination (GO:0033153), somatic stem cell population maintenance (GO:0035019), negative regulation of neuron apoptotic process (GO:0043524), isotype switching (GO:0045190), fibroblast proliferation (GO:0048144), positive regulation of fibroblast proliferation (GO:0048146), positive regulation of neurogenesis (GO:0050769), chromosome organization (GO:0051276), cell division (GO:0051301), neuron apoptotic process (GO:0051402), cellular response to lithium ion (GO:0071285), cellular response to ionizing radiation (GO:0071479), DNA biosynthetic process (GO:0071897), stem cell proliferation (GO:0072089), establishment of integrated proviral latency (GO:0075713), double-strand break repair via classical nonhomologous end joining (GO:0097680), DN2 thymocyte differentiation (GO:1904155), positive regulation of chromosome organization (GO:2001252), DNA repair (GO:0006281), DNA recombination (GO:0006310), DNA damage response (GO:0006974), response to ionizing radiation (GO:0010212)
GO Molecular Function (10): magnesium ion binding (GO:0000287), DNA binding (GO:0003677), DNA ligase activity (GO:0003909), DNA ligase (ATP) activity (GO:0003910), ATP binding (GO:0005524), AMP binding (GO:0016208), ligase activity (GO:0016874), nucleotide binding (GO:0000166), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (7): chromosome, telomeric region (GO:0000781), condensed chromosome (GO:0000793), nucleus (GO:0005634), nucleoplasm (GO:0005654), DNA-dependent protein kinase-DNA ligase 4 complex (GO:0005958), DNA ligase IV complex (GO:0032807), nonhomologous end joining complex (GO:0070419)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Integration of provirus | 1 |
| DNA Double-Strand Break Repair | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| DNA repair | 3 |
| nervous system development | 2 |
| response to ionizing radiation | 2 |
| V(D)J recombination | 2 |
| adenyl ribonucleotide binding | 2 |
| cation binding | 2 |
| nonhomologous end joining complex | 2 |
| nuclear protein-containing complex | 2 |
| chordate embryonic development | 1 |
| lymphoid progenitor cell differentiation | 1 |
| DNA metabolic process | 1 |
| nucleotide-excision repair | 1 |
| double-strand break repair | 1 |
| system development | 1 |
| cellular process | 1 |
| cell differentiation | 1 |
| T cell differentiation | 1 |
| somatic diversification of immune receptors via germline recombination within a single locus | 1 |
| somatic recombination of immunoglobulin gene segments | 1 |
| somatic recombination of T cell receptor gene segments | 1 |
| stem cell population maintenance | 1 |
| negative regulation of apoptotic process | 1 |
| regulation of neuron apoptotic process | 1 |
| neuron apoptotic process | 1 |
| somatic recombination of immunoglobulin genes involved in immune response | 1 |
| B cell activation involved in immune response | 1 |
| cell population proliferation | 1 |
| metal ion binding | 1 |
| nucleic acid binding | 1 |
| ligase activity, forming phosphoric ester bonds | 1 |
| catalytic activity, acting on DNA | 1 |
| DNA ligase activity | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| anion binding | 1 |
| catalytic activity | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| binding | 1 |
