LINC00343

Summary

LINC00343 (long intergenic non-protein coding RNA 343, HGNC:42500) is a long non-coding RNA gene on chromosome 13q33.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42500
Approved symbol	LINC00343
Name	long intergenic non-protein coding RNA 343
Location	13q33.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226620
Ensembl biotype	lncRNA
Entrez	144920
RNAcentral	URS000075B616 — lncRNA, 1276 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 145 — 144 lncRNA, 1 retained_intron

ENST00000414368, ENST00000415294, ENST00000454555, ENST00000596398, ENST00000598229, ENST00000598478, ENST00000599179, ENST00000599264, ENST00000601607, ENST00000608220, ENST00000608426, ENST00000608624, ENST00000653082, ENST00000653178, ENST00000653504, ENST00000653600, ENST00000654086, ENST00000654132, ENST00000654352, ENST00000654904, ENST00000654919, ENST00000655062, ENST00000655173, ENST00000655201, ENST00000655206, ENST00000655448, ENST00000655625, ENST00000655741, ENST00000656267, ENST00000656290, ENST00000656479, ENST00000656539, ENST00000656615, ENST00000656646, ENST00000656920, ENST00000657324, ENST00000657599, ENST00000657690, ENST00000658024, ENST00000658095, ENST00000658151, ENST00000658169, ENST00000658308, ENST00000658692, ENST00000658711, ENST00000659016, ENST00000659165, ENST00000659258, ENST00000659496, ENST00000659909, ENST00000660236, ENST00000660294, ENST00000660560, ENST00000660821, ENST00000660976, ENST00000661079, ENST00000661301, ENST00000661782, ENST00000661817, ENST00000661872, ENST00000661976, ENST00000662500, ENST00000662776, ENST00000663045, ENST00000663194, ENST00000663287, ENST00000663594, ENST00000663744, ENST00000663761, ENST00000663969, ENST00000664090, ENST00000664140, ENST00000664201, ENST00000664522, ENST00000664695, ENST00000664796, ENST00000665309, ENST00000665747, ENST00000666040, ENST00000666322, ENST00000666696, ENST00000666723, ENST00000666948, ENST00000667106, ENST00000667217, ENST00000667429, ENST00000667492, ENST00000667534, ENST00000667582, ENST00000667685, ENST00000667987, ENST00000668080, ENST00000668272, ENST00000668279, ENST00000668362, ENST00000668396, ENST00000668581, ENST00000668939, ENST00000668966, ENST00000669035, ENST00000669144, ENST00000669264, ENST00000669497, ENST00000669507, ENST00000669540, ENST00000669655, ENST00000669675, ENST00000669706, ENST00000669807, ENST00000669840, ENST00000669886, ENST00000669887, ENST00000669959, ENST00000670114, ENST00000670303, ENST00000670308, ENST00000670429, ENST00000670430, ENST00000670433, ENST00000670530, ENST00000670546, ENST00000670555, ENST00000670771, ENST00000670821, ENST00000670977, ENST00000671026, ENST00000671053, ENST00000671060, ENST00000671402, ENST00000671516, ENST00000671561, ENST00000831894, ENST00000831895, ENST00000831896, ENST00000831897, ENST00000831898, ENST00000831899, ENST00000831900, ENST00000831901, ENST00000831902, ENST00000831903, ENST00000831904, ENST00000831905, ENST00000831906, ENST00000831907

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414368 — 3 exons

Exon	Start	End
ENSE00001655568	105730315	105730458
ENSE00003704172	105729501	105729959
ENSE00003710041	105731448	105731708

Expression profiles

Bgee: expression breadth broad, 85 present calls, max score 87.59.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0322 / max 25.6620, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
135952	0.0322	3

Top tissues by expression

189 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	87.59	gold quality
right testis	UBERON:0004534	86.10	gold quality
testis	UBERON:0000473	84.08	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.81	gold quality
sural nerve	UBERON:0015488	79.01	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.58	gold quality
colonic epithelium	UBERON:0000397	72.32	gold quality
bone marrow cell	CL:0002092	70.90	silver quality
cortical plate	UBERON:0005343	68.60	gold quality
prefrontal cortex	UBERON:0000451	66.85	gold quality
ventricular zone	UBERON:0003053	64.56	gold quality
Brodmann (1909) area 9	UBERON:0013540	62.30	gold quality
ganglionic eminence	UBERON:0004023	61.62	gold quality
frontal cortex	UBERON:0001870	58.67	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	58.41	gold quality
neocortex	UBERON:0001950	57.78	gold quality
tonsil	UBERON:0002372	57.19	silver quality
anterior cingulate cortex	UBERON:0009835	56.87	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.86	gold quality
uterine cervix	UBERON:0000002	56.78	silver quality
right frontal lobe	UBERON:0002810	56.75	gold quality
cerebral cortex	UBERON:0000956	54.88	gold quality
monocyte	CL:0000576	54.43	gold quality
adrenal gland	UBERON:0002369	53.98	gold quality
right lobe of liver	UBERON:0001114	52.50	gold quality
forebrain	UBERON:0001890	52.09	gold quality
cerebellar hemisphere	UBERON:0002245	52.04	gold quality
right hemisphere of cerebellum	UBERON:0014890	51.87	gold quality
metanephros cortex	UBERON:0010533	51.76	gold quality
muscle of leg	UBERON:0001383	51.55	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.22

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.