LINC00290

Summary

LINC00290 (long intergenic non-protein coding RNA 290, HGNC:38515) is a long non-coding RNA gene on chromosome 4q34.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:38515
Approved symbol	LINC00290
Name	long intergenic non-protein coding RNA 290
Location	4q34.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248197
Ensembl biotype	lncRNA
Entrez	728081
RNAcentral	URS000075A4B6 — lncRNA, 600 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000512487, ENST00000778348, ENST00000778349, ENST00000778350, ENST00000778351, ENST00000778352, ENST00000778353, ENST00000778354, ENST00000778355, ENST00000778356, ENST00000778357, ENST00000778358, ENST00000778359, ENST00000778360

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000512487 — 3 exons

Exon	Start	End
ENSE00002045839	181155613	181155739
ENSE00004147715	181159076	181159473
ENSE00004147724	181064024	181064480

Expression profiles

Bgee: expression breadth broad, 66 present calls, max score 73.01.

Top tissues by expression

176 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
adrenal tissue	UBERON:0018303	73.01	gold quality
caudate nucleus	UBERON:0001873	66.33	gold quality
nucleus accumbens	UBERON:0001882	66.17	gold quality
putamen	UBERON:0001874	65.71	gold quality
cortical plate	UBERON:0005343	64.76	gold quality
buccal mucosa cell	CL:0002336	61.62	gold quality
prefrontal cortex	UBERON:0000451	59.95	gold quality
anterior cingulate cortex	UBERON:0009835	58.14	gold quality
amygdala	UBERON:0001876	57.91	gold quality
hypothalamus	UBERON:0001898	56.80	gold quality
Brodmann (1909) area 9	UBERON:0013540	56.70	gold quality
forebrain	UBERON:0001890	55.79	gold quality
islet of Langerhans	UBERON:0000006	55.37	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	55.19	gold quality
brain	UBERON:0000955	54.73	gold quality
neocortex	UBERON:0001950	53.77	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	53.74	gold quality
lower lobe of lung	UBERON:0008949	53.71	silver quality
upper lobe of lung	UBERON:0008948	53.53	silver quality
Ammon’s horn	UBERON:0001954	53.24	gold quality
frontal cortex	UBERON:0001870	53.01	gold quality
cerebral cortex	UBERON:0000956	52.67	gold quality
right frontal lobe	UBERON:0002810	52.36	gold quality
temporal lobe	UBERON:0001871	52.24	gold quality
pancreas	UBERON:0001264	51.06	gold quality
substantia nigra	UBERON:0002038	49.47	gold quality
adrenal gland	UBERON:0002369	49.31	gold quality
tendon of biceps brachii	UBERON:0008188	48.92	gold quality
monocyte	CL:0000576	48.90	silver quality
muscle of leg	UBERON:0001383	48.36	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.