| chromosomal region | 1 |
| chromosome | 1 |
Protein interactions and networks
STRING
2062 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LIG4 | NHEJ1 | Q9H9Q4 | 999 |
| LIG4 | XRCC4 | Q13426 | 999 |
| LIG4 | PRKDC | P78527 | 989 |
| LIG4 | XRCC5 | P13010 | 985 |
| LIG4 | XRCC6 | P12956 | 982 |
| LIG4 | DCLRE1C | Q96SD1 | 929 |
| LIG4 | XRCC1 | P18887 | 877 |
| LIG4 | TP53BP1 | Q12888 | 869 |
| LIG4 | ATM | Q13315 | 868 |
| LIG4 | PAXX | Q9BUH6 | 847 |
| LIG4 | NBN | O60934 | 814 |
| LIG4 | XRCC3 | O43542 | 807 |
| LIG4 | POLL | Q9UGP5 | 791 |
| LIG4 | RAD52 | P43351 | 777 |
| LIG4 | RAD51 | Q06609 | 774 |
IntAct
73 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LIG4 | XRCC4 | psi-mi:“MI:0915”(physical association) | 0.970 |
| XRCC4 | LIG4 | psi-mi:“MI:0407”(direct interaction) | 0.970 |
| XRCC4 | LIG4 | psi-mi:“MI:0915”(physical association) | 0.970 |
| LIG4 | XRCC4 | psi-mi:“MI:0914”(association) | 0.970 |
| XRCC4 | LIG4 | psi-mi:“MI:0914”(association) | 0.970 |
| CSNK1A1 | FAM83G | psi-mi:“MI:0914”(association) | 0.900 |
| APLF | LIG4 | psi-mi:“MI:0407”(direct interaction) | 0.820 |
| APLF | LIG4 | psi-mi:“MI:0915”(physical association) | 0.820 |
| LIG4 | DCLRE1C | psi-mi:“MI:0407”(direct interaction) | 0.790 |
| DCLRE1C | LIG4 | psi-mi:“MI:0914”(association) | 0.790 |
| DCLRE1C | LIG4 | psi-mi:“MI:0915”(physical association) | 0.790 |
| LIG4 | DCLRE1C | psi-mi:“MI:0915”(physical association) | 0.790 |
| DCLRE1C | LIG4 | psi-mi:“MI:0407”(direct interaction) | 0.790 |
BioGRID (217): XRCC4 (Two-hybrid), LIG4 (Affinity Capture-MS), LIG4 (Affinity Capture-MS), LIG4 (Affinity Capture-MS), LIG4 (Affinity Capture-MS), XRCC4 (Two-hybrid), LIG4 (Affinity Capture-MS), LIG4 (Affinity Capture-MS), LIG4 (Two-hybrid), LIG4 (Affinity Capture-Western), LIG4 (Affinity Capture-Western), LIG4 (Affinity Capture-MS), LIG4 (Affinity Capture-MS), LIG4 (Protein-peptide), LIG4 (Protein-peptide)
ESM2 similar proteins: A0A0G2K344, A0A3Q1N1R0, E1BKH1, G3GTP0, G5EF51, O13728, O70481, P06814, P16259, P16885, P20807, P24135, P32871, P34529, P35875, P42336, P42337, P43368, P49917, P51186, P97393, Q09879, Q11208, Q13017, Q32TF8, Q32TG3, Q4V8Q1, Q5JST6, Q5JVL4, Q5R6L3, Q64691, Q6GL75, Q6GQ76, Q6J756, Q6NU25, Q758X6, Q803R5, Q8BTF7, Q8BTI9, Q8CIH5
Diamond homologs: A8N936, G3GTP0, O74833, P0CN08, P0CN09, P49917, P52496, Q0UCI9, Q1DKE7, Q2U6A1, Q4WVG8, Q54CR9, Q5BH83, Q5R6L3, Q6C8A3, Q6CSH0, Q6FVD8, Q75CA4, Q7SB49, Q7Z7W5, Q8BTF7, Q90YB1, Q9LL84, Q18GX5, Q46BA3, Q8TMT1, Q6L195, P04819, Q08387, A9A3K1, C3MJ14, C3MYD2, C3MZR1, C3N834, C3NF77, C4KIZ2, P12000, P51892, Q7X7E9, Q869E1
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRKDC | down-regulates | LIG4 | phosphorylation |
| LIG4 | “form complex” | “Lig4-Xrcc4 complex” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 24 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Nonhomologous End-Joining (NHEJ) | 6 | 67.2× | 2e-08 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| double-strand break repair via nonhomologous end joining | 9 | 172.3× | 1e-16 |
| telomere maintenance | 5 | 60.8× | 2e-06 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
809 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 87 |
