LINC00269

Summary

LINC00269 (long intergenic non-protein coding RNA 269, HGNC:26586) is a long non-coding RNA gene on chromosome Xq13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:26586
Approved symbol	LINC00269
Name	long intergenic non-protein coding RNA 269
Location	Xq13.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ33610
Ensembl gene	ENSG00000215162
Ensembl biotype	lncRNA
Entrez	100996279
RNAcentral	URS000050E9EC — lncRNA, 2173 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000399711, ENST00000654300, ENST00000823013

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000399711 — 5 exons

Exon	Start	End
ENSE00001539720	69208252	69209924
ENSE00001539723	69204891	69205027
ENSE00001539725	69204332	69204449
ENSE00001539728	69201477	69201632
ENSE00001539730	69179557	69179645

Expression profiles

Bgee: expression breadth broad, 62 present calls, max score 65.70.

Top tissues by expression

173 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
secondary oocyte	CL:0000655	65.70	gold quality
buccal mucosa cell	CL:0002336	65.47	gold quality
oocyte	CL:0000023	65.28	gold quality
biceps brachii	UBERON:0001507	61.30	gold quality
esophagus squamous epithelium	UBERON:0006920	60.64	gold quality
mammary duct	UBERON:0001765	59.38	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	59.21	gold quality
lateral nuclear group of thalamus	UBERON:0002736	59.09	gold quality
pons	UBERON:0000988	57.28	gold quality
germinal epithelium of ovary	UBERON:0001304	57.11	gold quality
ganglionic eminence	UBERON:0004023	55.48	silver quality
superficial temporal artery	UBERON:0001614	55.38	gold quality
skeletal muscle tissue	UBERON:0001134	54.82	gold quality
mammary gland	UBERON:0001911	54.74	gold quality
lateral globus pallidus	UBERON:0002476	54.56	gold quality
thoracic mammary gland	UBERON:0005200	54.35	gold quality
vastus lateralis	UBERON:0001379	53.71	gold quality
substantia nigra pars reticulata	UBERON:0001966	53.51	gold quality
bone marrow	UBERON:0002371	53.50	gold quality
prefrontal cortex	UBERON:0000451	53.48	gold quality
quadriceps femoris	UBERON:0001377	53.41	gold quality
deltoid	UBERON:0001476	52.76	gold quality
corpus epididymis	UBERON:0004359	52.26	silver quality
heart right ventricle	UBERON:0002080	51.47	gold quality
islet of Langerhans	UBERON:0000006	50.85	gold quality
testis	UBERON:0000473	50.70	gold quality
cauda epididymis	UBERON:0004360	50.25	gold quality
substantia nigra pars compacta	UBERON:0001965	49.02	gold quality
heart left ventricle	UBERON:0002084	48.80	silver quality
pancreas	UBERON:0001264	48.55	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.