LINC00385

Summary

LINC00385 (long intergenic non-protein coding RNA 385, HGNC:42713) is a long non-coding RNA gene on chromosome 13q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:42713
Approved symbol	LINC00385
Name	long intergenic non-protein coding RNA 385
Location	13q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232643
Ensembl biotype	lncRNA
Entrez	105370141
RNAcentral	URS00026A2620 — lncRNA, 1720 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000435044, ENST00000805431, ENST00000805432

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000435044 — 3 exons

Exon	Start	End
ENSE00001702515	30154289	30154897
ENSE00001791877	30153744	30154141
ENSE00003876125	30160468	30160592

Expression profiles

Bgee: expression breadth broad, 36 present calls, max score 65.74.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0134 / max 11.7282, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
134608	0.0134	4

Top tissues by expression

36 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	65.74	gold quality
testis	UBERON:0000473	65.00	gold quality
right testis	UBERON:0004534	63.32	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.82	silver quality
lymph node	UBERON:0000029	53.85	gold quality
prefrontal cortex	UBERON:0000451	52.19	gold quality
saliva-secreting gland	UBERON:0001044	51.25	silver quality
Ammon’s horn	UBERON:0001954	47.87	gold quality
blood	UBERON:0000178	46.09	silver quality
gall bladder	UBERON:0002110	45.75	silver quality
skin of leg	UBERON:0001511	45.53	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	45.44	silver quality
gastrocnemius	UBERON:0001388	45.10	gold quality
small intestine	UBERON:0002108	44.66	silver quality
lower esophagus muscularis layer	UBERON:0035833	43.27	silver quality
subcutaneous adipose tissue	UBERON:0002190	43.21	silver quality
tibial artery	UBERON:0007610	42.80	silver quality
right frontal lobe	UBERON:0002810	41.83	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	41.61	silver quality
nucleus accumbens	UBERON:0001882	41.49	silver quality
adult mammalian kidney	UBERON:0000082	40.50	silver quality
putamen	UBERON:0001874	40.17	silver quality
heart left ventricle	UBERON:0002084	39.67	silver quality
thoracic aorta	UBERON:0001515	39.43	silver quality
anterior cingulate cortex	UBERON:0009835	39.36	silver quality
Brodmann (1909) area 9	UBERON:0013540	39.16	silver quality
right atrium auricular region	UBERON:0006631	38.92	silver quality
tibial nerve	UBERON:0001323	38.72	gold quality
transverse colon	UBERON:0001157	38.36	silver quality
prostate gland	UBERON:0002367	37.03	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.