| Likely pathogenic | 16 |
| Uncertain significance | 368 |
| Likely benign | 263 |
| Benign | 20 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1020928 | NM_206937.2(LIG4):c.2690C>G (p.Ser897Ter) | Pathogenic |
| 1338655 | NM_206937.2(LIG4):c.1512_1513dup (p.Arg505fs) | Pathogenic |
| 1418233 | NM_206937.2(LIG4):c.1246_1250dup (p.Leu418fs) | Pathogenic |
| 1450499 | NM_206937.2(LIG4):c.1475del (p.Pro492fs) | Pathogenic |
| 1453558 | NM_206937.2(LIG4):c.73C>T (p.Arg25Ter) | Pathogenic |
| 1456881 | NM_206937.2(LIG4):c.2175del (p.Trp725fs) | Pathogenic |
| 1459476 | NC_000013.10:g.(?108860881)(108863616_?)del | Pathogenic |
| 1983356 | NM_206937.2(LIG4):c.2317C>T (p.Gln773Ter) | Pathogenic |
| 2088321 | NM_206937.2(LIG4):c.1578G>A (p.Trp526Ter) | Pathogenic |
| 2131256 | NM_206937.2(LIG4):c.1037_1044del (p.Gly346fs) | Pathogenic |
| 2134586 | NM_206937.2(LIG4):c.2653_2654dup (p.Phe886fs) | Pathogenic |
| 2693449 | NM_206937.2(LIG4):c.22C>T (p.Gln8Ter) | Pathogenic |
| 2697967 | NM_206937.2(LIG4):c.250dup (p.Ile84fs) | Pathogenic |
| 2699025 | NM_206937.2(LIG4):c.807del (p.Phe268_Tyr269insTer) | Pathogenic |
| 2701101 | NM_206937.2(LIG4):c.1636G>T (p.Glu546Ter) | Pathogenic |
| 2703202 | NM_206937.2(LIG4):c.1621G>T (p.Gly541Ter) | Pathogenic |
| 2703249 | NM_206937.2(LIG4):c.2190del (p.Phe730fs) | Pathogenic |
| 2720977 | NM_206937.2(LIG4):c.1880dup (p.Arg628fs) | Pathogenic |
| 2721503 | NM_206937.2(LIG4):c.1383del (p.Glu461fs) | Pathogenic |
| 2724097 | NM_206937.2(LIG4):c.1210del (p.Gln404fs) | Pathogenic |
| 2732222 | NM_206937.2(LIG4):c.106dup (p.Ile36fs) | Pathogenic |
| 2735102 | NM_206937.2(LIG4):c.1870C>T (p.Gln624Ter) | Pathogenic |
| 2736055 | NM_206937.2(LIG4):c.839A>G (p.Gln280Arg) | Pathogenic |
| 2736056 | NM_206937.2(LIG4):c.833G>T (p.Arg278Leu) | Pathogenic |
| 2736058 | NM_206937.2(LIG4):c.482del (p.Ala161fs) | Pathogenic |
| 2745502 | NM_206937.2(LIG4):c.536C>G (p.Ser179Ter) | Pathogenic |
| 2749009 | NM_206937.2(LIG4):c.374_375del (p.Phe125fs) | Pathogenic |
| 2763805 | NM_206937.2(LIG4):c.575del (p.Lys192fs) | Pathogenic |
| 2768964 | NM_206937.2(LIG4):c.678del (p.Arg226fs) | Pathogenic |
| 2771552 | NM_206937.2(LIG4):c.1536_1537delinsTT (p.Met512_Lys513delinsIleTer) | Pathogenic |
SpliceAI
462 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 13:108211294:TAA:T | acceptor_gain | 0.9900 |
| 13:108211297:C:CC | acceptor_gain | 0.9900 |
| 13:108211292:TTTAA:T | acceptor_gain | 0.9800 |
| 13:108211293:TTAA:T | acceptor_gain | 0.9800 |
| 13:108215479:CCCA:C | donor_loss | 0.9800 |
| 13:108215480:CCA:C | donor_loss | 0.9800 |
| 13:108215481:CAC:C | donor_loss | 0.9800 |
| 13:108215483:C:CT | donor_loss | 0.9800 |
| 13:108211296:ACTAG:A | acceptor_loss | 0.9700 |
| 13:108211297:C:G | acceptor_loss | 0.9700 |
| 13:108211298:T:A | acceptor_loss | 0.9700 |
| 13:108214561:CCT:C | donor_gain | 0.9700 |
| 13:108215479:C:A | donor_gain | 0.9700 |
| 13:108215506:G:C | donor_gain | 0.9700 |
| 13:108215505:AG:A | donor_gain | 0.9600 |
| 13:108211295:AA:A | acceptor_gain | 0.9500 |
| 13:108214719:C:CC | acceptor_gain | 0.9500 |
| 13:108215484:C:G | donor_loss | 0.9500 |
| 13:108215489:G:C | donor_gain | 0.9500 |
| 13:108214623:C:CT | acceptor_gain | 0.9300 |
