LINC00028

Summary

LINC00028 (long intergenic non-protein coding RNA 28, HGNC:16224) is a long non-coding RNA gene on chromosome 20q11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:16224
Approved symbol	LINC00028
Name	long intergenic non-protein coding RNA 28
Location	20q11.21
Locus type	RNA, long non-coding
Status	Approved
Aliases	dJ1093G12.6
Ensembl gene	ENSG00000233354
Ensembl biotype	lncRNA
Entrez	140875
RNAcentral	URS00003D77DE — lncRNA, 587 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000435497, ENST00000719186, ENST00000719187

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000435497 — 4 exons

Exon	Start	End
ENSE00001639333	31487476	31487574
ENSE00001700594	31487282	31487359
ENSE00001716018	31485778	31486023
ENSE00001743285	31487032	31487195

Expression profiles

Bgee: expression breadth ubiquitous, 139 present calls, max score 86.82.

Top tissues by expression

229 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	86.82	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.55	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	75.67	gold quality
heart right ventricle	UBERON:0002080	71.01	gold quality
nasal cavity epithelium	UBERON:0005384	67.97	gold quality
gingival epithelium	UBERON:0001949	67.24	gold quality
gingiva	UBERON:0001828	65.89	gold quality
vastus lateralis	UBERON:0001379	65.65	gold quality
quadriceps femoris	UBERON:0001377	65.53	gold quality
body of tongue	UBERON:0011876	63.96	gold quality
muscle tissue	UBERON:0002385	63.54	gold quality
skeletal muscle tissue	UBERON:0001134	63.52	silver quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	62.75	gold quality
esophagus squamous epithelium	UBERON:0006920	62.70	gold quality
sural nerve	UBERON:0015488	62.38	gold quality
parotid gland	UBERON:0001831	61.92	gold quality
medial globus pallidus	UBERON:0002477	61.80	gold quality
vena cava	UBERON:0004087	61.73	gold quality
myocardium	UBERON:0002349	61.25	gold quality
tongue	UBERON:0001723	61.20	gold quality
globus pallidus	UBERON:0001875	61.01	gold quality
pharyngeal mucosa	UBERON:0000355	60.93	gold quality
biceps brachii	UBERON:0001507	60.50	gold quality
sperm	CL:0000019	60.29	gold quality
liver	UBERON:0002107	60.00	silver quality
cardia of stomach	UBERON:0001162	59.58	gold quality
nipple	UBERON:0002030	59.36	gold quality
corpus callosum	UBERON:0002336	59.26	gold quality
saphenous vein	UBERON:0007318	59.17	gold quality
synovial joint	UBERON:0002217	58.87	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.