LINC00347

Summary

LINC00347 (long intergenic non-protein coding RNA 347, HGNC:27890) is a long non-coding RNA gene on chromosome 13q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27890
Approved symbol	LINC00347
Name	long intergenic non-protein coding RNA 347
Location	13q22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236678
Ensembl biotype	lncRNA
Entrez	338864
RNAcentral	URS000075A60E — lncRNA, 2105 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000451336, ENST00000594461, ENST00000595711, ENST00000596240, ENST00000597518, ENST00000600832, ENST00000601480, ENST00000664176

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000451336 — 3 exons

Exon	Start	End
ENSE00001599137	74555225	74555738
ENSE00001630405	74552843	74552903
ENSE00001679620	74554657	74554760

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 86.23.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0287 / max 32.4781, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
135391	0.0287	3

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	86.23	gold quality
testis	UBERON:0000473	85.91	gold quality
right testis	UBERON:0004534	85.53	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.12	gold quality
stromal cell of endometrium	CL:0002255	58.65	gold quality
endometrium	UBERON:0001295	56.65	gold quality
calcaneal tendon	UBERON:0003701	55.30	gold quality
monocyte	CL:0000576	55.19	gold quality
bone marrow	UBERON:0002371	55.14	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.49	gold quality
liver	UBERON:0002107	54.38	gold quality
blood	UBERON:0000178	53.04	gold quality
apex of heart	UBERON:0002098	52.22	gold quality
lymph node	UBERON:0000029	52.01	gold quality
superior frontal gyrus	UBERON:0002661	50.82	gold quality
corpus callosum	UBERON:0002336	50.49	silver quality
islet of Langerhans	UBERON:0000006	50.02	gold quality
adrenal tissue	UBERON:0018303	49.89	gold quality
prefrontal cortex	UBERON:0000451	49.50	gold quality
gall bladder	UBERON:0002110	49.45	gold quality
placenta	UBERON:0001987	49.34	gold quality
right lobe of liver	UBERON:0001114	49.31	gold quality
vermiform appendix	UBERON:0001154	48.62	gold quality
primary visual cortex	UBERON:0002436	48.61	gold quality
myometrium	UBERON:0001296	48.44	gold quality
kidney	UBERON:0002113	48.30	silver quality
multicellular organism	UBERON:0000468	47.87	gold quality
muscle of leg	UBERON:0001383	47.51	gold quality
cortex of kidney	UBERON:0001225	47.49	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	47.29	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.60

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.