| 13:108215492:AAG:A | donor_gain | 0.9100 |
| 13:108215494:G:A | donor_gain | 0.9100 |
| 13:108214556:CGTTA:C | donor_loss | 0.9000 |
| 13:108214557:GTTAC:G | donor_loss | 0.9000 |
| 13:108214558:TTACC:T | donor_loss | 0.9000 |
| 13:108214559:T:TG | donor_loss | 0.9000 |
| 13:108214560:A:C | donor_loss | 0.9000 |
| 13:108214561:C:CA | donor_loss | 0.9000 |
| 13:108214562:C:T | donor_loss | 0.9000 |
| 13:108214624:A:C | acceptor_gain | 0.9000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000618045 (13:108220061 C>T), RS1000701102 (13:108213000 A>G), RS1000737457 (13:108219067 C>T), RS1000801421 (13:108219646 C>G,T), RS1000810940 (13:108213312 G>A), RS1000843785 (13:108212081 A>G), RS1001511452 (13:108214674 G>A), RS1001607543 (13:108208154 C>G,T), RS1001852841 (13:108219713 C>G), RS1002018005 (13:108207210 A>G), RS1002246874 (13:108213485 C>T), RS1002438378 (13:108213791 T>C), RS1002822158 (13:108217444 G>A), RS1003302220 (13:108219785 A>C,G), RS1003328012 (13:108219967 C>A,T)
Disease associations
OMIM: gene MIM:601837 | disease phenotypes: MIM:606593, MIM:254500, MIM:602450
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| DNA ligase IV deficiency | Definitive | Autosomal recessive |
| Dubowitz syndrome | Supportive | Autosomal recessive |
| Omenn syndrome | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| DNA ligase IV deficiency | Definitive | AR |
Mondo (7): DNA ligase IV deficiency (MONDO:0011686), plasma cell myeloma (MONDO:0009693), severe combined immunodeficiency due to DCLRE1C deficiency (MONDO:0011225), severe combined immunodeficiency (MONDO:0015974), thyroid gland papillary carcinoma (MONDO:0005075), Dubowitz syndrome (MONDO:0009124), Omenn syndrome (MONDO:0011338)
Orphanet (6): LIG4 syndrome (Orphanet:99812), Multiple myeloma (Orphanet:29073), AL amyloidosis (Orphanet:85443), Severe combined immunodeficiency due to DCLRE1C deficiency (Orphanet:275), Severe combined immunodeficiency (Orphanet:183660), Differentiated thyroid carcinoma (Orphanet:146)
HPO phenotypes
164 total (30 of 164 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000047 | Hypospadias |
| HP:0000054 | Micropenis |
| HP:0000055 | Abnormal female external genitalia morphology |
| HP:0000100 | Nephrotic syndrome |
| HP:0000126 | Hydronephrosis |
| HP:0000141 | Amenorrhea |
| HP:0000154 | Wide mouth |
| HP:0000164 | Abnormality of the dentition |
| HP:0000176 | Submucous cleft hard palate |
| HP:0000218 | High palate |
| HP:0000233 | Thin vermilion border |
| HP:0000238 | Hydrocephalus |
| HP:0000248 | Brachycephaly |
| HP:0000252 | Microcephaly |
| HP:0000260 | Wide anterior fontanel |
| HP:0000270 | Delayed cranial suture closure |
| HP:0000275 | Narrow face |
| HP:0000286 | Epicanthus |
| HP:0000294 | Low anterior hairline |
| HP:0000316 | Hypertelorism |
| HP:0000320 | Bird-like facies |
| HP:0000340 | Sloping forehead |
| HP:0000341 | Narrow forehead |
| HP:0000347 | Micrognathia |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000365 | Hearing impairment |
| HP:0000403 | Recurrent otitis media |
| HP:0000411 | Protruding ear |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000253_9 | Attention deficit hyperactivity disorder and conduct disorder | 1.000000e-06 |
