LINC00348

Summary

LINC00348 (long intergenic non-protein coding RNA 348, HGNC:42658) is a long non-coding RNA gene on chromosome 13q21.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42658
Approved symbol	LINC00348
Name	long intergenic non-protein coding RNA 348
Location	13q21.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226846
Ensembl biotype	lncRNA
Entrez	100885781
RNAcentral	URS000075B52D — lncRNA, 958 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 22 — 22 lncRNA

ENST00000428761, ENST00000653160, ENST00000653878, ENST00000655045, ENST00000655546, ENST00000656251, ENST00000658800, ENST00000659244, ENST00000660222, ENST00000661523, ENST00000662353, ENST00000663997, ENST00000664823, ENST00000665820, ENST00000666881, ENST00000667632, ENST00000668650, ENST00000671240, ENST00000671477, ENST00000779639, ENST00000779640, ENST00000779641

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000428761 — 4 exons

Exon	Start	End
ENSE00001654793	71143186	71143236
ENSE00001710921	71167370	71167426
ENSE00001771000	71167686	71168417
ENSE00003883571	71015045	71015248

Expression profiles

Bgee: expression breadth broad, 76 present calls, max score 85.90.

Top tissues by expression

185 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.90	gold quality
sperm	CL:0000019	76.55	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	66.36	gold quality
anterior cingulate cortex	UBERON:0009835	62.98	gold quality
islet of Langerhans	UBERON:0000006	60.90	gold quality
left testis	UBERON:0004533	60.75	gold quality
testis	UBERON:0000473	59.78	gold quality
right testis	UBERON:0004534	58.89	gold quality
pancreas	UBERON:0001264	56.75	gold quality
cardiac muscle of right atrium	UBERON:0003379	55.35	gold quality
tibialis anterior	UBERON:0001385	54.23	silver quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
monocyte	CL:0000576	53.63	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
epithelial cell of pancreas	CL:0000083	53.11	gold quality
gall bladder	UBERON:0002110	52.55	gold quality
cardiac atrium	UBERON:0002081	52.46	gold quality
calcaneal tendon	UBERON:0003701	52.13	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	51.29	gold quality
gastrocnemius	UBERON:0001388	50.84	silver quality
caudate nucleus	UBERON:0001873	50.78	gold quality
myocardium	UBERON:0002349	50.68	gold quality
prefrontal cortex	UBERON:0000451	49.75	gold quality
primary visual cortex	UBERON:0002436	49.61	gold quality
right lobe of liver	UBERON:0001114	49.49	gold quality
ileal mucosa	UBERON:0000331	49.13	silver quality
skin of hip	UBERON:0001554	48.79	silver quality
putamen	UBERON:0001874	48.25	gold quality
liver	UBERON:0002107	47.47	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.