LINC00308

Summary

LINC00308 (long intergenic non-protein coding RNA 308, HGNC:16023) is a long non-coding RNA gene on chromosome 21q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:16023
Approved symbol	LINC00308
Name	long intergenic non-protein coding RNA 308
Location	21q21.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	PRED16
Ensembl gene	ENSG00000184856
Ensembl biotype	lncRNA
Entrez	54143
RNAcentral	URS00002DC28C — lncRNA, 727 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000419431, ENST00000657104

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419431 — 6 exons

Exon	Start	End
ENSE00001543427	22098617	22098712
ENSE00001612574	22116336	22116528
ENSE00001643098	22109446	22109553
ENSE00001684289	22114978	22115112
ENSE00001794212	22111771	22111826
ENSE00001798738	22114760	22114898

Expression profiles

Bgee: expression breadth broad, 65 present calls, max score 85.74.

Top tissues by expression

65 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.74	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.39	gold quality
lymph node	UBERON:0000029	56.15	gold quality
placenta	UBERON:0001987	55.17	gold quality
monocyte	CL:0000576	54.37	gold quality
blood	UBERON:0000178	53.25	gold quality
bone marrow	UBERON:0002371	51.90	gold quality
endometrium	UBERON:0001295	51.45	silver quality
cortex of kidney	UBERON:0001225	51.11	gold quality
right lobe of liver	UBERON:0001114	50.65	silver quality
vermiform appendix	UBERON:0001154	50.05	gold quality
adult mammalian kidney	UBERON:0000082	46.95	silver quality
liver	UBERON:0002107	46.62	silver quality
adrenal tissue	UBERON:0018303	46.43	silver quality
heart left ventricle	UBERON:0002084	45.71	silver quality
body of pancreas	UBERON:0001150	45.19	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	45.13	gold quality
fundus of stomach	UBERON:0001160	44.66	gold quality
gastrocnemius	UBERON:0001388	44.36	silver quality
multicellular organism	UBERON:0000468	43.82	gold quality
testis	UBERON:0000473	43.41	gold quality
left testis	UBERON:0004533	42.58	gold quality
minor salivary gland	UBERON:0001830	42.49	silver quality
thoracic aorta	UBERON:0001515	42.39	silver quality
tibial artery	UBERON:0007610	42.36	silver quality
nucleus accumbens	UBERON:0001882	42.32	gold quality
intestine	UBERON:0000160	42.28	silver quality
ascending aorta	UBERON:0001496	42.17	silver quality
colon	UBERON:0001155	41.98	gold quality
stomach	UBERON:0000945	41.87	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.