LINC00317

Summary

LINC00317 (long intergenic non-protein coding RNA 317, HGNC:23126) is a long non-coding RNA gene on chromosome 21q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:23126
Approved symbol	LINC00317
Name	long intergenic non-protein coding RNA 317
Location	21q21.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	PRED89
Ensembl gene	ENSG00000238265
Ensembl biotype	lncRNA
Entrez	378828
RNAcentral	URS000075D0F1 — lncRNA, 632 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000419069

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419069 — 3 exons

Exon	Start	End
ENSE00001715952	21737252	21737319
ENSE00001735958	21723293	21723774
ENSE00001759143	21727032	21727093

Expression profiles

Bgee: expression breadth broad, 15 present calls, max score 56.47.

Top tissues by expression

163 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
islet of Langerhans	UBERON:0000006	56.47	gold quality
Brodmann (1909) area 9	UBERON:0013540	50.96	gold quality
trabecular bone tissue	UBERON:0002483	50.35	gold quality
upper leg skin	UBERON:0004262	50.15	silver quality
monocyte	CL:0000576	49.82	silver quality
caecum	UBERON:0001153	46.37	gold quality
gastrocnemius	UBERON:0001388	46.13	silver quality
cardia of stomach	UBERON:0001162	44.68	gold quality
bone marrow	UBERON:0002371	44.65	gold quality
tibial artery	UBERON:0007610	44.00	silver quality
right frontal lobe	UBERON:0002810	43.48	gold quality
gingiva	UBERON:0001828	43.39	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
large intestine	UBERON:0000059	43.12	gold quality
fundus of stomach	UBERON:0001160	43.05	gold quality
aorta	UBERON:0000947	43.01	silver quality
pancreas	UBERON:0001264	42.98	gold quality
blood	UBERON:0000178	42.92	gold quality
thyroid gland	UBERON:0002046	42.70	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
upper lobe of lung	UBERON:0008948	42.55	silver quality
lower lobe of lung	UBERON:0008949	42.19	silver quality
vastus lateralis	UBERON:0001379	42.18	gold quality
quadriceps femoris	UBERON:0001377	42.12	gold quality
liver	UBERON:0002107	42.08	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
mouth mucosa	UBERON:0003729	41.90	gold quality
substantia nigra pars compacta	UBERON:0001965	41.88	gold quality
cardiac ventricle	UBERON:0002082	41.86	gold quality
biceps brachii	UBERON:0001507	41.85	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.