LINC00380

Summary

LINC00380 (long intergenic non-protein coding RNA 380, HGNC:42706) is a long non-coding RNA gene on chromosome 13q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42706
Approved symbol	LINC00380
Name	long intergenic non-protein coding RNA 380
Location	13q31.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00021685
Ensembl gene	ENSG00000234625
Ensembl biotype	lncRNA
Entrez	101930747
RNAcentral	URS000075A7FB — lncRNA, 410 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000442478

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000442478 — 2 exons

Exon	Start	End
ENSE00001802374	91087254	91087534
ENSE00004154223	91089522	91089664

Expression profiles

Bgee: expression breadth broad, 21 present calls, max score 71.06.

Top tissues by expression

21 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
metanephros cortex	UBERON:0010533	71.06	gold quality
kidney	UBERON:0002113	63.32	gold quality
blood	UBERON:0000178	62.54	gold quality
adult mammalian kidney	UBERON:0000082	61.62	gold quality
placenta	UBERON:0001987	57.01	gold quality
monocyte	CL:0000576	56.51	gold quality
gastrocnemius	UBERON:0001388	55.93	gold quality
tibial artery	UBERON:0007610	54.44	gold quality
left coronary artery	UBERON:0001626	49.17	gold quality
ascending aorta	UBERON:0001496	49.07	gold quality
prostate gland	UBERON:0002367	48.37	gold quality
left adrenal gland cortex	UBERON:0035825	46.84	silver quality
heart	UBERON:0000948	46.47	gold quality
Brodmann (1909) area 9	UBERON:0013540	42.74	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	41.42	silver quality
Ammon’s horn	UBERON:0001954	38.05	silver quality
pituitary gland	UBERON:0000007	37.48	silver quality
anterior cingulate cortex	UBERON:0009835	35.11	silver quality
testis	UBERON:0000473	27.93	silver quality
right testis	UBERON:0004534	27.66	silver quality
left testis	UBERON:0004533	27.05	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.