LINC00229

Summary

LINC00229 (long intergenic non-protein coding RNA 229, HGNC:13240) is a long non-coding RNA gene on chromosome 22q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:13240
Approved symbol	LINC00229
Name	long intergenic non-protein coding RNA 229
Location	22q13.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	dJ474I12.C22.2
Ensembl gene	ENSG00000234300
Ensembl biotype	lncRNA
Entrez	414351
RNAcentral	URS0000759A01 — lncRNA, 826 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000443783, ENST00000834593, ENST00000834594, ENST00000834595, ENST00000834596, ENST00000834597, ENST00000834598, ENST00000834599

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000443783 — 5 exons

Exon	Start	End
ENSE00001686455	44622607	44622723
ENSE00001736634	44622287	44622456
ENSE00004252183	44606289	44606645
ENSE00004252190	44625317	44625431
ENSE00004476077	44606931	44607048

Expression profiles

Bgee: expression breadth broad, 62 present calls, max score 83.84.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0110 / max 10.3750, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
194545	0.0110	4

Top tissues by expression

62 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.84	silver quality
right testis	UBERON:0004534	80.50	gold quality
left testis	UBERON:0004533	80.40	gold quality
testis	UBERON:0000473	80.13	gold quality
myometrium	UBERON:0001296	64.40	gold quality
islet of Langerhans	UBERON:0000006	57.59	gold quality
multicellular organism	UBERON:0000468	54.23	gold quality
lymph node	UBERON:0000029	51.38	gold quality
prefrontal cortex	UBERON:0000451	49.85	gold quality
blood	UBERON:0000178	49.22	silver quality
gastrocnemius	UBERON:0001388	48.70	gold quality
urinary bladder	UBERON:0001255	48.44	gold quality
monocyte	CL:0000576	47.34	silver quality
body of pancreas	UBERON:0001150	45.72	silver quality
Brodmann (1909) area 9	UBERON:0013540	45.18	gold quality
tibial nerve	UBERON:0001323	45.16	gold quality
right lobe of liver	UBERON:0001114	45.08	silver quality
heart left ventricle	UBERON:0002084	44.96	silver quality
tibial artery	UBERON:0007610	44.95	gold quality
right hemisphere of cerebellum	UBERON:0014890	44.27	silver quality
endocervix	UBERON:0000458	44.17	gold quality
body of stomach	UBERON:0001161	43.96	gold quality
putamen	UBERON:0001874	43.75	gold quality
thyroid gland	UBERON:0002046	43.62	gold quality
pituitary gland	UBERON:0000007	43.10	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	43.05	gold quality
adipose tissue	UBERON:0001013	42.77	gold quality
ascending aorta	UBERON:0001496	42.60	gold quality
subcutaneous adipose tissue	UBERON:0002190	42.59	gold quality
prostate gland	UBERON:0002367	42.49	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.15

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.