| GCST006304_13 | Irritable bowel syndrome | 5.000000e-06 |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009101 | Multiple Myeloma | C04.557.595.500; C14.907.454.460; C15.378.147.780.650; C15.378.463.515.460; C20.683.515.845; C20.683.780.650 |
| D016511 | Severe Combined Immunodeficiency | C16.320.798.750; C16.614.815; C18.452.284.800; C20.673.795.750 |
| C535718 | Dubowitz syndrome (supp.) | |
| C564694 | LIG4 Syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL4296097 (PROTEIN COMPLEX), CHEMBL4523595 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
1 potent at pChembl≥5 of 1 total, top 1 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.30 | IC50 | 5000 | nM | CHEMBL4458668 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 6-amino-5-(benzylideneamino)-2-sulfanylidene-1H-pyrimidin-4-one | 1540614: Competitive inhibition of human DNA ligase 4 using nicked DNA as substrate by high-throughput fluorescence energy transfer-based DNA joining assay | ic50 | 5.0000 | uM |
CTD chemical–gene interactions
59 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases expression | 4 |
| methacrylaldehyde | affects cotreatment, decreases expression, increases abundance | 2 |
| Acrolein | affects cotreatment, decreases expression, increases abundance | 2 |
| Doxorubicin | increases activity, decreases expression, affects reaction | 2 |
| Ozone | affects cotreatment, decreases expression, increases abundance | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| GSK-J4 | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| lasiocarpine | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | decreases expression, increases abundance, affects cotreatment | 1 |
| 4-biphenylamine | decreases reaction, increases expression | 1 |
| bisphenol A | increases expression, increases reaction | 1 |
| selenocystine | decreases expression | 1 |
| terbufos | increases methylation | 1 |
| trichostatin A | increases expression | 1 |
| nickel chloride | decreases expression | 1 |
| zinc chromate | increases abundance, increases expression | 1 |
| 1-nitropyrene | increases expression | 1 |
| chromium hexavalent ion | increases abundance, increases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| cylindrospermopsin | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| jinfukang | decreases expression | 1 |
| riccardin D | increases expression | 1 |
| Bortezomib | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Air Pollutants | affects cotreatment, decreases expression, increases abundance | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4142330 | Binding | Inhibition of human DNA Lig4/XRCCR at 10 uM using double strand nicked DNA as substrate after 30 mins in presence of ATP by acrylamide-based fluorescence-assay | Synthesis and bio-evaluation of indole-chalcone based benzopyrans as promising antiligase and antiproliferative agents. — Eur J Med Chem |
Cellosaurus cell lines
18 cell lines: 10 cancer cell line, 5 finite cell line, 2 transformed cell line, 1 telomerase immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_1K21 | GM17523 | Finite cell line | Female |
| CVCL_1Q95 | H414-LIG4(+/-) | Cancer cell line | Male |
