LINC00382

Summary

LINC00382 (long intergenic non-protein coding RNA 382, HGNC:42709) is a long non-coding RNA gene on chromosome 13q31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42709
Approved symbol	LINC00382
Name	long intergenic non-protein coding RNA 382
Location	13q31.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00021500
Ensembl gene	ENSG00000229175
Ensembl biotype	lncRNA
Entrez	101927195
RNAcentral	URS000075AD21 — lncRNA, 996 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000427918, ENST00000657824, ENST00000658610, ENST00000660928, ENST00000661565, ENST00000663622, ENST00000667336, ENST00000667673, ENST00000777509, ENST00000777510, ENST00000777511, ENST00000777512, ENST00000777513, ENST00000777514, ENST00000777515

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427918 — 6 exons

Exon	Start	End
ENSE00001616396	79908812	79908875
ENSE00001633579	79912395	79912502
ENSE00001664202	79872586	79872696
ENSE00001726569	79914716	79914860
ENSE00001762967	79916534	79916622
ENSE00001806256	79917572	79918042

Expression profiles

Bgee: expression breadth broad, 19 present calls, max score 85.91.

Top tissues by expression

167 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.91	gold quality
sperm	CL:0000019	73.46	silver quality
endothelial cell	CL:0000115	54.03	gold quality
upper lobe of lung	UBERON:0008948	52.69	silver quality
lower lobe of lung	UBERON:0008949	52.56	silver quality
monocyte	CL:0000576	49.23	silver quality
left testis	UBERON:0004533	48.13	gold quality
testis	UBERON:0000473	46.98	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	46.28	silver quality
tibial artery	UBERON:0007610	45.72	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	45.61	silver quality
Brodmann (1909) area 9	UBERON:0013540	44.76	silver quality
right testis	UBERON:0004534	44.34	gold quality
skin of leg	UBERON:0001511	44.02	silver quality
lung	UBERON:0002048	43.97	gold quality
gastrocnemius	UBERON:0001388	43.94	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
blood	UBERON:0000178	42.26	gold quality
prefrontal cortex	UBERON:0000451	42.12	gold quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
adult mammalian kidney	UBERON:0000082	41.34	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
lower esophagus muscularis layer	UBERON:0035833	41.28	gold quality
material anatomical entity	UBERON:0000465	41.19	silver quality
anatomical system	UBERON:0000467	41.16	silver quality
bone marrow	UBERON:0002371	41.14	gold quality
multicellular organism	UBERON:0000468	41.10	silver quality
skeletal muscle tissue	UBERON:0001134	41.10	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.29

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.