LINC00051

Summary

LINC00051 (long intergenic non-protein coding RNA 51, HGNC:32028) is a long non-coding RNA gene on chromosome 8q24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:32028
Approved symbol	LINC00051
Name	long intergenic non-protein coding RNA 51
Location	8q24.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254008
Ensembl biotype	lncRNA
Entrez	619434
RNAcentral	URS000075D6B7 — lncRNA, 1058 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000517704, ENST00000794969, ENST00000794970, ENST00000794971

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000517704 — 3 exons

Exon	Start	End
ENSE00002106754	142206685	142206875
ENSE00002117390	142208250	142209003
ENSE00002123526	142198356	142198456

Expression profiles

Bgee: expression breadth broad, 84 present calls, max score 62.65.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0829 / max 30.7264, expressed in 22 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
91329	0.0829	22

Top tissues by expression

187 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortical plate	UBERON:0005343	62.65	gold quality
ganglionic eminence	UBERON:0004023	58.52	gold quality
endothelial cell	CL:0000115	55.74	gold quality
sural nerve	UBERON:0015488	52.67	silver quality
calcaneal tendon	UBERON:0003701	51.20	gold quality
upper lobe of lung	UBERON:0008948	50.68	silver quality
lower lobe of lung	UBERON:0008949	50.40	silver quality
prefrontal cortex	UBERON:0000451	50.22	gold quality
right adrenal gland cortex	UBERON:0035827	49.77	gold quality
monocyte	CL:0000576	49.40	silver quality
nucleus accumbens	UBERON:0001882	49.09	gold quality
right adrenal gland	UBERON:0001233	47.71	gold quality
muscle of leg	UBERON:0001383	47.14	gold quality
caudate nucleus	UBERON:0001873	46.97	gold quality
putamen	UBERON:0001874	46.85	gold quality
substantia nigra	UBERON:0002038	46.80	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	46.58	silver quality
right lobe of liver	UBERON:0001114	46.44	silver quality
adult mammalian kidney	UBERON:0000082	46.16	gold quality
gastrocnemius	UBERON:0001388	46.12	silver quality
islet of Langerhans	UBERON:0000006	45.97	silver quality
midbrain	UBERON:0001891	45.84	gold quality
cerebellar hemisphere	UBERON:0002245	45.63	silver quality
right hemisphere of cerebellum	UBERON:0014890	45.14	silver quality
cerebellum	UBERON:0002037	44.82	silver quality
adrenal gland	UBERON:0002369	44.75	gold quality
tibial artery	UBERON:0007610	44.70	silver quality
adrenal cortex	UBERON:0001235	44.64	gold quality
left coronary artery	UBERON:0001626	44.49	silver quality
Brodmann (1909) area 9	UBERON:0013540	44.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.