| CVCL_1R04 | HCT116-LIG4(+/-) | Cancer cell line | Male |
| CVCL_2278 | 180BR | Finite cell line | Male |
| CVCL_A1TX | 411BR | Finite cell line | Sex unspecified |
| CVCL_A1TY | 411BRneo | Finite cell line | Sex unspecified |
| CVCL_A1TZ | FB2303 | Finite cell line | Sex unspecified |
| CVCL_A1UA | LB2304 | Transformed cell line | Sex unspecified |
| CVCL_E2B3 | HAP1 LIG4 (-) 3 | Cancer cell line | Male |
| CVCL_E2B4 | HAP1 LIG4 (-) 4 | Cancer cell line | Male |
Clinical trials (associated diseases)
303 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00104104 | PHASE4 | COMPLETED | A Multiple Myeloma Trial in Patients With Bone Metastases |
| NCT00211211 | PHASE4 | COMPLETED | FREE Study - Fracture Reduction Evaluation |
| NCT00242528 | PHASE4 | WITHDRAWN | Open-label Study, to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Bone Lesions Secondary to Multiple Myeloma. |
| NCT00257114 | PHASE4 | COMPLETED | Evaluation of VELCADE Given as Retreatment to Multiple Myeloma Patients for Efficacy, Safety and Tolerability |
| NCT00352703 | PHASE4 | COMPLETED | PROMPT - Palifermin in Reduction of Oral Mucositis in PBSC Transplantation |
| NCT00361140 | PHASE4 | COMPLETED | Busulfan Safety/Efficacy as Conditioning Prior to Hematopoietic Cell Transplantation (HCT) |
| NCT00622505 | PHASE4 | COMPLETED | Zoledronic Acid Treatment (Every 4 or 12 Weeks) to Prevent Skeletal Complications in Advanced Multiple Myeloma Participants |
| NCT00652041 | PHASE4 | COMPLETED | Bortezomib/Adriamycine/Melfalan/Prednisone (VAMP)/Thalidomide/Cyclophosphamide/Dexamethasone (TaCyDex) or Bortezomib/Melfalan/Prednisone (V-MP)/TaCyDex) in Refractary or Relapsed Multiple Myeloma |
| NCT00733538 | PHASE4 | COMPLETED | Stage I Multiple Myeloma Treatment |
| NCT01087008 | PHASE4 | COMPLETED | Zoledronic Acid in Patients With Multiple Myeloma and Asymptomatic Biochemical Relapse |
| NCT01249690 | PHASE4 | UNKNOWN | Efficacy Study of PAD and TAD in Newly Diagnosed Multiple Myeloma |
| NCT01410929 | PHASE4 | WITHDRAWN | Evaluation of Vertebral Compression Fracture Fixation With RF Kyphoplasty in Patients With Multiple Myeloma |
| NCT01731886 | PHASE4 | COMPLETED | Lenalidomide and Dexamethasone With/Without Stem Cell Transplant in Patients With Multiple Myeloma |
| NCT01868828 | PHASE4 | UNKNOWN | A Study of PAD Versus Velcade, Cyclophosphamide and Dexamethasone (VCD) Treatment in Subjects With Multiple Myeloma |
| NCT02268890 | PHASE4 | COMPLETED | A Pharmacokinetic Study of Bortezomib in Taiwanese Participants With Multiple Myeloma |
| NCT02286830 | PHASE4 | COMPLETED | Prolonged Protection From Bone Disease in Multiple Myeloma |
| NCT02559154 | PHASE4 | UNKNOWN | Modified Bortezomib-based Combination Therapy for Multiple Myeloma |
| NCT02577783 | PHASE4 | UNKNOWN | PDD vs PAD to Treat Initially Diagnosed MM |
| NCT02773550 | PHASE4 | TERMINATED | Treatment With a Scheme With Low Doses of Bortezomib / Melphalan / Prednisone (MPV) in Patients With Multiple Myeloma |
| NCT02958969 | PHASE4 | COMPLETED | Apixaban for Primary Prevention of Venous Thromboembolism in Patients With Multiple Myeloma |
| NCT03173092 | PHASE4 | TERMINATED | A Study of Ixazomib (NINLARO®) in Combination With Lenalidomide and Dexamethasone (IRD) for the Treatment of Participants With Multiple Myeloma (MM) |
