LINC00279

Summary

LINC00279 (long intergenic non-protein coding RNA 279, HGNC:38724) is a long non-coding RNA gene on chromosome Yp11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:38724
Approved symbol	LINC00279
Name	long intergenic non-protein coding RNA 279
Location	Yp11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000286217
Ensembl biotype	lncRNA
Entrez	100873963
RNAcentral	URS0000A76566 — lncRNA, 628 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 21 — 21 lncRNA

ENST00000413486, ENST00000650791, ENST00000650816, ENST00000651511, ENST00000651700, ENST00000651793, ENST00000652539, ENST00000657784, ENST00000767031, ENST00000842833, ENST00000842834, ENST00000842835, ENST00000842836, ENST00000842837, ENST00000842838, ENST00000842839, ENST00000842840, ENST00000842841, ENST00000842842, ENST00000842843, ENST00000842844

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413486 — 3 exons

Exon	Start	End
ENSE00001613384	8644679	8644842
ENSE00001650635	8638294	8638406
ENSE00001733122	8644132	8644327

Expression profiles

Bgee: expression breadth broad, 78 present calls, max score 96.67.

Top tissues by expression

78 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
thoracic mammary gland	UBERON:0005200	96.67	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.08	gold quality
substantia nigra	UBERON:0002038	68.01	gold quality
putamen	UBERON:0001874	67.47	gold quality
uterine cervix	UBERON:0000002	65.06	silver quality
Ammon’s horn	UBERON:0001954	64.14	gold quality
islet of Langerhans	UBERON:0000006	63.74	gold quality
primary visual cortex	UBERON:0002436	61.45	gold quality
caudate nucleus	UBERON:0001873	60.82	gold quality
amygdala	UBERON:0001876	60.78	gold quality
hypothalamus	UBERON:0001898	60.73	gold quality
temporal lobe	UBERON:0001871	60.66	gold quality
urinary bladder	UBERON:0001255	59.82	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	59.25	gold quality
brain	UBERON:0000955	58.52	gold quality
Brodmann (1909) area 9	UBERON:0013540	58.52	gold quality
right frontal lobe	UBERON:0002810	58.27	gold quality
nucleus accumbens	UBERON:0001882	58.25	gold quality
cerebral cortex	UBERON:0000956	57.89	gold quality
frontal cortex	UBERON:0001870	57.79	gold quality
small intestine Peyer’s patch	UBERON:0003454	57.22	gold quality
monocyte	CL:0000576	56.19	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	56.17	gold quality
liver	UBERON:0002107	55.96	gold quality
prefrontal cortex	UBERON:0000451	55.81	gold quality
pituitary gland	UBERON:0000007	55.53	gold quality
superior frontal gyrus	UBERON:0002661	55.38	gold quality
anterior cingulate cortex	UBERON:0009835	55.12	gold quality
spleen	UBERON:0002106	54.71	gold quality
adenohypophysis	UBERON:0002196	54.35	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.32

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.