LINC00330

Summary

LINC00330 (long intergenic non-protein coding RNA 330, HGNC:42047) is a long non-coding RNA gene on chromosome 13q14.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42047
Approved symbol	LINC00330
Name	long intergenic non-protein coding RNA 330
Location	13q14.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235097
Ensembl biotype	lncRNA
Entrez	144817
RNAcentral	URS0000CCE0A2 — lncRNA, 2035 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000414562

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414562 — 3 exons

Exon	Start	End
ENSE00001645769	44799503	44801005
ENSE00001680111	44809409	44809630
ENSE00001732451	44804720	44805030

Expression profiles

Bgee: expression breadth broad, 73 present calls, max score 83.12.

Top tissues by expression

175 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	83.12	gold quality
esophagus mucosa	UBERON:0002469	68.69	gold quality
lower esophagus mucosa	UBERON:0035834	68.03	gold quality
esophagus squamous epithelium	UBERON:0006920	65.85	gold quality
esophagus	UBERON:0001043	65.76	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.75	gold quality
ectocervix	UBERON:0012249	61.11	gold quality
minor salivary gland	UBERON:0001830	59.46	gold quality
duodenum	UBERON:0002114	58.75	gold quality
mammary duct	UBERON:0001765	58.67	gold quality
mouth mucosa	UBERON:0003729	57.88	gold quality
vagina	UBERON:0000996	57.73	gold quality
saliva-secreting gland	UBERON:0001044	57.69	gold quality
oral cavity	UBERON:0000167	56.73	gold quality
mucosa of paranasal sinus	UBERON:0005030	55.97	gold quality
tonsil	UBERON:0002372	55.09	gold quality
muscle of leg	UBERON:0001383	55.03	gold quality
gastrocnemius	UBERON:0001388	54.73	gold quality
gingival epithelium	UBERON:0001949	54.26	gold quality
gingiva	UBERON:0001828	54.02	gold quality
sperm	CL:0000019	53.84	gold quality
primary visual cortex	UBERON:0002436	53.46	gold quality
small intestine	UBERON:0002108	53.38	gold quality
Brodmann (1909) area 23	UBERON:0013554	53.25	gold quality
nucleus accumbens	UBERON:0001882	53.22	gold quality
small intestine Peyer’s patch	UBERON:0003454	53.07	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.03	gold quality
middle temporal gyrus	UBERON:0002771	52.32	gold quality
tendon of biceps brachii	UBERON:0008188	51.49	silver quality
uterine cervix	UBERON:0000002	50.98	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.