LINC00379

Summary

LINC00379 (long intergenic non-protein coding RNA 379, HGNC:42705) is a long non-coding RNA gene on chromosome 13q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42705
Approved symbol	LINC00379
Name	long intergenic non-protein coding RNA 379
Location	13q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229557
Ensembl biotype	lncRNA
Entrez	100874150
RNAcentral	URS000075D7A9 — lncRNA, 570 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000427717, ENST00000438789, ENST00000792034, ENST00000792035

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427717 — 4 exons

Exon	Start	End
ENSE00001691732	91131223	91131407
ENSE00004173666	91211630	91211712
ENSE00004173668	91127609	91127858
ENSE00004173670	91194014	91194080

Expression profiles

Bgee: expression breadth broad, 100 present calls, max score 81.40.

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.40	silver quality
metanephros cortex	UBERON:0010533	79.68	gold quality
adult mammalian kidney	UBERON:0000082	76.39	gold quality
kidney	UBERON:0002113	74.76	gold quality
cortex of kidney	UBERON:0001225	71.51	gold quality
skeletal muscle tissue	UBERON:0001134	67.03	silver quality
bone marrow	UBERON:0002371	66.20	gold quality
quadriceps femoris	UBERON:0001377	65.49	gold quality
cerebellar vermis	UBERON:0004720	64.61	gold quality
adrenal tissue	UBERON:0018303	64.33	gold quality
monocyte	CL:0000576	62.33	gold quality
corpus callosum	UBERON:0002336	61.40	gold quality
thymus	UBERON:0002370	59.90	silver quality
islet of Langerhans	UBERON:0000006	59.53	gold quality
calcaneal tendon	UBERON:0003701	59.29	gold quality
gall bladder	UBERON:0002110	58.96	gold quality
blood	UBERON:0000178	58.77	gold quality
vermiform appendix	UBERON:0001154	57.30	gold quality
prefrontal cortex	UBERON:0000451	57.29	gold quality
liver	UBERON:0002107	55.08	gold quality
placenta	UBERON:0001987	54.04	gold quality
pancreas	UBERON:0001264	53.80	gold quality
fallopian tube	UBERON:0003889	53.49	gold quality
lymph node	UBERON:0000029	52.66	silver quality
mucosa of transverse colon	UBERON:0004991	52.47	gold quality
endometrium	UBERON:0001295	52.21	gold quality
gastrocnemius	UBERON:0001388	52.15	gold quality
body of pancreas	UBERON:0001150	51.02	gold quality
right uterine tube	UBERON:0001302	50.83	gold quality
adrenal gland	UBERON:0002369	50.74	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.