LINC00368

Summary

LINC00368 (long intergenic non-protein coding RNA 368, HGNC:42690) is a long non-coding RNA gene on chromosome 13q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42690
Approved symbol	LINC00368
Name	long intergenic non-protein coding RNA 368
Location	13q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225870
Ensembl biotype	lncRNA
Entrez	101927802
RNAcentral	URS000075DE79 — lncRNA, 3455 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000422994, ENST00000758078, ENST00000758079, ENST00000758080

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000422994 — 3 exons

Exon	Start	End
ENSE00001633475	111096670	111096862
ENSE00001751310	111095838	111095894
ENSE00001784742	111102698	111103097

Expression profiles

Bgee: expression breadth ubiquitous, 101 present calls, max score 85.27.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0117 / max 10.8260, expressed in 5 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
136087	0.0117	5

Top tissues by expression

101 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.27	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.24	gold quality
cortical plate	UBERON:0005343	66.00	gold quality
ventricular zone	UBERON:0003053	64.84	gold quality
ganglionic eminence	UBERON:0004023	62.74	gold quality
sural nerve	UBERON:0015488	60.37	silver quality
hindlimb stylopod muscle	UBERON:0004252	60.26	gold quality
islet of Langerhans	UBERON:0000006	55.02	gold quality
right testis	UBERON:0004534	54.90	gold quality
testis	UBERON:0000473	54.69	gold quality
left testis	UBERON:0004533	54.56	gold quality
monocyte	CL:0000576	52.18	gold quality
blood	UBERON:0000178	51.84	gold quality
liver	UBERON:0002107	50.94	silver quality
prefrontal cortex	UBERON:0000451	50.91	gold quality
tibial artery	UBERON:0007610	49.92	gold quality
popliteal artery	UBERON:0002250	49.78	gold quality
endometrium	UBERON:0001295	49.74	silver quality
lymph node	UBERON:0000029	49.51	gold quality
metanephros cortex	UBERON:0010533	48.85	gold quality
calcaneal tendon	UBERON:0003701	48.84	silver quality
cortex of kidney	UBERON:0001225	48.69	gold quality
muscle of leg	UBERON:0001383	48.66	gold quality
gastrocnemius	UBERON:0001388	47.83	gold quality
right lobe of liver	UBERON:0001114	47.51	silver quality
smooth muscle tissue	UBERON:0001135	47.38	gold quality
subcutaneous adipose tissue	UBERON:0002190	46.94	gold quality
cerebellum	UBERON:0002037	46.78	silver quality
cerebellar cortex	UBERON:0002129	46.73	silver quality
cerebellar hemisphere	UBERON:0002245	46.68	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.