LINC00349

Summary

LINC00349 (long intergenic non-protein coding RNA 349, HGNC:42667) is a long non-coding RNA gene on chromosome 13q11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42667
Approved symbol	LINC00349
Name	long intergenic non-protein coding RNA 349
Location	13q11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231238
Ensembl biotype	lncRNA
Entrez	100874135
RNAcentral	URS0000EEC4B2 — lncRNA, 1169 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000448748, ENST00000652806

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000448748 — 2 exons

Exon	Start	End
ENSE00001656715	18540497	18540929
ENSE00001715084	18550290	18550697

Expression profiles

Bgee: expression breadth broad, 79 present calls, max score 79.27.

Top tissues by expression

79 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.27	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.91	gold quality
ganglionic eminence	UBERON:0004023	65.02	gold quality
calcaneal tendon	UBERON:0003701	63.54	gold quality
sural nerve	UBERON:0015488	63.48	gold quality
ventricular zone	UBERON:0003053	60.18	gold quality
endometrium	UBERON:0001295	55.91	silver quality
monocyte	CL:0000576	55.25	gold quality
nucleus accumbens	UBERON:0001882	53.03	gold quality
primary visual cortex	UBERON:0002436	52.97	gold quality
liver	UBERON:0002107	52.93	gold quality
testis	UBERON:0000473	52.92	gold quality
prefrontal cortex	UBERON:0000451	51.87	gold quality
blood	UBERON:0000178	51.45	silver quality
placenta	UBERON:0001987	51.08	silver quality
hindlimb stylopod muscle	UBERON:0004252	50.34	silver quality
superior frontal gyrus	UBERON:0002661	49.86	gold quality
fundus of stomach	UBERON:0001160	49.38	gold quality
gastrocnemius	UBERON:0001388	49.09	silver quality
Brodmann (1909) area 9	UBERON:0013540	48.90	gold quality
small intestine	UBERON:0002108	48.56	gold quality
putamen	UBERON:0001874	48.44	gold quality
body of pancreas	UBERON:0001150	48.32	gold quality
stomach	UBERON:0000945	47.95	gold quality
caudate nucleus	UBERON:0001873	47.51	gold quality
thoracic mammary gland	UBERON:0005200	47.09	silver quality
brain	UBERON:0000955	46.95	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	46.58	gold quality
frontal cortex	UBERON:0001870	46.57	gold quality
anterior cingulate cortex	UBERON:0009835	46.53	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.