LIMCH1-AS1

Summary

LIMCH1-AS1 (LIMCH1 antisense RNA 1, HGNC:58416) is a long non-coding RNA gene on chromosome 4p13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58416
Approved symbol	LIMCH1-AS1
Name	LIMCH1 antisense RNA 1
Location	4p13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249216
Ensembl biotype	lncRNA
Entrez	105374421

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000506475, ENST00000735553, ENST00000735554

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000506475 — 3 exons

Exon	Start	End
ENSE00002037498	41689644	41689752
ENSE00002054414	41688858	41688927
ENSE00002074795	41692542	41692797

Expression profiles

Bgee: expression breadth ubiquitous, 122 present calls, max score 87.55.

Top tissues by expression

122 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	87.55	gold quality
corpus callosum	UBERON:0002336	83.85	gold quality
sural nerve	UBERON:0015488	78.83	gold quality
right lung	UBERON:0002167	71.40	gold quality
testis	UBERON:0000473	70.53	gold quality
left testis	UBERON:0004533	70.28	gold quality
right testis	UBERON:0004534	69.44	gold quality
ventricular zone	UBERON:0003053	69.06	gold quality
skeletal muscle tissue	UBERON:0001134	68.39	gold quality
apex of heart	UBERON:0002098	68.24	gold quality
tonsil	UBERON:0002372	68.03	gold quality
upper lobe of left lung	UBERON:0008952	68.03	gold quality
calcaneal tendon	UBERON:0003701	67.94	gold quality
heart left ventricle	UBERON:0002084	67.67	gold quality
cortical plate	UBERON:0005343	67.37	gold quality
lung	UBERON:0002048	67.28	gold quality
adrenal tissue	UBERON:0018303	66.75	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	66.07	gold quality
muscle of leg	UBERON:0001383	65.96	gold quality
ganglionic eminence	UBERON:0004023	65.84	gold quality
gastrocnemius	UBERON:0001388	65.73	gold quality
heart	UBERON:0000948	65.49	gold quality
hindlimb stylopod muscle	UBERON:0004252	65.48	gold quality
right atrium auricular region	UBERON:0006631	64.46	gold quality
left lobe of thyroid gland	UBERON:0001120	63.80	gold quality
ascending aorta	UBERON:0001496	63.72	gold quality
thoracic aorta	UBERON:0001515	63.56	gold quality
descending thoracic aorta	UBERON:0002345	63.44	gold quality
right lobe of thyroid gland	UBERON:0001119	63.08	gold quality
thyroid gland	UBERON:0002046	62.91	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.64

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.