LINC00316

Summary

LINC00316 (long intergenic non-protein coding RNA 316, HGNC:19723) is a long non-coding RNA gene on chromosome 21q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:19723
Approved symbol	LINC00316
Name	long intergenic non-protein coding RNA 316
Location	21q22.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	PRED59
Ensembl gene	ENSG00000237664
Ensembl biotype	lncRNA
Entrez	388830
RNAcentral	URS000075C806 — lncRNA, 467 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000416722, ENST00000757314, ENST00000757315

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000416722 — 2 exons

Exon	Start	End
ENSE00004108291	45341825	45342024
ENSE00004108292	45338584	45338878

Expression profiles

Bgee: expression breadth ubiquitous, 102 present calls, max score 88.38.

Top tissues by expression

102 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.38	gold quality
left ovary	UBERON:0002119	62.14	gold quality
liver	UBERON:0002107	61.71	gold quality
ovary	UBERON:0000992	61.41	gold quality
right ovary	UBERON:0002118	59.62	gold quality
tibial artery	UBERON:0007610	59.00	gold quality
popliteal artery	UBERON:0002250	58.96	gold quality
pancreas	UBERON:0001264	58.78	gold quality
body of pancreas	UBERON:0001150	58.65	gold quality
prefrontal cortex	UBERON:0000451	58.38	gold quality
right lobe of liver	UBERON:0001114	57.55	gold quality
tonsil	UBERON:0002372	57.46	gold quality
ectocervix	UBERON:0012249	57.30	gold quality
right coronary artery	UBERON:0001625	56.94	gold quality
stromal cell of endometrium	CL:0002255	56.86	gold quality
superior frontal gyrus	UBERON:0002661	56.71	gold quality
islet of Langerhans	UBERON:0000006	56.58	gold quality
right uterine tube	UBERON:0001302	56.56	gold quality
fallopian tube	UBERON:0003889	55.47	gold quality
right lobe of thyroid gland	UBERON:0001119	54.40	gold quality
ascending aorta	UBERON:0001496	54.30	gold quality
thoracic aorta	UBERON:0001515	54.05	gold quality
myometrium	UBERON:0001296	53.67	gold quality
left uterine tube	UBERON:0001303	53.56	gold quality
placenta	UBERON:0001987	53.03	gold quality
thyroid gland	UBERON:0002046	53.01	gold quality
left lobe of thyroid gland	UBERON:0001120	52.87	gold quality
urinary bladder	UBERON:0001255	52.56	gold quality
blood	UBERON:0000178	52.38	gold quality
muscle layer of sigmoid colon	UBERON:0035805	52.33	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.