LINC00353

Summary

LINC00353 (long intergenic non-protein coding RNA 353, HGNC:42671) is a long non-coding RNA gene on chromosome 13q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42671
Approved symbol	LINC00353
Name	long intergenic non-protein coding RNA 353
Location	13q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236176
Ensembl biotype	lncRNA
Entrez	100874139
RNAcentral	URS000075AB75 — lncRNA, 655 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000435401

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000435401 — 3 exons

Exon	Start	End
ENSE00001673048	89548691	89549211
ENSE00001704529	89553731	89553804
ENSE00001737986	89551201	89551290

Expression profiles

Bgee: expression breadth broad, 21 present calls, max score 81.02.

Top tissues by expression

21 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.02	silver quality
ventricular zone	UBERON:0003053	64.62	gold quality
calcaneal tendon	UBERON:0003701	55.86	gold quality
kidney	UBERON:0002113	55.65	gold quality
monocyte	CL:0000576	54.92	gold quality
liver	UBERON:0002107	54.06	gold quality
adult mammalian kidney	UBERON:0000082	53.54	gold quality
skin of leg	UBERON:0001511	49.28	gold quality
blood	UBERON:0000178	49.23	silver quality
left testis	UBERON:0004533	48.59	gold quality
testis	UBERON:0000473	48.33	gold quality
right testis	UBERON:0004534	47.19	gold quality
right lobe of liver	UBERON:0001114	46.48	silver quality
gastrocnemius	UBERON:0001388	45.75	silver quality
esophagus mucosa	UBERON:0002469	41.30	silver quality
right frontal lobe	UBERON:0002810	41.21	gold quality
caudate nucleus	UBERON:0001873	40.08	silver quality
left adrenal gland	UBERON:0001234	39.84	silver quality
substantia nigra	UBERON:0002038	38.71	silver quality
right atrium auricular region	UBERON:0006631	38.69	silver quality
tibial nerve	UBERON:0001323	37.72	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.