LINC00322

Summary

LINC00322 (long intergenic non-protein coding RNA 322, HGNC:33698) is a long non-coding RNA gene on chromosome 21q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:33698
Approved symbol	LINC00322
Name	long intergenic non-protein coding RNA 322
Location	21q22.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ16545
Ensembl gene	ENSG00000237864
Ensembl biotype	lncRNA
Entrez	100126693
RNAcentral	URS000075AAB0 — lncRNA, 907 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000450205, ENST00000851009

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000450205 — 3 exons

Exon	Start	End
ENSE00001622446	43331856	43332039
ENSE00001659685	43326159	43326240
ENSE00001746843	43322417	43322849

Expression profiles

Bgee: expression breadth broad, 82 present calls, max score 63.40.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1666 / max 36.5102, expressed in 72 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
190694	0.1281	58
190695	0.0277	10
190693	0.0108	4

Top tissues by expression

82 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	63.40	silver quality
right hemisphere of cerebellum	UBERON:0014890	60.61	gold quality
bone marrow	UBERON:0002371	59.37	gold quality
placenta	UBERON:0001987	54.10	gold quality
gall bladder	UBERON:0002110	53.93	gold quality
lymph node	UBERON:0000029	53.91	gold quality
adrenal tissue	UBERON:0018303	53.19	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.38	gold quality
tibial artery	UBERON:0007610	50.84	gold quality
islet of Langerhans	UBERON:0000006	50.74	gold quality
cerebellar hemisphere	UBERON:0002245	50.58	gold quality
vermiform appendix	UBERON:0001154	50.46	gold quality
blood	UBERON:0000178	49.99	silver quality
Brodmann (1909) area 9	UBERON:0013540	49.80	gold quality
corpus callosum	UBERON:0002336	49.52	gold quality
myometrium	UBERON:0001296	49.51	gold quality
kidney	UBERON:0002113	49.23	gold quality
adrenal gland	UBERON:0002369	48.42	gold quality
superior frontal gyrus	UBERON:0002661	48.33	silver quality
cortex of kidney	UBERON:0001225	48.31	silver quality
right frontal lobe	UBERON:0002810	48.30	gold quality
smooth muscle tissue	UBERON:0001135	47.76	gold quality
anterior cingulate cortex	UBERON:0009835	47.07	gold quality
tonsil	UBERON:0002372	46.77	gold quality
nucleus accumbens	UBERON:0001882	46.72	gold quality
fundus of stomach	UBERON:0001160	46.66	gold quality
adult mammalian kidney	UBERON:0000082	46.13	silver quality
ovary	UBERON:0000992	46.03	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	45.96	gold quality
gastrocnemius	UBERON:0001388	45.66	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.49

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.