LINC00383

Summary

LINC00383 (long intergenic non-protein coding RNA 383, HGNC:42710) is a long non-coding RNA gene on chromosome 13q21.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42710
Approved symbol	LINC00383
Name	long intergenic non-protein coding RNA 383
Location	13q21.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235221
Ensembl biotype	lncRNA
Entrez	103689913
RNAcentral	URS00007E37E5 — lncRNA, 1047 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000431686, ENST00000433664, ENST00000648574, ENST00000657223

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000431686 — 2 exons

Exon	Start	End
ENSE00001732214	69321345	69322101
ENSE00001768254	69311333	69311396

Expression profiles

Bgee: expression breadth broad, 84 present calls, max score 77.70.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1687 / max 23.6665, expressed in 52 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
135305	0.1606	52
135306	0.0081	5

Top tissues by expression

84 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.70	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.28	gold quality
testis	UBERON:0000473	59.84	silver quality
hindlimb stylopod muscle	UBERON:0004252	58.68	silver quality
liver	UBERON:0002107	57.30	silver quality
sural nerve	UBERON:0015488	55.30	silver quality
blood	UBERON:0000178	53.70	gold quality
prefrontal cortex	UBERON:0000451	49.28	silver quality
monocyte	CL:0000576	48.78	silver quality
muscle of leg	UBERON:0001383	48.55	silver quality
spleen	UBERON:0002106	48.00	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.99	gold quality
islet of Langerhans	UBERON:0000006	47.46	silver quality
adult mammalian kidney	UBERON:0000082	47.37	silver quality
right lobe of liver	UBERON:0001114	47.19	silver quality
gastrocnemius	UBERON:0001388	45.83	gold quality
multicellular organism	UBERON:0000468	45.65	gold quality
ectocervix	UBERON:0012249	45.05	gold quality
superior frontal gyrus	UBERON:0002661	44.91	silver quality
pancreas	UBERON:0001264	44.90	silver quality
frontal cortex	UBERON:0001870	44.50	silver quality
tibial artery	UBERON:0007610	44.36	silver quality
adrenal gland	UBERON:0002369	43.91	silver quality
body of pancreas	UBERON:0001150	43.42	silver quality
left uterine tube	UBERON:0001303	43.14	gold quality
heart left ventricle	UBERON:0002084	42.94	silver quality
left adrenal gland	UBERON:0001234	42.89	silver quality
ovary	UBERON:0000992	42.71	silver quality
heart	UBERON:0000948	42.67	silver quality
cerebral cortex	UBERON:0000956	42.64	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.