LIMS1-AS1

Summary

LIMS1-AS1 (LIMS1 antisense RNA 1, HGNC:40342) is a long non-coding RNA gene on chromosome 2q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40342
Approved symbol	LIMS1-AS1
Name	LIMS1 antisense RNA 1
Location	2q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228763
Ensembl biotype	lncRNA
Entrez	106182118
RNAcentral	URS000045B1A0 — lncRNA, 477 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000411710

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000411710 — 3 exons

Exon	Start	End
ENSE00001624474	108676795	108676930
ENSE00002435773	108678439	108678601
ENSE00002524687	108677314	108677491

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 78.33.

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.33	gold quality
endometrium	UBERON:0001295	74.44	gold quality
hindlimb stylopod muscle	UBERON:0004252	72.55	gold quality
gastrocnemius	UBERON:0001388	72.41	gold quality
subcutaneous adipose tissue	UBERON:0002190	72.27	gold quality
ectocervix	UBERON:0012249	72.05	gold quality
muscle of leg	UBERON:0001383	71.94	gold quality
stromal cell of endometrium	CL:0002255	71.52	gold quality
tibial artery	UBERON:0007610	71.33	gold quality
popliteal artery	UBERON:0002250	71.32	gold quality
uterine cervix	UBERON:0000002	70.85	gold quality
adrenal tissue	UBERON:0018303	70.51	gold quality
endocervix	UBERON:0000458	70.50	gold quality
adipose tissue	UBERON:0001013	69.82	gold quality
ascending aorta	UBERON:0001496	69.61	gold quality
monocyte	CL:0000576	69.58	gold quality
smooth muscle tissue	UBERON:0001135	69.43	gold quality
right ovary	UBERON:0002118	69.29	gold quality
thoracic aorta	UBERON:0001515	69.06	gold quality
upper lobe of left lung	UBERON:0008952	69.06	gold quality
skeletal muscle tissue	UBERON:0001134	68.94	gold quality
left ovary	UBERON:0002119	68.68	gold quality
vagina	UBERON:0000996	68.48	gold quality
leukocyte	CL:0000738	68.46	gold quality
lymph node	UBERON:0000029	68.45	gold quality
corpus callosum	UBERON:0002336	68.39	gold quality
ovary	UBERON:0000992	68.32	gold quality
lung	UBERON:0002048	68.31	gold quality
left adrenal gland cortex	UBERON:0035825	68.31	gold quality
calcaneal tendon	UBERON:0003701	68.20	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.70

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.