LINC00237

Summary

LINC00237 (long intergenic non-protein coding RNA 237, HGNC:38166) is a long non-coding RNA gene on chromosome 20p11.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:38166
Approved symbol	LINC00237
Name	long intergenic non-protein coding RNA 237
Location	20p11.23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225127
Ensembl biotype	lncRNA
OMIM	614992
Entrez	105372556
RNAcentral	URS00003B7529 — lncRNA, 630 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 35 — 35 lncRNA

ENST00000420705, ENST00000455890, ENST00000593272, ENST00000655093, ENST00000668193, ENST00000668281, ENST00000670814, ENST00000671648, ENST00000685825, ENST00000691244, ENST00000715237, ENST00000715238, ENST00000715239, ENST00000715240, ENST00000715241, ENST00000715242, ENST00000715243, ENST00000715244, ENST00000715245, ENST00000715247, ENST00000715248, ENST00000715249, ENST00000715250, ENST00000715251, ENST00000833173, ENST00000833174, ENST00000833175, ENST00000833176, ENST00000833177, ENST00000833178, ENST00000833179, ENST00000833180, ENST00000833181, ENST00000833182, ENST00000833183

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420705 — 2 exons

Exon	Start	End
ENSE00004026289	21106271	21106358
ENSE00004026303	21092809	21093852

Expression profiles

Bgee: expression breadth broad, 85 present calls, max score 89.55.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1203 / max 27.1709, expressed in 54 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
186597	0.0569	24
186596	0.0264	5
186598	0.0249	14
186595	0.0120	3

Top tissues by expression

85 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	89.55	gold quality
hypothalamus	UBERON:0001898	68.80	gold quality
amygdala	UBERON:0001876	65.02	gold quality
substantia nigra	UBERON:0002038	64.46	gold quality
ganglionic eminence	UBERON:0004023	63.93	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	63.40	gold quality
prefrontal cortex	UBERON:0000451	62.50	gold quality
anterior cingulate cortex	UBERON:0009835	62.43	gold quality
Ammon’s horn	UBERON:0001954	61.92	gold quality
pituitary gland	UBERON:0000007	60.90	gold quality
adenohypophysis	UBERON:0002196	60.75	gold quality
cerebral cortex	UBERON:0000956	59.68	gold quality
cortical plate	UBERON:0005343	59.48	gold quality
brain	UBERON:0000955	59.30	gold quality
frontal cortex	UBERON:0001870	59.27	gold quality
putamen	UBERON:0001874	59.10	gold quality
corpus callosum	UBERON:0002336	59.10	gold quality
nucleus accumbens	UBERON:0001882	59.08	gold quality
superior frontal gyrus	UBERON:0002661	58.91	gold quality
caudate nucleus	UBERON:0001873	58.00	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	57.74	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.28	gold quality
primary visual cortex	UBERON:0002436	56.53	gold quality
skeletal muscle tissue	UBERON:0001134	56.26	gold quality
Brodmann (1909) area 9	UBERON:0013540	55.76	gold quality
leukocyte	CL:0000738	55.40	gold quality
monocyte	CL:0000576	54.68	gold quality
right frontal lobe	UBERON:0002810	54.62	gold quality
liver	UBERON:0002107	53.50	silver quality
duodenum	UBERON:0002114	52.64	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.