| NCT03619252 | PHASE4 | COMPLETED | Pneumococcal Vaccination of Multiple Myeloma Patients on Novel Agents |
| NCT03768960 | PHASE4 | COMPLETED | A Study of DARZALEX (Daratumumab) In Indian Participants With Relapsed and Refractory Multiple Myeloma, Whose Prior Therapy Included a Proteasome Inhibitor and an Immunomodulatory Agent |
| NCT03829371 | PHASE4 | ACTIVE_NOT_RECRUITING | STUDY COMPARING TWO STANDARD TREATMENTS IN AUTOLOGOUS STEM CELL TRANSPLANTATION INELIGIBLE POPULATION AFFECTED BY MULTIPLE MYELOMA |
| NCT03908138 | PHASE4 | UNKNOWN | RDD Versus VDD in Newly Diagnosed Patients With Multiple Myeloma |
| NCT04217967 | PHASE4 | COMPLETED | Ixazomib, Lenalidomide, and Combination for Maintenance in NDMM Patients |
| NCT04952766 | PHASE4 | COMPLETED | Study Evaluating SARS-CoV-2 (COVID-19) Humoral Response After BNT162b2 Vaccine in Immunocompromised Adults Compared to Healthy Adults |
| NCT04989140 | PHASE4 | UNKNOWN | Study of Pomalidomide, Oral Dexamethasone and Ixazomib in Patients With Relapsed MM Who Have Received Lenalidomide |
| NCT05183139 | PHASE4 | WITHDRAWN | A Multicenter In-class Transition Study of Ixazomib Combined With Pomalidomide and Dexamethasone or With Lenalidomide and Dexamethasone in Adults With Relapsed/Refractory Multiple Myeloma |
| NCT05201781 | PHASE4 | RECRUITING | A Long-term Study for Participants Previously Treated With Ciltacabtagene Autoleucel |
| NCT05429515 | PHASE4 | NOT_YET_RECRUITING | Effect of HFR-SUPRA in the Treatment of Multiple Myeloma-related Acute Kidney Injury |
| NCT05511428 | PHASE4 | COMPLETED | Home Based Daratumumab Administration for Patients With Multiple Myeloma |
| NCT05545202 | PHASE4 | UNKNOWN | A Randomized, Comparative, Double-blind Trial of Pentaisomaltose and Dimethyl Sulphoxide for Cryoprotection of Hematopoietic Stem Cells in Subjects With Multiple Myeloma or Malignant Lymphoma With a Need for Autologous Transplantation |
| NCT05555329 | PHASE4 | COMPLETED | Alternative Dosing Scheme of Pomalidomide 4 mg Every Other Day Versus Pomalidomide 2 mg and 4 mg Every Day; the POMAlternative Study |
| NCT05722405 | PHASE4 | RECRUITING | Ixazomib Plus Low-dose Lenalidomide Versus Ixazomib Alone for Maintenance Treatment of High Risk Multiple Myeloma |
| NCT05855122 | PHASE4 | UNKNOWN | Safety and ASCT-related Symptom Burden Optimization of Tocilizumab in ASCT Following HD Melphalan Conditioning for Multiple Myeloma Patients |
| NCT05944783 | PHASE4 | NOT_YET_RECRUITING | Bioequivalence Studies of Dasatinib 100 Mg |
| NCT06057402 | PHASE4 | RECRUITING | Elranatamab Post Trial Access Study for Participants With Multiple Myeloma (MM) |
| NCT06251076 | PHASE4 | RECRUITING | Plan Development for Giving Teclistamab in the Outpatient Setting |
Related Atlas pages
- Associated diseases: DNA ligase IV deficiency, Dubowitz syndrome, Omenn syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): conduct disorder, DNA ligase IV deficiency, Dubowitz syndrome, irritable bowel syndrome, Omenn syndrome, severe combined immunodeficiency, severe combined immunodeficiency due to DCLRE1C deficiency, thyroid gland papillary carcinoma